mRNA_Ecto-sp13_S_contig13770.2961.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13770.2961.1
Unique NamemRNA_Ecto-sp13_S_contig13770.2961.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13770.2961.1 vs. uniprot
Match: A0A6H5JBF4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBF4_9PHAE)

HSP 1 Score: 214 bits (545), Expect = 2.400e-65
Identity = 122/170 (71.76%), Postives = 124/170 (72.94%), Query Frame = 3 
Query:  162 MADMSKARSSSIDLGATVVVKRDGELLGQRGSVVDKKQGWYKVQLPGVDGIKSFRWAEIKEMEAPPPSPPPSANPSPIKPQAPSPSKKISSESTXXXXXXXXXXXDXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTVTMRRRITRGRPSENDAGVTPNSSAAGALDQPDQ 671
            MAD SKARSSSIDLGATVVVKRDGELLGQRGSVVDK QGWYKVQLPGVDGIKSFRWAEIKEMEAPPPSPPPSA PSPIKPQAPSP KK SS ST           D                           EKTVTMRRR+TRGRPSENDAGVTP+SSAAG  DQPDQ
Sbjct:    1 MADKSKARSSSIDLGATVVVKRDGELLGQRGSVVDKNQGWYKVQLPGVDGIKSFRWAEIKEMEAPPPSPPPSAIPSPIKPQAPSPFKKNSSVSTAAAAVVGVAG-DKSSSRGKAAGGFPPRHPSTASAASVADEKTVTMRRRLTRGRPSENDAGVTPSSSAAGTSDQPDQ 169
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BLAST of mRNA_Ecto-sp13_S_contig13770.2961.1 vs. uniprot
Match: D8LJ46_ECTSI (Similar to deoxynucleotidyltransferase, terminal, interacting protein 2, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ46_ECTSI)

HSP 1 Score: 173 bits (439), Expect = 9.820e-47
Identity = 109/172 (63.37%), Postives = 111/172 (64.53%), Query Frame = 3 
Query:  162 MADMSKARSSSIDLGATVVVKRDGELLGQRGSVVDKKQGWYKVQLPGVDGIKSFRWAEIKEMEAPPPSPPPSANPSPIKPQAPSPSKKISSESTXXXXXXXXXXXDXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTVTMRRRITRGRPSENDAGVTPNSSAAGALDQPDQER 677
            M D  KARSSSIDLGATVVVKRDGELLGQRGSVVDKKQGWYKVQLPGVDGIKSFRWAEIKEMEAPPP          IKPQAP           XXXXXXX    D                           EKTVTMRRR+TRG PSENDAGVTP+SS     DQPDQER
Sbjct:    1 MEDKPKARSSSIDLGATVVVKRDGELLGQRGSVVDKKQGWYKVQLPGVDGIKSFRWAEIKEMEAPPPXXXXXXXXXXIKPQAPXXXXXXXXXXXXXXXXXXGVAGDKSSSRGKAAGALPPRHPSTASAASAADEKTVTMRRRLTRGHPSENDAGVTPSSSTPEVSDQPDQER 172
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13770.2961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JBF4_9PHAE2.400e-6571.76Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LJ46_ECTSI9.820e-4763.37Similar to deoxynucleotidyltransferase, terminal, ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13770contigEcto-sp13_S_contig13770:1026..4551 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score177.2
Seed ortholog evalue1.1e-41
Seed eggNOG ortholog2880.D8LJ46
Preferred nameDNTTIP2
Model size860
KEGG rclassRC00055,RC00061,RC00064,RC00090,RC00523
KEGG koko:K01867,ko:K03942,ko:K11205,ko:K20294
KEGG TC3.D.1.6
KEGG ReactionR00894,R03664,R10993,R11945
KEGG Pathwayko00190,ko00270,ko00480,ko00970,ko01100,ko04216,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map00270,map00480,map00970,map01100,map04216,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00118,M00143,M00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0031974,GO:0031981,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363
Exons3
EggNOG free text desc.transcription, DNA-templated
EggNOG OGsKOG3100@1,KOG3100@2759
EC1.6.5.3,1.6.99.3,6.1.1.2
Cds size834
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462735.1392171-UTR-Ecto-sp13_S_contig13770:1025..10511681462735.1392171-UTR-Ecto-sp13_S_contig13770:1025..1051Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13770 1026..1051 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462735.152596-CDS-Ecto-sp13_S_contig13770:1051..12771681462735.152596-CDS-Ecto-sp13_S_contig13770:1051..1277Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13770 1052..1277 +
1681462735.1620667-CDS-Ecto-sp13_S_contig13770:2861..31781681462735.1620667-CDS-Ecto-sp13_S_contig13770:2861..3178Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13770 2862..3178 +
1681462735.1743317-CDS-Ecto-sp13_S_contig13770:4260..45511681462735.1743317-CDS-Ecto-sp13_S_contig13770:4260..4551Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13770 4261..4551 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13770.2961.1prot_Ecto-sp13_S_contig13770.2961.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13770 1052..4551 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13770.2961.1

>prot_Ecto-sp13_S_contig13770.2961.1 ID=prot_Ecto-sp13_S_contig13770.2961.1|Name=mRNA_Ecto-sp13_S_contig13770.2961.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=278bp
MAMYPIAPHLRTIYEDRGVFTTTHHIPHTRHVSTCWLCLYGRRIAMADMS
KARSSSIDLGATVVVKRDGELLGQRGSVVDKKQGWYKVQLPGVDGIKSFR
WAEIKEMEAPPPSPPPSANPSPIKPQAPSPSKKISSESTAAAAAVVGVAG
DKSSSRGKAAGGLPPRHPSAASAASAADEKTVTMRRRITRGRPSENDAGV
TPNSSAAGALDQPDQEREDEEEEEEKARGGSAGRTADVYDDEETESEANR
EVDEDETDLDDVEEGGGGGADTDVDEGH
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mRNA from alignment at Ecto-sp13_S_contig13770:1026..4551+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13770.2961.1 ID=mRNA_Ecto-sp13_S_contig13770.2961.1|Name=mRNA_Ecto-sp13_S_contig13770.2961.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3526bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13770:1026..4551+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACGGCGCTGTGGGCGGAGCGGACTGATGGCGATGTATCCAATTGCGCCG
CATCTACGAACAATCTACGAAGACCGCGGTGTGTTCACCACCACACACCA
CATACCGCACACAAGGCACGTGAGCACCTGCTGGCTTTGCTTGTACGGCC
GCCGTATCGCCATGGCAGACATGTCTAAAGCGCGTTCGTCGAGTATTGAC
CTGGGAGCCACTGTCGTGGTGAAGAGAGATGGAGAACTGCTCGGACAACG
AGGTGAAAAGGGGCAAGGGCAGACAGCTCTGAAGCTGATATATTCGGCCT
TCCCAGACAGACACAGACGCAGCGTAGTTGTTCAGCAGTACCTGCACGTG
CAGCACGTGAAGTGGAGGTGTGCTTCTTATCGCCGAACGAGATCGATATG
ATGCTTCTCACGACTTGTGTGTCACTGCTGTTGTTTTGTGTTGGCGATGC
TGTCTTTGTCTCCCCGACGCTCCCCACTTCTGTTGCATGTAGTTGATGTT
TGCTGCAGGTCATGTTGCTGAGAGCAGGAACGTATGCTGGCTGCTCGATA
GAGGGGATGCTCTCGAGAGGGAGGCCAGTTGTCGCCTGGTCTAAGCTACA
CGCGAGGCGCTCATCGCGAAGAAACAGCCCCAATCTAAACCAAAGAATAG
TTAAGGGCATACATCTCTTCGCTCCCTTCACGGTGATTGTCTCCATTGAC
ACCAAGTGTTTGCCGGTCCCACGTTTGCCCGACACAGCTCGGTTGATCCA
CCACCTAGAGTACCAAGGGGGAGTCGGAAAGCTCTCGATACTTCCGTTAT
GACGCCGGCCTTTTCGGCATGGGGTAAGTATTTTCCTGTGTAGCAATCGA
GCCTTGACACTTGGTCTACAACACCGACGTCAAGCACCGCGTGTGTGCAC
GGGAGGCGGGAGTGCGCACCGAAAACAGCAGCTGACCCCCCCCCCGCCCC
CCCGAATATGACAGTCTCACCTTTCCCCACGCCCAGCGCATAGTATTACA
CCATCGTTGACAAACGATGCTAATCGCCACACCCATGGTATCAACGTGTA
TGTATCGCGAGGACGCTGACGCCCCTCGACCTCCCCGAAACAGACCATAG
GTAAAGTAAACCCTGGAGGAGTAACCAGAAACGGGTAAACCCGGGTGGAT
TATCACCATTTCAGCGTACACTTGGAACTCAACACGACACCAATCTCCGA
CAGCATCCGCCGTAGATCGCGGCGAAACAAACCGCTGTGTGTCTTGCGTC
CTGTGTTTCGGAAGAATGATGCACAAGACAGGTCTTGCCCGTTTTTTTCT
CTCTCTCGGCCTGCCTCTCTCTCTGTGCCTCTCTCTCTCTGCTTTTACTG
ATCAGCACCACACCGAACGAACTCGCGCGTCAAGCGAGTCCTTCCGTCTG
TTGAGAGGGGCCGGTATCCTATGGAGGCGGTGCCCATGAACGATGAACGA
GCGAGCGTTATTGGTGGTTTGGTTGTTATGTATGTGCGGTACACGGTATG
TGCGGTACGCGTTTTTTTCTGCGGGTTTGATGCTAGAGCGTCGGGCGCCG
GGATTACGTGATCATTTCTGGGTACGAAATCGACCTCTTCCGGGTACACC
AGTAACCAATATCGGTCACAACAGAGCGTCCTAATTCCGGCGGTATTTGT
ACCCGATGGAAATTTCTTCTGAAATGGGTACAATGGTTTTTCGGCCAATC
AGCTGACAGCCTTTGATTTCTAAGTTTACCCTAAGTGGTGACAAAGTACC
TGGGTATACTCGTTTCTGGTTATTGGTCTAAACCCTGTCGCGAATATTGT
TGTTTTTTGCGTGCCCCCCTGATTCCTGCCAACCAGGTTCTGTGGTGGAC
AAGAAGCAGGGGTGGTACAAGGTCCAGCTCCCCGGGGTGGACGGCATCAA
GAGCTTCCGATGGGCGGAAATAAAAGAGATGGAAGCCCCCCCGCCTTCGC
CTCCCCCCTCGGCAAATCCAAGCCCAATCAAGCCTCAGGCACCATCCCCG
TCCAAGAAGATTTCCTCCGAATCCACGGCTGCGGCGGCGGCGGTAGTAGG
TGTTGCGGGGGATAAGTCTTCGTCGAGAGGGAAAGCGGCGGGGGGGTTGC
CGCCGAGACATCCGTCGGCCGCCTCGGCTGCTTCCGCCGCGGACGAGAAA
ACGGTGAGCGAGAACAACCCAGCAGCAGGCTTTGTACCGGTAGGTCTTCC
TCTCAACCCTGACTAGCTCTATCGCGCCTCGAGTAAATCCGGCAGGAGCG
AACGAGCCTCGTGTTAGATACCCACCTACTCCTGCGATTTCTGATGCTTC
CAGGGTAATATTAGTCGAGGCAGGTATGTACGACTTGCGCCTGTTTCAGG
TGAAGGTTTTGAGTTTTTCCCGCTCTGGACTTGCCGCTGCTCTCATGTCC
ATCCCATTAAATCTCGCATCCGGCCTTGGCTGTGAGCGCACCTGTGTCTG
GGGTGAAGGTGGCAACAAGATGGCATCCATTCGGTGCACGTTCGGTGGTG
GCTTTAGAGTTTCCGAAATAGACAACACCACAACACCACACTGCTGTTTG
TATGTACAGAAACGAGATGTCCTTTCTTGTGCCGGACACGAAATTACGTA
CAACTGCATGGCTCCTGTAGGTACACCCATGCAGTGGTTGTTGTGTCCAC
GCGTTGGGATGTATGAGCGGCTACCGAAAAATTAGCTTGTGATTCCTGGT
TGAATGTTGCTCCTGTGCGCTGCTGTCCACCTGTGTGCGTGTGATTACCA
ACTGAACAATGAAATGGTATGTCTCAAAGTAGGACCCAAAACACGAACAC
GCCTCATTATTGTCAACGGGCTCGTGGGCGGGGAGGAGGTTGAACGACAG
CGCTCAGGGTCTGGATTCGAAGGGTGTGCGCAAGGAGAGACAGAACCACC
GCGTGTAGTATTCCTGCTGTGCATGTGTGTGTGTGGTTTGCGATGCCCTC
GACCTGCGATAGATGACAACTTGGAGACGGGGCTTGAATTGTCTTTCTCC
TCACCCCTGCCTCCTTCCTCCAAGCTTGTCTACAAAACATGCTACGTGGC
TTGCTCTCTCACCGCCCATTCAATGCCTCGTTTCCCGCGGTTGTCCTTTG
CACAGCACGTGCGCACACACTCCCCGTCCACAAGCATTTTTTCTGTCTCT
GTGCCGCCAGCCCGTCTTCCTACCTGCACACGACGTTCTGTCTCACCTGC
GTGCCGTTTTCACCCCTCCCCCTCCTCTGTACAAGGTGACCATGCGGCGT
CGAATAACAAGGGGGCGTCCCTCCGAGAATGATGCCGGTGTCACCCCCAA
TTCCTCGGCGGCGGGAGCCTTAGACCAACCGGACCAGGAGAGGGAAGATG
AGGAGGAGGAGGAGGAGAAGGCACGAGGGGGGAGCGCAGGGAGAACGGCC
GACGTTTATGACGACGAAGAGACGGAGTCTGAAGCGAACCGTGAAGTAGA
CGAGGACGAGACTGATCTGGACGACGTCGAAGAAGGGGGAGGGGGAGGGG
CTGACACAGATGTCGACGAGGGGCAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13770:1026..4551+

>mRNA_Ecto-sp13_S_contig13770.2961.1 ID=mRNA_Ecto-sp13_S_contig13770.2961.1|Name=mRNA_Ecto-sp13_S_contig13770.2961.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=834bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13770:1026..4551+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGATGTATCCAATTGCGCCGCATCTACGAACAATCTACGAAGACCG
CGGTGTGTTCACCACCACACACCACATACCGCACACAAGGCACGTGAGCA
CCTGCTGGCTTTGCTTGTACGGCCGCCGTATCGCCATGGCAGACATGTCT
AAAGCGCGTTCGTCGAGTATTGACCTGGGAGCCACTGTCGTGGTGAAGAG
AGATGGAGAACTGCTCGGACAACGAGGTTCTGTGGTGGACAAGAAGCAGG
GGTGGTACAAGGTCCAGCTCCCCGGGGTGGACGGCATCAAGAGCTTCCGA
TGGGCGGAAATAAAAGAGATGGAAGCCCCCCCGCCTTCGCCTCCCCCCTC
GGCAAATCCAAGCCCAATCAAGCCTCAGGCACCATCCCCGTCCAAGAAGA
TTTCCTCCGAATCCACGGCTGCGGCGGCGGCGGTAGTAGGTGTTGCGGGG
GATAAGTCTTCGTCGAGAGGGAAAGCGGCGGGGGGGTTGCCGCCGAGACA
TCCGTCGGCCGCCTCGGCTGCTTCCGCCGCGGACGAGAAAACGGTGACCA
TGCGGCGTCGAATAACAAGGGGGCGTCCCTCCGAGAATGATGCCGGTGTC
ACCCCCAATTCCTCGGCGGCGGGAGCCTTAGACCAACCGGACCAGGAGAG
GGAAGATGAGGAGGAGGAGGAGGAGAAGGCACGAGGGGGGAGCGCAGGGA
GAACGGCCGACGTTTATGACGACGAAGAGACGGAGTCTGAAGCGAACCGT
GAAGTAGACGAGGACGAGACTGATCTGGACGACGTCGAAGAAGGGGGAGG
GGGAGGGGCTGACACAGATGTCGACGAGGGGCAC
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