mRNA_Ecto-sp13_S_contig13776.2964.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13776.2964.1
Unique NamemRNA_Ecto-sp13_S_contig13776.2964.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13776.2964.1 vs. uniprot
Match: A0A6H5L369_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L369_9PHAE)

HSP 1 Score: 263 bits (672), Expect = 1.080e-78
Identity = 131/149 (87.92%), Postives = 135/149 (90.60%), Query Frame = 1 
Query:    1 VVVKVLADGKRDATGWEAFIREWGVLKYLQEEGRVGGREPLSVGLVCAFETKRSLVLSIPAGSRTLREVGQHMHSERRSKKSRISDGGVFNDQVESLATQACRAVGWLHHHGLISGDVTPDNFVLLSGGXXXXXXXXXSGDRDSDKGYS 447
            VVVKVLADGKRDATGWEAFIREWGVL+YLQEEGRV GREPLSVGLVCAFET+RSLVLSIPAGSRTLREVGQHMHSERRSKKSRISDGGVFNDQVESLATQACRAVGWLHHHGLISGDVTPDNF+LLS G         SG   SDKG+S
Sbjct:  839 VVVKVLADGKRDATGWEAFIREWGVLEYLQEEGRVSGREPLSVGLVCAFETERSLVLSIPAGSRTLREVGQHMHSERRSKKSRISDGGVFNDQVESLATQACRAVGWLHHHGLISGDVTPDNFILLSRGGGGTGRSSTSGGCHSDKGHS 987
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BLAST of mRNA_Ecto-sp13_S_contig13776.2964.1 vs. uniprot
Match: D8LDY0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDY0_ECTSI)

HSP 1 Score: 179 bits (455), Expect = 7.610e-50
Identity = 87/100 (87.00%), Postives = 94/100 (94.00%), Query Frame = 1 
Query:    1 VVVKVLADGKRDATGWEAFIREWGVLKYLQEEGRVGGREPLSVGLVCAFETKRSLVLSIPAGSRTLREVGQHMHSERRSKKSRISDGGVFNDQVESLATQ 300
            VVVKVLADGKRDATGWEAFIREWGVLKYLQEEGRVGGREPLSVGLVCAFET+RSLVLSIPAGSRTL+EVGQ MHSERRSKK+ +SDGGVFNDQ +   ++
Sbjct:  695 VVVKVLADGKRDATGWEAFIREWGVLKYLQEEGRVGGREPLSVGLVCAFETERSLVLSIPAGSRTLKEVGQQMHSERRSKKNSVSDGGVFNDQPDGSCSK 794
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13776.2964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L369_9PHAE1.080e-7887.92Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LDY0_ECTSI7.610e-5087.00Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13776contigEcto-sp13_S_contig13776:2..1310 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size449
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_002510.1
Cds size447
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462735.3468635-CDS-Ecto-sp13_S_contig13776:1..911681462735.3468635-CDS-Ecto-sp13_S_contig13776:1..91Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13776 2..91 +
1681462735.3595479-CDS-Ecto-sp13_S_contig13776:593..7821681462735.3595479-CDS-Ecto-sp13_S_contig13776:593..782Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13776 594..782 +
1681462735.3706994-CDS-Ecto-sp13_S_contig13776:1140..13081681462735.3706994-CDS-Ecto-sp13_S_contig13776:1140..1308Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13776 1141..1308 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13776.2964.1prot_Ecto-sp13_S_contig13776.2964.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13776 2..1308 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13776.2964.1

>prot_Ecto-sp13_S_contig13776.2964.1 ID=prot_Ecto-sp13_S_contig13776.2964.1|Name=mRNA_Ecto-sp13_S_contig13776.2964.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=149bp
VVVKVLADGKRDATGWEAFIREWGVLKYLQEEGRVGGREPLSVGLVCAFE
TKRSLVLSIPAGSRTLREVGQHMHSERRSKKSRISDGGVFNDQVESLATQ
ACRAVGWLHHHGLISGDVTPDNFVLLSGGGGGTGSSNNSGDRDSDKGYS
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mRNA from alignment at Ecto-sp13_S_contig13776:2..1310+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13776.2964.1 ID=mRNA_Ecto-sp13_S_contig13776.2964.1|Name=mRNA_Ecto-sp13_S_contig13776.2964.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13776:2..1310+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGTGGTGAAGGTCCTGGCCGACGGGAAGCGCGACGCGACGGGCTGGGA
GGCGTTCATCCGGGAGTGGGGGGTGCTCAAGTACCTCCAGGTCAGTGGGG
CTGAGCCGATCTTAGGCGACTTGTGTACGATGCCTCACTTCGTCCGTCTT
TTCTTGGGAAGAAGGACAACTGCCCCAGAACCACTTCTTAGTCATCTTTG
GGATTTTGCGCAGTGCGGGCTATTCTTTTGCTTGACGACAAGCTTTCTAC
CTGTGAACATGGAATCCCAACTCCACATGCACCACTAGAAGTACACCACG
GTATCTTCGTGTGGGAGCCCCTGTACCTCGACCAGAAACCCACTTACACA
GTCTTCTACGAAATGACCCGGAACGGAAAATAAAACGGGAAGTGTTTCAA
AGAGTTGGGACATGTCCAACACAAAGCTTTACTTCGGGAACGCCCTCGCC
GGTAGTCTGGGGGGAGCTCTTGGCTGTCGGAGCCCGATAACGACAAAAGC
TTGGCCAACTGAACGTGCAGCCTATTTCAGATGTAGACTATGCGTACGAC
TCTACCTTAGACCATGACCTACCACAAACCTCTCTCTACCAGGAAGAAGG
CCGGGTCGGTGGTAGGGAGCCGCTGAGCGTCGGCTTGGTGTGTGCCTTCG
AGACGAAGCGGAGCCTGGTCTTGTCGATACCGGCGGGATCAAGGACTCTC
AGGGAGGTCGGCCAGCACATGCACAGCGAGAGGCGGAGCAAGAAGAGCCG
CATTTCCGACGGCGGTGTGTTTAACGACCAGGTGTGGCACGAAGCAACGA
TGATGATGATGATCTGTCGCCATTCGAAAGCGAACGCTCGTTGCGCGGCT
GCTGCACCGAGGGCGGTTGGTGTAGACTACGCCACCACGGTCGCTCGGCG
TTGTGCAGCCTGACGGTTGATGCTCGAAGCTATCGCTTGTGGGTAAGGGG
AAGCTATACGAACAGGGGCAGAAAATTGGCGAGAAGGCGGGCGAAAAGCA
ACGATAAACCATTTCCCGGCCTACACTGACATCGCTTTCCACCACCACTA
AGGGCGCGTGATCGTGTGATCCGCCTGAAGACACCCCCCACCAAGGGACT
CGTCTGCTTACGTCCGTTCATTTCCTTTGGGTGAAGCAGGTGGAGTCACT
GGCCACCCAGGCCTGCCGCGCCGTCGGTTGGCTCCACCACCACGGCCTCA
TATCCGGGGACGTCACCCCTGACAACTTCGTCCTCCTCAGTGGCGGTGGT
GGTGGTACCGGCAGCAGCAACAACAGCGGTGACCGCGACAGCGACAAGGG
CTACAGCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13776:2..1310+

>mRNA_Ecto-sp13_S_contig13776.2964.1 ID=mRNA_Ecto-sp13_S_contig13776.2964.1|Name=mRNA_Ecto-sp13_S_contig13776.2964.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=447bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13776:2..1310+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGTGGTGAAGGTCCTGGCCGACGGGAAGCGCGACGCGACGGGCTGGGA
GGCGTTCATCCGGGAGTGGGGGGTGCTCAAGTACCTCCAGGAAGAAGGCC
GGGTCGGTGGTAGGGAGCCGCTGAGCGTCGGCTTGGTGTGTGCCTTCGAG
ACGAAGCGGAGCCTGGTCTTGTCGATACCGGCGGGATCAAGGACTCTCAG
GGAGGTCGGCCAGCACATGCACAGCGAGAGGCGGAGCAAGAAGAGCCGCA
TTTCCGACGGCGGTGTGTTTAACGACCAGGTGGAGTCACTGGCCACCCAG
GCCTGCCGCGCCGTCGGTTGGCTCCACCACCACGGCCTCATATCCGGGGA
CGTCACCCCTGACAACTTCGTCCTCCTCAGTGGCGGTGGTGGTGGTACCG
GCAGCAGCAACAACAGCGGTGACCGCGACAGCGACAAGGGCTACAGC
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