mRNA_Ecto-sp13_S_contig13772.2962.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13772.2962.1
Unique NamemRNA_Ecto-sp13_S_contig13772.2962.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13772.2962.1 vs. uniprot
Match: A0A6H5L4E4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4E4_9PHAE)

HSP 1 Score: 457 bits (1175), Expect = 2.170e-156
Identity = 336/383 (87.73%), Postives = 344/383 (89.82%), Query Frame = 1 
Query:    1 IQGEAAPTAAMNVIAPTTVAMTTAAXXXXXXXXXXXXXXXXXSAGENVSGDAGERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSESRLGSVAEDCFSSAASFGSVTQTKPVGTGTSTWKGSFVKGSRRCCGCVPLSRGGSSAGARVSSGQAGAPETFDGEGDGGGKPQEPAEKGKSKGGFRPRHRRGHSTGHIAHGTNPSARAARITQPQGWEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGGRETVLSWGRRSGSWGAGGVAAADREFNRILKSGIDVFKHSSTPESTQQWVDVVPKRIKEFLSRSCPLEDENEGLVTLFLDKERENLCWCPPGAAELVPDERYSLSVRSLV 1149
            ++GEAAPTA +NV APTTVA TT A                 SAGENVSGDAGER     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   SESR+G+VAEDCFSS+ASFGSVTQTKPVGTGTSTWKGSFVKGSR CC CVPLSRGGSSA AR+SSGQAGAPETFDGEGDG GKPQEP EKGK K GFRPRHRRGHSTGHIAHGTNPSARAARITQPQGWE  XXXXXXXXXXXXXXXXXXXXXXXXXXXXEGGRETVLSWGRRSGSWGAGGVAAADREFNRILKSGIDVFKHSST ESTQQWVDVVPKRIKEFLSR+CPLEDENEGLVTLFLDKERENLCWCPPGAAELVPDERYSLSVRSLV
Sbjct:   18 LKGEAAPTA-VNVKAPTTVA-TTKAAASVSSRRRTRVEDGGNSAGENVSGDAGERERPQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---SESRVGNVAEDCFSSSASFGSVTQTKPVGTGTSTWKGSFVKGSRCCCSCVPLSRGGSSADARLSSGQAGAPETFDGEGDGWGKPQEPTEKGKGKDGFRPRHRRGHSTGHIAHGTNPSARAARITQPQGWEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGGRETVLSWGRRSGSWGAGGVAAADREFNRILKSGIDVFKHSSTSESTQQWVDVVPKRIKEFLSRTCPLEDENEGLVTLFLDKERENLCWCPPGAAELVPDERYSLSVRSLV 395
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BLAST of mRNA_Ecto-sp13_S_contig13772.2962.1 vs. uniprot
Match: D8LGU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGU4_ECTSI)

HSP 1 Score: 430 bits (1106), Expect = 3.300e-146
Identity = 254/272 (93.38%), Postives = 257/272 (94.49%), Query Frame = 1 
Query:  334 ESRLGSVAEDCFSSAASFGSVTQTKPVGTGTSTWKGSFVKGSRRCCGCVPLSRGGSSAGARVSSGQAGAPETFDGEGDGGGKPQEPAEKGKSKGGFRPRHRRGHSTGHIAHGTNPSARAARITQPQGWEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGGRETVLSWGRRSGSWGAGGVAAADREFNRILKSGIDVFKHSSTPESTQQWVDVVPKRIKEFLSRSCPLEDENEGLVTLFLDKERENLCWCPPGAAELVPDERYSLSVRSLV 1149
            ESR+GS AED FSS+ASFGSVTQTKPVGTGTSTWKGSFVKGSR CC CVPLSR GSSA ARVSSGQAGAPETFDGE DG  KPQEP EKGK KGGFRPRHRRGHSTGHIAHGTNPSARAARITQPQGWE  XXXXXXXXXXXXXXXXXXXXXXXXXXXXEGGRETVLSWGRRSGSWGAGGVAAADREFNRILKSG+DVFKH ST ESTQQWVDVVPKRIKEFLSRSCPLEDENEGLVTLFLDKERENLCWCPPGAAELVPDERYSLSVRSLV
Sbjct:  105 ESRVGSGAEDRFSSSASFGSVTQTKPVGTGTSTWKGSFVKGSRCCCSCVPLSRRGSSADARVSSGQAGAPETFDGESDGWVKPQEPTEKGKGKGGFRPRHRRGHSTGHIAHGTNPSARAARITQPQGWEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGGRETVLSWGRRSGSWGAGGVAAADREFNRILKSGVDVFKHCSTRESTQQWVDVVPKRIKEFLSRSCPLEDENEGLVTLFLDKERENLCWCPPGAAELVPDERYSLSVRSLV 376
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13772.2962.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L4E4_9PHAE2.170e-15687.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGU4_ECTSI3.300e-14693.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13772contigEcto-sp13_S_contig13772:3..3366 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1149
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-28_001220.1
Cds size1119
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13772.2962.1prot_Ecto-sp13_S_contig13772.2962.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13772 3..3336 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462735.2065234-CDS-Ecto-sp13_S_contig13772:2..1151681462735.2065234-CDS-Ecto-sp13_S_contig13772:2..115Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13772 3..115 -
1681462735.2161548-CDS-Ecto-sp13_S_contig13772:340..4361681462735.2161548-CDS-Ecto-sp13_S_contig13772:340..436Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13772 341..436 -
1681462735.2256389-CDS-Ecto-sp13_S_contig13772:1138..14261681462735.2256389-CDS-Ecto-sp13_S_contig13772:1138..1426Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13772 1139..1426 -
1681462735.2344859-CDS-Ecto-sp13_S_contig13772:1573..17721681462735.2344859-CDS-Ecto-sp13_S_contig13772:1573..1772Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13772 1574..1772 -
1681462735.2446444-CDS-Ecto-sp13_S_contig13772:2599..28951681462735.2446444-CDS-Ecto-sp13_S_contig13772:2599..2895Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13772 2600..2895 -
1681462735.253253-CDS-Ecto-sp13_S_contig13772:3209..33361681462735.253253-CDS-Ecto-sp13_S_contig13772:3209..3336Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13772 3210..3336 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462735.266768-UTR-Ecto-sp13_S_contig13772:3336..33661681462735.266768-UTR-Ecto-sp13_S_contig13772:3336..3366Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13772 3337..3366 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13772.2962.1

>prot_Ecto-sp13_S_contig13772.2962.1 ID=prot_Ecto-sp13_S_contig13772.2962.1|Name=mRNA_Ecto-sp13_S_contig13772.2962.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=373bp
MNVIAPTTVAMTTAAAASASSRRRTRGDGGGNSAGENVSGDAGERERPQQ
QQQQQQKEAEGRGAATPTKASAEPPLPPLSMQHEGIAGGNGGGDGDGGGG
SESRLGSVAEDCFSSAASFGSVTQTKPVGTGTSTWKGSFVKGSRRCCGCV
PLSRGGSSAGARVSSGQAGAPETFDGEGDGGGKPQEPAEKGKSKGGFRPR
HRRGHSTGHIAHGTNPSARAARITQPQGWEGGGGGSSATTSTTSSTGSTA
LAVAAASGGGEGGRETVLSWGRRSGSWGAGGVAAADREFNRILKSGIDVF
KHSSTPESTQQWVDVVPKRIKEFLSRSCPLEDENEGLVTLFLDKERENLC
WCPPGAAELVPDERYSLSVRSLV
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mRNA from alignment at Ecto-sp13_S_contig13772:3..3366-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13772.2962.1 ID=mRNA_Ecto-sp13_S_contig13772.2962.1|Name=mRNA_Ecto-sp13_S_contig13772.2962.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3364bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13772:3..3366- (Ectocarpus species13 EcNAP12_S_4_19m)
ATTCAGGGGGAGGCAGCGCCAACGGCGGCGATGAATGTCATCGCTCCCAC
CACCGTTGCAATGACGACGGCAGCAGCAGCATCGGCGTCCAGCCGAAGAA
GGACACGCGGAGACGGCGGCGGCAACAGTGCCGGCGAGAACGTTTCCGGC
GACGCAGGTCAGCGCCAAAGGCGACAACGACGCCTACTGCACGAAAGAGA
TTTGTTGGTTGGGGGGGGGGGGGGGGTGATGAGCGACCGCTACAAAGTGT
AGCGCAACTTTTTGTGTGCCCTGCCGACTTTGACGGCCTCCGCCGCGCGC
CACGACAAGAGGGGGAAGCAATCGAAGGAGAAAGAAAGAGATAGCGAGAT
ATAAGGGTGCGGAGAGAGAGGGCTGCTGCCGCCTTTGCCATCTGAAACGT
GTAGGTAATTTCGCGCGAGACTTTTCAACTCTCTTCCGTCGTCGTTTTTT
GTTGTTTGTTTGGGCTTCTAGGGGAGAGAGAGCGGCCACAGCAGCAGCAG
CAGCAGCAGCAGAAGGAAGCGGAAGGTAGAGGAGCGGCGACACCAACAAA
AGCATCTGCCGAACCACCGCTACCGCCGCTATCGATGCAACACGAAGGCA
TCGCCGGGGGGAATGGCGGCGGCGACGGCGACGGCGGGGGCGGCAGCGAG
AGTCGGTTAGGGAGCGTAGCGGAAGATTGCTTTTCTTCTGCGGCGAGCTT
CGGCAGCGTAACGCAGACCAAACCGGTGGGGACGGGCACCTCCACCTGGA
AGGGATCATTCGTGAAGGTAGGTGTAAAAGAATACAGGACCTGGTAAGGC
AACACAACAAAATGTTGAGCGACGTTACACTCGTGGCAGGCGGGACCCCG
GGTATCCCACGACGTACTCGTTGCCGTGGATGCCGTAGTCGTTAGACCAT
TCCCTTCAAAAGCCGAGACGGAGCACGCCGGATTGTCACCGGACCAGGCG
ATCACATCACCAAGCGCGAAGCGCCGCGATGCATTATTCGGTGAATCGCA
TGGATGGTGCGCTGCATCCTGCGACGTGTGATCGGCAGCTTGTGCTTTCT
TGCATTCGTCGGGGGCGCGCAAACGAACACGCAGCAGAGTGACCATGTAC
AAGAAAGACGGCTGATTGTGCTTATCCGCCGAGGATCAGGTTGCCGTTTA
CGGGTGCACGAATGGGGGGGGGCATGCGCCATGGCTGTACTGCCGTATAG
CATTGTCTACGGGGTTTGTTTTGGGGCAGTCGCGTGGTTCTGGCATTGGT
CTCGTACGGCCGAGGCCGAAGAGCGGATTTTCTGAAGGGGCTGGAAACGC
CCAACAGGCGATGGGGTTACTGCCACTGTTGCTGTTGTTGGCATGGGAGA
GAACCGGTGGTGGCGCGTGAAGGCGCCGCTGTTTCTGCTGTCTGTTTGGG
CAGCGGGCGGACTCACAGCAGTTGCCGCTGCTGACGCTAGCTTTGAGCAG
CCGCATCTACTGCTGTGGCGGAAATTGTGTGCGACTCGGACCGCTGGTTT
TGACGCTGCTTCCTCGGCGTCGTATGGGTGAGCTTGAACGTTGCGCCTTA
CCCTCGCCGCTCTCGCCGCTTCGCTCGCGATGGATTCTCAATAGGGGAGC
CGCCGCTGTTGCGGCTGCGTGCCTCTGTCGCGAGGAGGCAGCAGCGCCGG
CGCGAGGGTAAGCTCTGGACAGGCAGGGGCTCCCGAGACGTTCGACGGCG
AGGGCGACGGCGGGGGAAAGCCACAAGAGCCGGCGGAAAAGGGCAAGAGC
AAGGGCGGCTTCCGTCCGCGTCATCGGAGGGGACACTCGACGGGTACGGG
GACCAGCACTTTTTTATCACACAAAAGCCAGTTCATAACGTAGGTTACAG
GGACGATAAGAACAAAAAGCGCATTTTCCTACAAAAAACAACTCCAGCGG
TCCCTACCTCAATCTCCGTCCGTCGCCGCTTTCTCAACAGGACACATCGC
GCACGGCACAAATCCCTCGGCAAGAGCTGCACGCATCACCCAGCCTCAAG
GCTGGGAGGGCGGCGGCGGCGGCAGCAGTGCCACGACATCTACAACGTCA
TCGACCGGCAGCACCGCTCTGGCCGTGGCGGCGGCAAGCGGCGGCGGCGA
AGGGGGCCGGGAGACGGTGCTGTCGTGGGGGAGGAGGTCGGGTTCTTGGG
GCGCCGGAGGGGTCGCTGCTGCGGACCGGGAGTTCAACCGCATCTTGAAG
TCCGGCATCGATGTGTTCAAGCATAGCTGTAAGTTGTTTGTGTCGTGCTT
GGCACGGCGTGTGTTGGCGTTCAATCGAAGCTGTTGGCGGTATCGTGCTT
GGTAACGTTGGTGTTTTGTGTCGTCGTTGCTGTTGCTGCTGTTCGTGCTG
CTTGTGTGTCCCGATGTCGGGACGATGGAATATTTTGCTGTTGGTTGTGG
TGACTCGCGAGGCTTCTGTAGACTGCCTTGTTTCCCTCTGTTGACGTATC
GACCCTGTCCAGTGTATCGTTTGCACGTGAGCAGCGTCAATTTTAAGCAG
ACAAGTGGAAAGCCGCCGCATATTTTGTTTTGCGCATGGTCATTTGCCCA
ATTCTTGGCGTTGAGCACAAGAACCAAAGGCGGGACCCGGAATGTTTGGT
TGACTCGGGTGGCTTTTTAGTTCCATTTCCCGCCGAACGTATCGAGAACC
ACGCAGGACATTTTTTTCCGGTCCACGAATGGATATGAGGGGTGGGGCTT
ACATGCGATCGTTTCCAGGGCCGAACCGGTTTTCTTGCAGAATTGAGAAC
ATTGTCTACAGTTGTTAAGAGACACCATCGCACATGATGGGTCGATAACA
TTCGTTCCGCGAACATGAAGAGTCAGATCGCCCACCGTGTAGTCACGCAA
GCAACTGTTGCTCACCGCATTCTTTTCATTCCGGCCGTTCTTCGTGCGGG
CACATTTCTCCGACGGTTTGGTTGCGATAGCAACGCCGGAGTCAACCCAG
CAGTGGGTGGACGTGGTGCCCAAACGAATTAAGGAGTTCTTGTCCAGGAG
CTGTCCGCTGGAGGACGAAAATGAAGGTATGTGTTTCTGATGATATCACA
GTTTCGTTCTACGCGTATGATTCATAGCCACAAAGGCAATTTTTTTGTCG
TTTGCTACAACTTTTGGAACGGGAAGGAGTATGAACGCTCTGTTTTTTTC
TAAACCCACCTTTATTAGCTTTTTGCTCCTCTCCGGTCTCGTCGCCGATG
ACCCTTTCTTGCCTTTGTTGCTGTTGCCTGTCGCCTTTTTGCCGTTTGCA
GGCCTGGTGACGCTGTTCCTGGACAAGGAGCGGGAGAACTTGTGCTGGTG
CCCCCCCGGCGCGGCGGAGCTTGTGCCGGATGAGCGCTACTCCTTGAGTG
TCCGCTCCCTCGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13772:3..3366-

>mRNA_Ecto-sp13_S_contig13772.2962.1 ID=mRNA_Ecto-sp13_S_contig13772.2962.1|Name=mRNA_Ecto-sp13_S_contig13772.2962.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1119bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13772:3..3366- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAATGTCATCGCTCCCACCACCGTTGCAATGACGACGGCAGCAGCAGC
ATCGGCGTCCAGCCGAAGAAGGACACGCGGAGACGGCGGCGGCAACAGTG
CCGGCGAGAACGTTTCCGGCGACGCAGGGGAGAGAGAGCGGCCACAGCAG
CAGCAGCAGCAGCAGCAGAAGGAAGCGGAAGGTAGAGGAGCGGCGACACC
AACAAAAGCATCTGCCGAACCACCGCTACCGCCGCTATCGATGCAACACG
AAGGCATCGCCGGGGGGAATGGCGGCGGCGACGGCGACGGCGGGGGCGGC
AGCGAGAGTCGGTTAGGGAGCGTAGCGGAAGATTGCTTTTCTTCTGCGGC
GAGCTTCGGCAGCGTAACGCAGACCAAACCGGTGGGGACGGGCACCTCCA
CCTGGAAGGGATCATTCGTGAAGGGGAGCCGCCGCTGTTGCGGCTGCGTG
CCTCTGTCGCGAGGAGGCAGCAGCGCCGGCGCGAGGGTAAGCTCTGGACA
GGCAGGGGCTCCCGAGACGTTCGACGGCGAGGGCGACGGCGGGGGAAAGC
CACAAGAGCCGGCGGAAAAGGGCAAGAGCAAGGGCGGCTTCCGTCCGCGT
CATCGGAGGGGACACTCGACGGGACACATCGCGCACGGCACAAATCCCTC
GGCAAGAGCTGCACGCATCACCCAGCCTCAAGGCTGGGAGGGCGGCGGCG
GCGGCAGCAGTGCCACGACATCTACAACGTCATCGACCGGCAGCACCGCT
CTGGCCGTGGCGGCGGCAAGCGGCGGCGGCGAAGGGGGCCGGGAGACGGT
GCTGTCGTGGGGGAGGAGGTCGGGTTCTTGGGGCGCCGGAGGGGTCGCTG
CTGCGGACCGGGAGTTCAACCGCATCTTGAAGTCCGGCATCGATGTGTTC
AAGCATAGCTCAACGCCGGAGTCAACCCAGCAGTGGGTGGACGTGGTGCC
CAAACGAATTAAGGAGTTCTTGTCCAGGAGCTGTCCGCTGGAGGACGAAA
ATGAAGGCCTGGTGACGCTGTTCCTGGACAAGGAGCGGGAGAACTTGTGC
TGGTGCCCCCCCGGCGCGGCGGAGCTTGTGCCGGATGAGCGCTACTCCTT
GAGTGTCCGCTCCCTCGTC
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