mRNA_Ecto-sp13_S_contig13776.2966.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13776.2966.1
Unique NamemRNA_Ecto-sp13_S_contig13776.2966.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13776.2966.1 vs. uniprot
Match: A0A6H5L369_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L369_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.030e-24
Identity = 68/89 (76.40%), Postives = 70/89 (78.65%), Query Frame = 1 
Query:    1 GGSPNDGVVVA---HRATGGSGGDAGPADGSGDLQSRNKK-KKNRVAPIDFDNTKTRPPAAETSTVAGREGASTATAGSSGDDGGRNFA 255
            GG   DGVVVA   HR  GGSGGDAGP DGSGDLQSRNKK KKNRVAPI   NTKTRPPA E S V GR+G STATAGS+GDDGGR FA
Sbjct: 1497 GGFAKDGVVVAPHRHRVAGGSGGDAGPPDGSGDLQSRNKKQKKNRVAPIGLVNTKTRPPAEEASIVPGRKGDSTATAGSNGDDGGRTFA 1585
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BLAST of mRNA_Ecto-sp13_S_contig13776.2966.1 vs. uniprot
Match: D8LDX9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDX9_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 2.560e-22
Identity = 65/85 (76.47%), Postives = 67/85 (78.82%), Query Frame = 1 
Query:   16 DGVVVA---HRATGGSGGDAGPADGSGDLQSRNKK--KKNRVAPIDFDNTKTRPPAAETSTVAGREGASTATAGSSGDDGGRNFA 255
            DG VVA   HR  GGSGGDAGP DGSGDL+SRN K  KKNRVAPID  NTKTRPPA E S VAGREGASTATA S+GD GG NFA
Sbjct:  441 DGNVVAPRRHRVAGGSGGDAGPPDGSGDLRSRNNKNKKKNRVAPIDLVNTKTRPPAEEASIVAGREGASTATACSNGDGGGINFA 525
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13776.2966.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L369_9PHAE1.030e-2476.40Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LDX9_ECTSI2.560e-2276.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13776contigEcto-sp13_S_contig13776:3851..4105 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size255
Hectar predicted targeting categoryother localisation
Exons1
Cds size255
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462735.550469-CDS-Ecto-sp13_S_contig13776:3850..41051681462735.550469-CDS-Ecto-sp13_S_contig13776:3850..4105Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13776 3851..4105 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13776.2966.1prot_Ecto-sp13_S_contig13776.2966.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13776 3851..4105 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13776.2966.1

>prot_Ecto-sp13_S_contig13776.2966.1 ID=prot_Ecto-sp13_S_contig13776.2966.1|Name=mRNA_Ecto-sp13_S_contig13776.2966.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=85bp
GGSPNDGVVVAHRATGGSGGDAGPADGSGDLQSRNKKKKNRVAPIDFDNT
KTRPPAAETSTVAGREGASTATAGSSGDDGGRNFA
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mRNA from alignment at Ecto-sp13_S_contig13776:3851..4105+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13776.2966.1 ID=mRNA_Ecto-sp13_S_contig13776.2966.1|Name=mRNA_Ecto-sp13_S_contig13776.2966.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13776:3851..4105+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGGTTCTCCTAACGACGGCGTCGTTGTTGCGCACCGTGCTACTGGCGG
CAGCGGCGGCGATGCAGGTCCCGCTGACGGCAGCGGTGACCTCCAGTCCA
GAAACAAGAAGAAGAAGAATCGAGTCGCTCCCATCGACTTTGACAACACG
AAAACTCGTCCACCCGCGGCGGAAACGAGCACCGTTGCGGGACGCGAGGG
GGCTTCGACAGCGACAGCCGGCAGTAGTGGTGATGATGGCGGAAGAAACT
TCGCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13776:3851..4105+

>mRNA_Ecto-sp13_S_contig13776.2966.1 ID=mRNA_Ecto-sp13_S_contig13776.2966.1|Name=mRNA_Ecto-sp13_S_contig13776.2966.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13776:3851..4105+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGGTTCTCCTAACGACGGCGTCGTTGTTGCGCACCGTGCTACTGGCGG
CAGCGGCGGCGATGCAGGTCCCGCTGACGGCAGCGGTGACCTCCAGTCCA
GAAACAAGAAGAAGAAGAATCGAGTCGCTCCCATCGACTTTGACAACACG
AAAACTCGTCCACCCGCGGCGGAAACGAGCACCGTTGCGGGACGCGAGGG
GGCTTCGACAGCGACAGCCGGCAGTAGTGGTGATGATGGCGGAAGAAACT
TCGCT
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