mRNA_Ecto-sp13_S_contig13785.2969.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13785.2969.1
Unique NamemRNA_Ecto-sp13_S_contig13785.2969.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13785.2969.1 vs. uniprot
Match: D7G0K0_ECTSI (Tyrosinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0K0_ECTSI)

HSP 1 Score: 493 bits (1270), Expect = 8.780e-173
Identity = 230/250 (92.00%), Postives = 241/250 (96.40%), Query Frame = 1
Query:   13 QGIEFFVQMHLDGAAVKDCDHWHDDAGIVTHHVGFTLLFEQALQVVDPSVSIPYWEYTIEAALGLANYGESQVFNPDWFGDASPDNSLHTVTDGRAISLSMLALQEAWDNVHNPYGLLRAPWNTDATPFVTRYDKINGVDSTDMVTCEEFQSCFESSSIAAMNNCLNAGIHGPVHNTLGGEWNNPEEEFTFQLGYSASVAILAKALWRQGYLRVPNVCLQGRDGPGNASTCITSCPAQVYESLGMTPYDV 762
            +GIEFFVQMHLDGAAVK+CDHWHDDAGIVTHHVGFTLLFEQALQVVDPSVSIPYWEYTIEAALGLANYGESQVF+P WFGDASPDNSLHTVTDGR   LS++  +EAWD VHNPYGLLRAPWNTD TPFVTRYDKINGVDSTDMVTCEEFQSCFESSSIAAMNNCLNAGIHGPVHNT+GGEWNNPEEEFTF+LGYSASVAILAKALWRQGYLRVPN CLQG+DGPGNASTCITSCPA++YESLGMTPYDV
Sbjct:   80 KGIEFFVQMHLDGAAVKECDHWHDDAGIVTHHVGFTLLFEQALQVVDPSVSIPYWEYTIEAALGLANYGESQVFHPGWFGDASPDNSLHTVTDGRWAFLSIM--KEAWDYVHNPYGLLRAPWNTDGTPFVTRYDKINGVDSTDMVTCEEFQSCFESSSIAAMNNCLNAGIHGPVHNTMGGEWNNPEEEFTFRLGYSASVAILAKALWRQGYLRVPNTCLQGKDGPGNASTCITSCPAELYESLGMTPYDV 327          
BLAST of mRNA_Ecto-sp13_S_contig13785.2969.1 vs. uniprot
Match: D7G0J9_ECTSI (PKD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J9_ECTSI)

HSP 1 Score: 371 bits (952), Expect = 5.740e-122
Identity = 163/250 (65.20%), Postives = 201/250 (80.40%), Query Frame = 1
Query:   13 QGIEFFVQMHLDGAAVKDCDHWHDDAGIVTHHVGFTLLFEQALQVVDPSVSIPYWEYTIEAALGLANYGESQVFNPDWFGDASPDNSLHTVTDGRAISLSMLALQEAWDNVHNPYGLLRAPWNTDATPFVTRYDKINGVDSTDMVTCEEFQSCFESSSIAAMNNCLNAGIHGPVHNTLGGEWNNPEEEFTFQLGYSASVAILAKALWRQGYLRVPNVCLQGRDGPGNASTCITSCPAQVYESLGMTPYDV 762
            +GI FFVQMHLDGA V DCDHWHDDAGI+THHVG+T+LFEQALQVVDPSV+IPYWEYTIE + GL +YGESQ+F PDWFGDASP+N++HTV +GR   L ++  Q+AWD VHNPYGLLR PWNTD TP+VTR++  N  D T +VTC  +Q+CF+ +++A + NCLN G HGPVH  +GGEWNNPEEE T  LGY+  V ++AK LWR+GYLR+P  C +   G G+ STC  SCP+++YE+LGMTPYDV
Sbjct:  227 KGISFFVQMHLDGAGVSDCDHWHDDAGIMTHHVGYTMLFEQALQVVDPSVTIPYWEYTIEYSQGLTDYGESQIFAPDWFGDASPNNAMHTVDNGRWAYLPVM--QDAWDYVHNPYGLLRTPWNTDPTPYVTRHNMTNAQDITGVVTCGMYQNCFDETTLAGLFNCLNGGTHGPVHIKMGGEWNNPEEELTNSLGYADEVPLMAKFLWRKGYLRMPTSCTEDEHGTGDDSTCRASCPSEIYENLGMTPYDV 474          
BLAST of mRNA_Ecto-sp13_S_contig13785.2969.1 vs. uniprot
Match: A0A6H5L3M0_9PHAE (PKD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3M0_9PHAE)

HSP 1 Score: 370 bits (950), Expect = 9.730e-122
Identity = 167/250 (66.80%), Postives = 197/250 (78.80%), Query Frame = 1
Query:   13 QGIEFFVQMHLDGAAVKDCDHWHDDAGIVTHHVGFTLLFEQALQVVDPSVSIPYWEYTIEAALGLANYGESQVFNPDWFGDASPDNSLHTVTDGRAISLSMLALQEAWDNVHNPYGLLRAPWNTDATPFVTRYDKINGVDSTDMVTCEEFQSCFESSSIAAMNNCLNAGIHGPVHNTLGGEWNNPEEEFTFQLGYSASVAILAKALWRQGYLRVPNVCLQGRDGPGNASTCITSCPAQVYESLGMTPYDV 762
            +GI FFVQMHLDGA VKDCDHWHDDAGI+THHVG+TL FEQALQVVDPSVSIPYWEYTIE+A GL  YGES +F  DWFG+ASPDNSLHTV  GR        L  A D VHNPYGLLR+PWN D TPFVTR++  NG D T MV+CE +QSCF+++++A MNNCLN G HGPVH  +GGEWN+PEE+   +LGY++++ +L K LWR+GYLR P  C    DG G++STC   CPA+VYE+LGMTPYDV
Sbjct:  225 KGINFFVQMHLDGAGVKDCDHWHDDAGIMTHHVGYTLQFEQALQVVDPSVSIPYWEYTIESAQGLTEYGESTIFAADWFGEASPDNSLHTVDKGR-----WAYLPGATDYVHNPYGLLRSPWNVDGTPFVTRFNLTNGEDKTSMVSCETYQSCFDATTLATMNNCLNGGTHGPVHIKVGGEWNDPEEDMATKLGYTSAIPLLTKFLWRKGYLRTPESCTAEEDGVGDSSTCRAGCPAEVYENLGMTPYDV 469          
BLAST of mRNA_Ecto-sp13_S_contig13785.2969.1 vs. uniprot
Match: D7FSP4_ECTSI (PKD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSP4_ECTSI)

HSP 1 Score: 345 bits (886), Expect = 7.650e-112
Identity = 157/255 (61.57%), Postives = 196/255 (76.86%), Query Frame = 1
Query:   13 QGIEFFVQMHLDGAAVKDCDHWHDDAGIVTHHVGFTLLFEQALQVVDPSVSIPYWEYTIEAALGLANYGESQVFNPDWFGDASPDNSLHTVTDGRAISLSMLALQEAWDNVHNPYGLLRAPWNTDATPFVTRYDKINGVDSTDMVTCEEFQSCFESSSIAAMNNCLNAGIHGPVHNTLGGEWNNPEEEFTFQLG-----YSASVAILAKALWRQGYLRVPNVCLQGRDGPGNASTCITSCPAQVYESLGMTPYDV 762
            +GI FFVQMHL+GA V DCDHWHDDAGI+THHVG+TLLFEQALQVVDP+V+IPYWEYTIEAA GL +Y  S+VF  DWFG+ASPDN LHTV  GR   L ++  ++AW  VHNPYGLLR+PWNTD TP+VTR++  N  D   +V+C+++QSCF+  ++A MNNCLN G HGPVH  +GGEWN+P+E     LG     Y+  V +++K LWR+GYLR+P  C    +G G+ASTC +SCPA++YES GM PYDV
Sbjct:  240 KGINFFVQMHLNGAGVSDCDHWHDDAGIMTHHVGYTLLFEQALQVVDPAVTIPYWEYTIEAAAGLEDYDSSEVFASDWFGEASPDNELHTVDKGRWAFLPVM--EDAWHYVHNPYGLLRSPWNTDPTPYVTRHNVTNNKDVQGVVSCDDYQSCFDKDNLADMNNCLNGGTHGPVHIKVGGEWNDPQEGIIQALGTLFGRYTNKVPLMSKYLWRKGYLRMPTSCSVESEGTGDASTCRSSCPAELYESKGMKPYDV 492          
BLAST of mRNA_Ecto-sp13_S_contig13785.2969.1 vs. uniprot
Match: A0A6H5KFJ6_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ6_9PHAE)

HSP 1 Score: 339 bits (870), Expect = 1.330e-111
Identity = 155/277 (55.96%), Postives = 193/277 (69.68%), Query Frame = 1
Query:   34 QMHLDGAAVKDCDHWHDDAGIVTHHVGFTLLFEQALQVVDPSVSIPYWEYTIEAAL---GLANYGESQVFNPDWFGDASPDNSLHTVTDGRAISLSMLALQ-------------------------------EAWDNVHNPYGLLRAPWNTDATPFVTRYDKINGVDSTDMVTCEEFQSCFESSSIAAMNNCLNAGIHGPVHNTLGGEWNNPEEEFTFQLGYSASVAILAKALWRQGYLRVPNVCLQGRDGPGNASTCITSCPAQVYESLGMTPYDV 762
            +MHLDGA V DCDHWHDDAGI+THHVG+T+LFEQALQVVDP+V+IPYWEYTIE      GL +YGESQ+F+PDWFGDASP+N++HTV +GR   L ++                                  +AWD VHNPYGLLR PWNTD TP+VTR++  N  D T +VTC  +Q+CF+ +++A + NCLN G HGPVH  +GGEWNNPEEE T  LGY+  V ++AK LWR+GYLR+P  C     G G+ STC  SCP+++YE+LGMTPYDV
Sbjct:  144 KMHLDGAGVSDCDHWHDDAGIMTHHVGYTMLFEQALQVVDPAVTIPYWEYTIECGCHSQGLTDYGESQIFDPDWFGDASPNNAMHTVDNGRWAYLPVMQASPAIAVLHCTLTGLIIYIHPTVDTIYRVAQDGDAWDYVHNPYGLLRTPWNTDPTPYVTRHNMTNAQDITSVVTCGMYQNCFDETTLAGLFNCLNGGTHGPVHIKMGGEWNNPEEELTNSLGYADEVPLMAKFLWRKGYLRIPTSCTVEEHGTGDDSTCRASCPSEIYENLGMTPYDV 420          
BLAST of mRNA_Ecto-sp13_S_contig13785.2969.1 vs. uniprot
Match: D7G0J8_ECTSI (Putative scytonemin-related tyrosinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J8_ECTSI)

HSP 1 Score: 333 bits (854), Expect = 7.270e-107
Identity = 153/250 (61.20%), Postives = 192/250 (76.80%), Query Frame = 1
Query:   13 QGIEFFVQMHLDGAAVKDCDHWHDDAGIVTHHVGFTLLFEQALQVVDPSVSIPYWEYTIEAALGLANYGESQVFNPDWFGDASPDNSLHTVTDGRAISLSMLALQEAWDNVHNPYGLLRAPWNTDATPFVTRYDKINGVDSTDMVTCEEFQSCFESSSIAAMNNCLNAGIHGPVHNTLGGEWNNPEEEFTFQLGYSASVAILAKALWRQGYLRVPNVCLQGRDGPGNASTCITSCPAQVYESLGMTPYDV 762
            +GI++FVQMHLDGA VKDCDHWHDDAGI+THHVG+TL FEQA+Q+V+PSVSIPYWEYTIEA  GL +YGES VFN DWFG+ SP N LHTVT GR   L +    +AWD+VHNPYGLLR+PWN + TPFVTR++  + + +T MV+C  + SCF+S+++A MN+CLN   HGPVH   GGEW+  EE+F  ++GY  SV ++ K LWR+GYL +P+ C QG       + C TSCPA++YES GMTPYDV
Sbjct:  226 KGIDYFVQMHLDGAGVKDCDHWHDDAGIMTHHVGYTLQFEQAMQLVNPSVSIPYWEYTIEATEGLPSYGESTVFNDDWFGEFSPRNELHTVTKGRWAFLPIQP--DAWDSVHNPYGLLRSPWNLNPTPFVTRHNATSSMSATAMVSCSVYLSCFDSTTLADMNSCLNGETHGPVHILAGGEWHAAEEDFIQKVGYYESVPLVTKFLWRKGYLSIPDTCDQG-------TPCQTSCPAKLYESKGMTPYDV 466          
BLAST of mRNA_Ecto-sp13_S_contig13785.2969.1 vs. uniprot
Match: A0A6H5LKB4_9PHAE (TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LKB4_9PHAE)

HSP 1 Score: 325 bits (833), Expect = 2.710e-104
Identity = 148/250 (59.20%), Postives = 190/250 (76.00%), Query Frame = 1
Query:   13 QGIEFFVQMHLDGAAVKDCDHWHDDAGIVTHHVGFTLLFEQALQVVDPSVSIPYWEYTIEAALGLANYGESQVFNPDWFGDASPDNSLHTVTDGRAISLSMLALQEAWDNVHNPYGLLRAPWNTDATPFVTRYDKINGVDSTDMVTCEEFQSCFESSSIAAMNNCLNAGIHGPVHNTLGGEWNNPEEEFTFQLGYSASVAILAKALWRQGYLRVPNVCLQGRDGPGNASTCITSCPAQVYESLGMTPYDV 762
            +GI++FVQ+HLDGA VKDCDHWHDDAGI+THHVGFTL FEQA+Q+VDPSV+IPYWEY+IEA   L +YG+S VF+ DWFG+ SP+N  HT+T GR   L +   ++AWD+VHNPYGLLR+PWN D TPFVTR++  + + +TDMV+C  + SCF SSS++ MN CLN   HGPVH   GGEW+  EE+F  ++GY  SV ++ K LWR+GYL +P+ C  G        +C TSCP+++YES GMTPYDV
Sbjct:  226 KGIDYFVQLHLDGAGVKDCDHWHDDAGIMTHHVGFTLQFEQAMQLVDPSVTIPYWEYSIEATDDLDSYGDSIVFDHDWFGEFSPNNDFHTMTKGRWAFLRVQ--RDAWDSVHNPYGLLRSPWNVDDTPFVTRHNTTSSMTATDMVSCSVYSSCFASSSLSIMNACLNGETHGPVHILTGGEWHAAEEDFIQKVGYYESVPLVTKFLWRKGYLSIPDKCEVGE-------SCQTSCPSELYESKGMTPYDV 466          
BLAST of mRNA_Ecto-sp13_S_contig13785.2969.1 vs. uniprot
Match: A0A7S2CGQ1_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CGQ1_9STRA)

HSP 1 Score: 226 bits (577), Expect = 2.100e-66
Identity = 111/251 (44.22%), Postives = 154/251 (61.35%), Query Frame = 1
Query:   19 IEFFVQMHLDGAAVKDCDHWHDDAGIVTHHVGFTLLFEQALQVVDPSVSIPYWEYTIEAALGL-ANYGESQVFNPDWFGDASPDNSLHTVTDGRAISLSMLALQEAWDNVHNPYGLLRAPWNTDATPFVTRYDKINGVDS-TDMVTCEEFQSCFESSSIAAMNNCLNAGIHGPVHNTLGGEWNNPEEEFTF-QLGYSASVAILAKALWRQGYLRVPNVCLQGRDGPGNASTCITSCPAQVYESLGMTPYDV 762
            I +FV+ HL GAA  DCDHWHD+AGI+THH+ FTL  EQ LQ VDP++S+PYWEYT ++ L    ++  S+VF  +WFG ASP ++ H VT+GR     +++    + N+ N YGLLR+PWNT+ T + TRYDK+ G +   +  TC +F  C +  SIA +N CLN   HGPVH  +GG+W +        + G +    +LAK LWR GY++ P+ C        ++S C  SCPA     L  TPY +
Sbjct:  213 IHYFVKKHLHGAAALDCDHWHDNAGIMTHHLAFTLELEQTLQAVDPAISVPYWEYTKDSILHADGDWESSEVFLDEWFGVASPTSNDHVVTEGRWAYAPIMSDASDYSNITNSYGLLRSPWNTNPTAYFTRYDKVLGNEFYNNFPTCTQFSECIKRPSIAQINECLNGETHGPVHIMIGGQWGSVSSAVAMKEYGLAPQHLLLAKNLWRHGYVKCPDSC------DDSSSECKCSCPAS---QLDTTPYKI 454          
BLAST of mRNA_Ecto-sp13_S_contig13785.2969.1 vs. uniprot
Match: A0A7S2MH92_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MH92_9STRA)

HSP 1 Score: 223 bits (569), Expect = 5.910e-65
Identity = 115/273 (42.12%), Postives = 163/273 (59.71%), Query Frame = 1
Query:   13 QGIEFFVQMHLDGAAVKDCDHWHDDAGIVTHHVGFTLLFEQALQVVDPSVSIPYWEYTIEAAL------GLANYGE-----SQVFNPDWFGDASPDNSLHTVTDGRAISLSMLALQEAWDNVHNPYGLLRAPWNTDAT-PFVTRYDKINGVDSTDMVTCEEFQSCFESSSIAAMNNCLNAGIHGPVHNTLGGEW-------NNPEEEFTFQLGYSASVA----ILAKALWRQGYLRVPNVCLQGRDGPGNASTCITSCPAQVYESLGMTPYDV 762
            +GIE+F++ HL G A + CDHWHDDAGI+THHVGFT+ FE+ LQVVDP+V++PYW+YTI++            + E     S +F  DWFG  SPD   H V  G   ++++ A    + ++ NPYGLLR+PWNTD+T   + R  +++G D+  MV+C ++Q CFES ++A MN CLN  +HGP+H  LGG+W       NN         G  A++A    + +K LWR GYLR P  C        ++  C+ SCP +     G +PYD+
Sbjct:  224 RGIEYFIREHLHGGADRACDHWHDDAGIMTHHVGFTMEFEKVLQVVDPTVTVPYWDYTIDSYRYCNPDSSFTCWREEILQKSPLFWDDWFGAGSPDTVDHAVHQGLWGNVTVFAAAGNYSSITNPYGLLRSPWNTDSTLNALRRSSQVDGFDAMGMVSCSDWQRCFESKNLATMNTCLNGEVHGPIHILLGGQWHTNLPILNNSAIWSGVGDGEGANLAGEQLLFSKLLWRSGYLRCPESC----SADTSSEDCVCSCPTEYRH--GRSPYDI 490          
BLAST of mRNA_Ecto-sp13_S_contig13785.2969.1 vs. uniprot
Match: A0A7S3Y4W0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y4W0_HETAK)

HSP 1 Score: 219 bits (557), Expect = 6.910e-65
Identity = 110/261 (42.15%), Postives = 144/261 (55.17%), Query Frame = 1
Query:   13 QGIEFFVQMHLDGAAVKDCDHWHDDAGIVTHHVGFTLLFEQALQVVDPSVSIPYWEYTIEAALGLANYGESQVFNPDWFGDASPDNSLHTVTDGRAISLSMLALQEAWDNVHNPYGLLRAPWNTDATPFVTRYDKINGVDSTDMVTCEEFQSCFESSSIAAMNNCLNAGIHGPVHNTLGGEWNNPEE--EFTFQLGYS---------ASVAILAKALWRQGYLRVPNVCLQGRDGPGNASTCITSCPAQVYESLGMTPYDV 762
            + I  F   HLDGA   +CDHWHDDAG+  HH GFT+ FE+ +Q++DP VS+PYWEYT++A   L     S +F  DWFG  SP N  H V  GR   L +    +   +V N YGLLRAPWNTD+TP++TRY  +N         C  FQ   + +++  +N  LN   HGPVH  +GG+W   +   +    +GY+         AS  ++ K LWR GY R P  C       G    C  S P ++YE LGMTPYDV
Sbjct:  213 RSIGSFQVQHLDGAGRMECDHWHDDAGLAAHHFGFTIQFEEVMQLIDPLVSLPYWEYTLDAE-NLDELEHSPIFRDDWFGKMSPTNEKHIVDTGRWKFLEIGYSADFDFDVQNAYGLLRAPWNTDSTPYLTRYKYVNQGSVFSTPGCSIFQQVMQKATMREINALLNGATHGPVHIEIGGQWGLSDYYIDLLSSMGYAGIADEAKPVASQVLIFKVLWRMGYARCPTTCSSAEAKTGE---CSCSAPRELYEDLGMTPYDV 469          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13785.2969.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0K0_ECTSI8.780e-17392.00Tyrosinase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D7G0J9_ECTSI5.740e-12265.20PKD domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L3M0_9PHAE9.730e-12266.80PKD domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FSP4_ECTSI7.650e-11261.57PKD domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5KFJ6_9PHAE1.330e-11155.96TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7G0J8_ECTSI7.270e-10761.20Putative scytonemin-related tyrosinase n=1 Tax=Ect... [more]
A0A6H5LKB4_9PHAE2.710e-10459.20TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A7S2CGQ1_9STRA2.100e-6644.22Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A7S2MH92_9STRA5.910e-6542.12Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A7S3Y4W0_HETAK6.910e-6542.15Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13785contigEcto-sp13_S_contig13785:1..4201 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score494.2
Seed ortholog evalue3.6e-137
Seed eggNOG ortholog2880.D7G0K0
Model size762
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.Common central domain of tyrosinase
EggNOG OGs2D2AI@1,2SM4K@2759
Ec32 ortholog descriptionUncharacterised domain, di-copper centre
Ec32 orthologEc-03_003150.1
Cds size762
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13785.2969.1prot_Ecto-sp13_S_contig13785.2969.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13785 1..4201 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462735.8627672-CDS-Ecto-sp13_S_contig13785:0..361681462735.8627672-CDS-Ecto-sp13_S_contig13785:0..36Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13785 1..36 -
1681462735.878041-CDS-Ecto-sp13_S_contig13785:549..6831681462735.878041-CDS-Ecto-sp13_S_contig13785:549..683Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13785 550..683 -
1681462735.8871534-CDS-Ecto-sp13_S_contig13785:1472..16351681462735.8871534-CDS-Ecto-sp13_S_contig13785:1472..1635Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13785 1473..1635 -
1681462735.8965755-CDS-Ecto-sp13_S_contig13785:2144..22771681462735.8965755-CDS-Ecto-sp13_S_contig13785:2144..2277Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13785 2145..2277 -
1681462735.9045796-CDS-Ecto-sp13_S_contig13785:2709..28121681462735.9045796-CDS-Ecto-sp13_S_contig13785:2709..2812Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13785 2710..2812 -
1681462735.9126196-CDS-Ecto-sp13_S_contig13785:3516..36181681462735.9126196-CDS-Ecto-sp13_S_contig13785:3516..3618Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13785 3517..3618 -
1681462735.9205413-CDS-Ecto-sp13_S_contig13785:4110..42011681462735.9205413-CDS-Ecto-sp13_S_contig13785:4110..4201Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13785 4111..4201 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13785.2969.1

>prot_Ecto-sp13_S_contig13785.2969.1 ID=prot_Ecto-sp13_S_contig13785.2969.1|Name=mRNA_Ecto-sp13_S_contig13785.2969.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=254bp
MCASQGIEFFVQMHLDGAAVKDCDHWHDDAGIVTHHVGFTLLFEQALQVV
DPSVSIPYWEYTIEAALGLANYGESQVFNPDWFGDASPDNSLHTVTDGRA
ISLSMLALQEAWDNVHNPYGLLRAPWNTDATPFVTRYDKINGVDSTDMVT
CEEFQSCFESSSIAAMNNCLNAGIHGPVHNTLGGEWNNPEEEFTFQLGYS
ASVAILAKALWRQGYLRVPNVCLQGRDGPGNASTCITSCPAQVYESLGMT
PYDV
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mRNA from alignment at Ecto-sp13_S_contig13785:1..4201-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13785.2969.1 ID=mRNA_Ecto-sp13_S_contig13785.2969.1|Name=mRNA_Ecto-sp13_S_contig13785.2969.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4201bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13785:1..4201- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCGCATCCCAGGGTATCGAATTTTTCGTGCAGATGCACCTGGATGG GGCCGCTGTTAAGGACTGTGACCATTGGCACGACGATGCGGGTGAGAGAT GAGGAGAAGGAGGGCAACCAACTGAAGTTGTCCAGGGCGGTTCGCCCAGA GCGCTTGCATCACGCGTCGCCCTCCGTCCGAAGGACGAACAAATAATCAA ATGGCGTTATTTCCGGCAGATTCGCAAGTAGCTTTTCGCCGCTTCACCGG TTGCCTCGGATGTGACCCGGCTCGGCTGGACAGAAATACTTCGGCCGTCT TCATTCGGGTGCAGCTCTTTTGGGGGGATTTTGGGTCTCTCCTTAACCAC GCCTGACCTGGTCGCGTTTGAAGCTTATTGGATGACAACGCGGTGCGGTA GGCAACCAGTTGACGTGGGCTCGGAGTGAGCCGACACATTTTCGAAGCAG CCCGTAGGATGTAGGATACATTAAAAACAGCTCGTTAGTAGCGTAGGTTG TTGCTCACGCGGCGGCATCAGCTTACAACGACACCATTCCGGACGAAATT GTTTGACAAACATTGCCGGTTGTCGCCTGGCAGGCATCGTGACGCACCAC GTGGGGTTCACGTTGCTGTTCGAGCAGGCCCTCCAGGTGGTGGATCCCTC CGTCTCAATACCCTACTGGGAGTACACCATCGAAGGTATCTTGGGATGGG ACAACGTGGTTGGCTCAAGGTTTGCTGAGCTGCAACACCTGGTTTTCTGC TGCTTGTCATGATTTCTTGTTGCTGCTTGCTGGTGGTGTTATCGCAGCTT GTCGATTGACGTCGAAGAAGAATGGTCGATGGATCCATCCCGCCGTATGT ATCCAGGATGCCCACAATGCAGGCCATGATTAATTCTCATCCCATCTATT GTGGACAGCTCACGTTCGTTTGGTGTACCCGTGGGCGTGCGAGGCTGGTG TCAAACAGAAACCCCTTCTGCGGTGCAAGCTGGCGGCCTTGTAATAGCGA CAAATTTGAAGCAAAATACACTCGCGAAAACCCGTTTTCCGCAGCAGCGT AGCAGTCAGGCTTGAGCCCCTGACCTTGCCCAGCCAATATGACGGAACAC GCCGTACGGTAGCAGAGATGTGCTTCTTTGCGCACATCCTAGAATTGGCA TTTCAAGACGGGTGGCGGGGCAGAAAACGTTCTTCAACTGTTCTCGAAAT AGGGTGGCGGCTTCCAATAACAACCATTCCACAGCGCCGTGGAAAAGGAA TGCAGAAATTCGCTGACACCCGAGTTCCCGACCTCTTCGCCTGAAGGCTG CACAGGCACCAAGGGAGCTACGTCATGCTTCACTTGTTGTGGTGTCTTGA CTGCTCTGTTGTGTTCCTCTCTATTCCGTCGGATGACAGCGGCGCTGGGC TTGGCGAACTACGGAGAATCTCAGGTATTTAACCCTGACTGGTTCGGCGA CGCCTCTCCAGACAACTCCCTTCACACGGTGACCGACGGCCGGTGGGCCT TCCTCTCGATCATGAAGGCGAGGACATAAGACAACAAATCCCCAAGCAGT GCAAAGAAATGTCCCAACCCAAGAGTGCTGTGCAAGCTAACTGACATATC CAATCATGTCAAGCCTAAGAGTACAAGGGCTGTCCTCTCGCGCTAGAGGG TAGTGTGCTAAGATTTACTGTCGCTTTGATGTTCGTGTCGGTAGTCATGG TGTCGTTGTTCTCTAGGATGCCCGTATTCATTGTTGGAGGTTGCCTTGGG AAAAAGTCTTGACCTGAATTGCCTGCTTCTCCTGCTTCGTTCTCCCACAC GGTCACTGGCGGCCGCACTAGAACCTGTCAGCATAGATCTCCAACGCCGG AACGTGTCATGGAGCATGAAAAACGTTCGCTCCAATGGGATATCGTTCCC TCGCGCTATCGCTTGTGCTTGAAGCGCGATTTCTTTGTCGATGCTCGCTT TGCAGGAAGCGTGGGACAATGTGCACAATCCTTACGGCCTTCTGCGTGCT CCTTGGAACACGGACGCGACCCCTTTCGTCACTCGCTACGACAAAATCAA TGGCGTGGTCAGTATCAGGCTTCACTTTGGTCAGGGCGAACTGATCTTCA GAATCGTCCATCCACACTCGTTGGTGTTGACGATGTTGCCGCTAGATATT TTTCTACTCCGTCGTGCCCCTACTCTGTTCGTCCGGAAGAACATGGTTTT CCGTGCGTCGCGTGCCACTCCTGCCTTGGTGCCCCCCCCCCGGCTGGACG TAGTCCGGATATGTTCCACACAGGCAGAAAATCTCACACCAAGGGGTTGG TTGTGTTGAGAAGCACGACGACCACCAGACCAACAGTCAGCGCTGACTGG TGGTCTAGTGATCATCGTGCTTCTCAACAGGTTGATCCGAAACGAAACAT CCTTGCCTCCAGTTTTTGCCGATCGCTAGGCAGAAAAGCATGCGGCCCCC GAAAGAAGTATCTGGATCCGTCCGTGATTCAAAGCGCCCAAATCCAGCCG GCTCAAGGACGGTCTCTCCTCCCTGATGACGTCTGCGTGATAAATGCCAC TGAACTATCCAAGTAGGACTCGACGGACATGGTGACGTGTGAAGAGTTTC AGTCGTGCTTTGAGTCCTCTTCCATCGCGGCGATGAACAACTGTCTGAAC GCGGGCATTCACGGGCCAGTGCACAACACATTGGGCGGGGAGTGGAACAA CCCCGAAGAGGAGTTCACGTTTCAATTAGGTACGGTGTGTCCACAAGTAC TGGGGTGTCAACAGGCAAGTTGCTTGGGTGTGAAGGAAAAGGACAACCCA GAGGATTATTTAGTCGAAATGGGACGGCGAGGGTGTGTGAGAGAGAAAGT CGGCAAGAGAGAGAGAGGTATTCGCTCTTGTCCCATCCTTGTACAATCAC CCGACGTAGACATTATTGTCCGCCGTCCACACTTATTTGCAGAACCTTGT ACCATGTGAAGCTTTCGAGTCGATAGTAGGATCCCAGTGCACGGGCGGCA AAACTGCATGTTTGTGAACCTCAAGGGCACAGAGTGTTTTACGGGTGGTG AAGGTCATTGAAGGGGGTGCAGCGATGGCGGCAGGGTTTGTTGGGACCAC CGGCCTCTATGCGGGTAGGGCACCTGGCTTCGAGAGTGCTTCCCTTCTTG CGACACCCCGTCTAGGTTTCTAGTTGAAGGAACAAGCATCACTCGCGAGC GATGAACGGTATATCCCTCCTTTTTGAGAAAAATGTGGCATGGCGCACTC TCTGATTTTCGTCCCCATCCCTGCCTATGGTATAAGGGCAATACCTCGGG TGGAAAGGATATCGCCACCCTCTCGGTCAGGGTGACTTGTTACATTCCGA CTCTTTCTCCCGAAAAGGTGGCACAATATGCTAAGAACCGCTGTTGAAAC AAGTTGACCAGCGCACCGCAGGCCGGTGCGAACGAGCACGCATGCACGGC GGTCTGTTTCTCATGATCTGGACGCAACCGCGACGCGTGTTTTTACCGCA CCGTTGCGGCCACGGCAGGATACTCTGCCTCCGTCGCGATCTTGGCCAAG GCCTTGTGGAGACAAGGATACCTCCGCGTGCCGAACGTCTGTTTGCAGGG TAGAGATGGACCCGGCAACGCGTCCACGTGCATCACTAGCTGCCCGGCAC AGGTACGTCGGCCGCTCCCTTAAAAATTGGAGATTCGATTATCACGAGGT TTTCACTGCATTCGTGGCTTTGCAACGTCTCCAACTTTTTTCACGCCGTG TACGGAGAGGAAATCGTTCCCCGTTCGGCGCCGATTTTTCGCATTGACGT CGTTCCACATTTTGGGCCACCCATATATTTCTTGCCGTGTTTCCCGACTT TCTGGGCATTCCGCTTCACTCTTCGCTGGCTAAATGGCACGTGTTTCCCG CTTTTTTCGCCTCTTTTAGGTCCGTCAGTTGCATGATGCCAGTGTCTGAC CCCCATTTCTCTCAGTTAAATGGGGGAGTTGCATCGCGACATCGAAGTGG CACGAGACGCGCAGCAGAGGGGCATCCAATGCTGTGTAACCATTGTATCG GAAAAAAAGAGGGCGCTCCTTGCCATTGATCGCTTGATTGCCCCGGCGAA TATTCCAAAACTTCAACTGGCTGTCTGGCCGTCTGTCTGCGTTCCTCTCT TTTATCTTGTTACAGGTGTACGAGTCGTTGGGGATGACGCCGTACGACGT G
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13785:1..4201-

>mRNA_Ecto-sp13_S_contig13785.2969.1 ID=mRNA_Ecto-sp13_S_contig13785.2969.1|Name=mRNA_Ecto-sp13_S_contig13785.2969.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=762bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13785:1..4201- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCGCATCCCAGGGTATCGAATTTTTCGTGCAGATGCACCTGGATGG
GGCCGCTGTTAAGGACTGTGACCATTGGCACGACGATGCGGGCATCGTGA
CGCACCACGTGGGGTTCACGTTGCTGTTCGAGCAGGCCCTCCAGGTGGTG
GATCCCTCCGTCTCAATACCCTACTGGGAGTACACCATCGAAGCGGCGCT
GGGCTTGGCGAACTACGGAGAATCTCAGGTATTTAACCCTGACTGGTTCG
GCGACGCCTCTCCAGACAACTCCCTTCACACGGTGACCGACGGCCGCGCG
ATTTCTTTGTCGATGCTCGCTTTGCAGGAAGCGTGGGACAATGTGCACAA
TCCTTACGGCCTTCTGCGTGCTCCTTGGAACACGGACGCGACCCCTTTCG
TCACTCGCTACGACAAAATCAATGGCGTGGACTCGACGGACATGGTGACG
TGTGAAGAGTTTCAGTCGTGCTTTGAGTCCTCTTCCATCGCGGCGATGAA
CAACTGTCTGAACGCGGGCATTCACGGGCCAGTGCACAACACATTGGGCG
GGGAGTGGAACAACCCCGAAGAGGAGTTCACGTTTCAATTAGGATACTCT
GCCTCCGTCGCGATCTTGGCCAAGGCCTTGTGGAGACAAGGATACCTCCG
CGTGCCGAACGTCTGTTTGCAGGGTAGAGATGGACCCGGCAACGCGTCCA
CGTGCATCACTAGCTGCCCGGCACAGGTGTACGAGTCGTTGGGGATGACG
CCGTACGACGTG
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