mRNA_Ecto-sp13_S_contig13787.2972.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13787.2972.1
Unique NamemRNA_Ecto-sp13_S_contig13787.2972.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13787.2972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13787contigEcto-sp13_S_contig13787:2962..3336 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size159
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size141
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462736.0249627-CDS-Ecto-sp13_S_contig13787:2961..30401681462736.0249627-CDS-Ecto-sp13_S_contig13787:2961..3040Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13787 2962..3040 +
1681462736.0340922-CDS-Ecto-sp13_S_contig13787:3258..33201681462736.0340922-CDS-Ecto-sp13_S_contig13787:3258..3320Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13787 3259..3320 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462736.0428936-UTR-Ecto-sp13_S_contig13787:3320..33361681462736.0428936-UTR-Ecto-sp13_S_contig13787:3320..3336Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13787 3321..3336 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13787.2972.1prot_Ecto-sp13_S_contig13787.2972.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13787 2962..3320 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13787.2972.1

>prot_Ecto-sp13_S_contig13787.2972.1 ID=prot_Ecto-sp13_S_contig13787.2972.1|Name=mRNA_Ecto-sp13_S_contig13787.2972.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=47bp
PSATRWSLESHRGLAPPSPWGLVVSIVVRRHSSPRLGRLLQYFGRP*
back to top

mRNA from alignment at Ecto-sp13_S_contig13787:2962..3336+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13787.2972.1 ID=mRNA_Ecto-sp13_S_contig13787.2972.1|Name=mRNA_Ecto-sp13_S_contig13787.2972.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13787:2962..3336+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCAAGCGCGACTAGGTGGAGTCTGGAATCGCATCGCGGGTTGGCACCCCC
CAGTCCGTGGGGCCTAGTTGTTAGCATAGGTGCGTCTATTCAACGAGCAC
GAAAGGCGGGTAAAAATCCAATGCCACTCGCACACCTTGGTTCCCCCCGC
CGCCCATGCCTCCAGGACGGTTTCCTCGAACGCGGTGGACTTCGCCACAC
CCGTGATCGCTCCACCCGTGTAGCCGGCTTCCCCGCACTGGCATCACCCA
ACCGCCGCGGTCCCCGGCTCCCGCCCCCCTCCCTCCTCGTCCGTCAGTTG
TCCGCCGCCACTCATCCCCACGACTTGGACGACTTCTTCAATATTTCGGG
CGGCCGTGATGAGGCCTCCGGCATG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13787:2962..3336+

>mRNA_Ecto-sp13_S_contig13787.2972.1 ID=mRNA_Ecto-sp13_S_contig13787.2972.1|Name=mRNA_Ecto-sp13_S_contig13787.2972.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13787:2962..3336+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCAAGCGCGACTAGGTGGAGTCTGGAATCGCATCGCGGGTTGGCACCCCC
CAGTCCGTGGGGCCTAGTTGTTAGCATAGTTGTCCGCCGCCACTCATCCC
CACGACTTGGACGACTTCTTCAATATTTCGGGCGGCCGTGA
back to top