mRNA_Ecto-sp13_S_contig13776.2967.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13776.2967.1
Unique NamemRNA_Ecto-sp13_S_contig13776.2967.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13776.2967.1 vs. uniprot
Match: A0A6H5L369_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L369_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 2.740e-21
Identity = 48/52 (92.31%), Postives = 51/52 (98.08%), Query Frame = 1 
Query:    1 GSTLLGSTNAAVVAAQKERHSADAGVQCSRPAQSSDQLMGQVARGGCGCTVM 156
            GSTLLGS NAAVVAAQK+RHSADAGVQCSRPA+SSDQL+GQVARGGCGCTVM
Sbjct: 1594 GSTLLGSANAAVVAAQKKRHSADAGVQCSRPAESSDQLVGQVARGGCGCTVM 1645
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13776.2967.1 vs. uniprot
Match: D8LDX9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDX9_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 1.270e-18
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:    1 GSTLLGSTNAAVVAAQKERHSADAGVQCSRPAQSSDQLMGQVARGGCGCTVM 156
            GSTLLGSTNAA   AQK+RHSADAGVQCSRPA+SSDQL+GQVARGGCGCTVM
Sbjct:  534 GSTLLGSTNAA---AQKKRHSADAGVQCSRPAESSDQLVGQVARGGCGCTVM 582
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13776.2967.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L369_9PHAE2.740e-2192.31Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LDX9_ECTSI1.270e-1888.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13776contigEcto-sp13_S_contig13776:4130..4462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size334
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size159
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462735.5927486-CDS-Ecto-sp13_S_contig13776:4129..42881681462735.5927486-CDS-Ecto-sp13_S_contig13776:4129..4288Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13776 4130..4288 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462735.6061087-UTR-Ecto-sp13_S_contig13776:4288..44621681462735.6061087-UTR-Ecto-sp13_S_contig13776:4288..4462Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13776 4289..4462 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13776.2967.1prot_Ecto-sp13_S_contig13776.2967.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13776 4130..4288 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13776.2967.1

>prot_Ecto-sp13_S_contig13776.2967.1 ID=prot_Ecto-sp13_S_contig13776.2967.1|Name=mRNA_Ecto-sp13_S_contig13776.2967.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=53bp
GSTLLGSTNAAVVAAQKERHSADAGVQCSRPAQSSDQLMGQVARGGCGCT
VM*
back to top

mRNA from alignment at Ecto-sp13_S_contig13776:4130..4462+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13776.2967.1 ID=mRNA_Ecto-sp13_S_contig13776.2967.1|Name=mRNA_Ecto-sp13_S_contig13776.2967.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13776:4130..4462+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCAGTACCCTGTTGGGCTCGACGAACGCTGCTGTAGTAGCAGCCCAGAA
GGAGCGGCACTCAGCTGACGCTGGGGTGCAGTGCTCGCGGCCGGCCCAGT
CAAGCGATCAGTTGATGGGCCAGGTGGCCCGAGGGGGTTGTGGATGTACA
GTCATGTGATTTCCTTTGTAACGTCGGCAAACGCGCCGTGACCCTTTATT
GGAGTATACACGTATACACGTGTTGGCCGAGTGATTCCGGGGGATGTAGG
GAAGGAATTTCACCGTTCCGCAGTTCCGACAACCTCGTATGCGAAAAGAT
TGCCGGTGTGCCTCGCCTACGAGAGAAAGACAT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13776:4130..4462+

>mRNA_Ecto-sp13_S_contig13776.2967.1 ID=mRNA_Ecto-sp13_S_contig13776.2967.1|Name=mRNA_Ecto-sp13_S_contig13776.2967.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=159bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13776:4130..4462+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCAGTACCCTGTTGGGCTCGACGAACGCTGCTGTAGTAGCAGCCCAGAA
GGAGCGGCACTCAGCTGACGCTGGGGTGCAGTGCTCGCGGCCGGCCCAGT
CAAGCGATCAGTTGATGGGCCAGGTGGCCCGAGGGGGTTGTGGATGTACA
GTCATGTGA
back to top