mRNA_Ecto-sp13_S_contig13756.2953.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig13756.2953.1
Unique Name	mRNA_Ecto-sp13_S_contig13756.2953.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig13756.2953.1 vs. uniprot
Match: A0A6H5KQD5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD5_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 4.600e-61
Identity = 117/177 (66.10%), Postives = 133/177 (75.14%), Query Frame = -3

Query:    7 SPSPKVSPSPTAAL---QAAPSFEVTLDQPRPAAAPPSLYQFRPADLAFLCRPLDTPAADILFYQEDEQDAAWILSAAQGTASAAFPGSRASFACVFHDRFLRTLPTSRRADFFRLLSALRRATFKQGPQGTSLVLGPDHIPFTRAVGKDSGMQQQASPRRGDKNYGEQAAPAKVSR 528
            SPSP VSPS  AA    + A SFEVTLD PR AA  P  YQF  AD+AFL RPLDTPAADI F+QEDE +A WILSAAQGTA  +FP SRASFACVF+D +L TLP  RRAD  RLL+ALRRATFK+  QG+SLV GP+  PF R++GKDS +QQQ +PR  DK+YG QAA  K SR
Sbjct:  224 SPSPDVSPSQKAASTHPRPATSFEVTLDNPRSAATSPLYYQFLAADVAFLGRPLDTPAADIFFHQEDEHEARWILSAAQGTAGPSFPDSRASFACVFNDWYLGTLPPPRRADLIRLLTALRRATFKEDQQGSSLVTGPNQNPFARSIGKDSRLQQQVTPRHNDKHYGNQAASTKASR 400

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BLAST of mRNA_Ecto-sp13_S_contig13756.2953.1 vs. uniprot
Match: A0A6H5L6J6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6J6_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 5.100e-23
Identity = 61/90 (67.78%), Postives = 66/90 (73.33%), Query Frame = -3

Query:  268 SPSPKVSPSPTAAL---QAAPSFEVTLDQPRPAAAPPSLYQFRPADLAFLCRPLDTPAADILFYQEDEQDAAWILSAAQGTASAAFPGSR 528
            SPSP VSPS  AA    + A SFEVTLD PR AA  P  YQF  AD+AFL RPLDTP+ADI F+QEDE +A WILSAAQGTA  AFP SR
Sbjct:  225 SPSPDVSPSQKAASTHPRPATSFEVTLDNPRSAATSPLYYQFLAADVAFLGRPLDTPSADIFFHQEDEHEARWILSAAQGTAGTAFPDSR 314

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BLAST of mRNA_Ecto-sp13_S_contig13756.2953.1 vs. uniprot
Match: A0A6H5KA88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA88_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.680e-19
Identity = 63/110 (57.27%), Postives = 68/110 (61.82%), Query Frame = -1

Query:  207 RPAPRCRRLRPQRYRPP---QALRSPSTNLGQLQRPPLCTNSVPQIWPSSAAPWIRPRRTSSSTRRTNKTLHGSSPRHKAPQVPPSRAPGHPLLASSMIGSCERSPPPAV 527
            RPAP CRRLR Q  R     +ALRSPST  GQ   P   TNS+    P S AP IR R+TSS T+RTN  L G   RH+AP V PSR PG P  ASSMIG  E SPPP V
Sbjct:  222 RPAPTCRRLRRQHRRIHDLLRALRSPSTTHGQQPHPRSTTNSLLPTLPFSVAPSIRQRQTSSFTKRTNTRLAGFYRRHRAPPVLPSRTPGRPSRASSMIGIWEHSPPPPV 331

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BLAST of mRNA_Ecto-sp13_S_contig13756.2953.1 vs. uniprot
Match: A0A6H5KC07_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC07_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 5.410e-18
Identity = 65/173 (37.57%), Postives = 86/173 (49.71%), Query Frame = -3

Query:   22 AAPSFEVTLDQPRPA------AAPPSLYQFRPADLAFLCRPLDTPAADILFYQEDEQDAAWILSAAQGTASAAFPGSRA-SFACVFHDRFLRTLPTSRRADFFRLLSALRRATFKQGPQGTSLVL--GPDHIPFTRAVGKDSGMQQQASPR----------RGDKNYGEQAAP 483
            A P F VTL  P  A      AA  ++Y F   D  FL RPL+ PA D+ F+ ED+  A +  +  +    A FP S   +F  ++H  ++  LP S R   F+LL ALRRATF +GPQGTS+V   G   +P  RA   +       +PR           GDK+Y   AAP
Sbjct:  124 ATPEFSVTLGLPAGAEDGASFAAATTVYDFHVGDTVFLSRPLEMPAEDVTFHDEDKSAALFAWAGIKQLVRAQFPPSHTVAFGHIYHTPYIAKLPPSSRQSVFQLLFALRRATFNKGPQGTSVVTQDGGLQLPLARAASNNDFKHDLQAPRWASSRPAHGSGGDKDYSWSAAP 296

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BLAST of mRNA_Ecto-sp13_S_contig13756.2953.1 vs. uniprot
Match: A0A6H5K020_9PHAE (NADAR domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K020_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.920e-17
Identity = 65/177 (36.72%), Postives = 88/177 (49.72%), Query Frame = -3

Query:   10 AAPSFEVTLDQPRPA------AAPPSLYQFRPADLAFLCRPLDTPAADILFYQEDEQDAAWILSAAQGTASAAFPGSRA-SFACVFHDRFLRTLPTSRRADFFRLLSALRRATFKQGPQGTSLVL--GPDHIPFTRAVGKDSGMQQQASPRR----------GDKNYGEQAAPAKVS 483
            A P F VTL  P  A      AA  ++Y+F   D AFL RPL+ PA  + F+ ED+  A +  +  +    A FP     +F  ++H  +L  LP S R   F+LL ALRRATF +GPQGTS+V   G   +P  RA   +       +PR+          GDK++   AAP   S
Sbjct:  161 ATPEFSVTLGLPAGAEDGASFAAATTVYEFHVGDTAFLSRPLEMPAEGVTFHNEDKLAALFAWAGIKQLVRAQFPPPHTVAFGHIYHTPYLAKLPPSSRQSVFQLLFALRRATFHEGPQGTSVVTQEGGLQLPLARAASTNDFKHDLQAPRQASSRPTHGSGGDKDFSRSAAPVSKS 337

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BLAST of mRNA_Ecto-sp13_S_contig13756.2953.1 vs. uniprot
Match: A0A6H5KIU6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIU6_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.090e-16
Identity = 64/177 (36.16%), Postives = 87/177 (49.15%), Query Frame = -3

Query:   10 AAPSFEVTLDQPRPA------AAPPSLYQFRPADLAFLCRPLDTPAADILFYQEDEQDAAWILSAAQGTASAAFPGSRA-SFACVFHDRFLRTLPTSRRADFFRLLSALRRATFKQGPQGTSLVL--GPDHIPFTRAVGKDSGMQQQASPRRG----------DKNYGEQAAPAKVS 483
            A P F VTL  P  A      AA  ++Y+F   D AFL RPL+ PA  + F+ ED+  A +  +  +    A FP     +F  ++H  +L  LP S R   F+LL ALRRATF +GPQGTS+V   G   +P  RA   +       +PR+           DK++   AAP   S
Sbjct:  331 ATPEFSVTLGLPAGAEDGASFAAATTVYEFHVGDTAFLSRPLEMPAEGVTFHDEDKLAALFAWAGIKQLVRAQFPPPHTVAFGHIYHTPYLAKLPPSSRQSVFQLLFALRRATFPEGPQGTSVVTQEGGLQLPLARAASTNDFKHDLQAPRQASSRPAHGSGEDKDFSRSAAPVSKS 507

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BLAST of mRNA_Ecto-sp13_S_contig13756.2953.1 vs. uniprot
Match: A0A6H5KH34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH34_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.110e-16
Identity = 64/177 (36.16%), Postives = 87/177 (49.15%), Query Frame = -3

Query:   10 AAPSFEVTLDQPRPA------AAPPSLYQFRPADLAFLCRPLDTPAADILFYQEDEQDAAWILSAAQGTASAAFPGSRA-SFACVFHDRFLRTLPTSRRADFFRLLSALRRATFKQGPQGTSLVL--GPDHIPFTRAVGKDSGMQQQASPRRG----------DKNYGEQAAPAKVS 483
            A P F VTL  P  A      AA  ++Y+F   D AFL RPL+ PA  + F+ ED+  A +  +  +    A FP     +F  ++H  +L  LP S R   F+LL ALRRATF +GPQGTS+V   G   +P  RA   +       +PR+           DK++   AAP   S
Sbjct:  253 ATPEFSVTLGLPAGAEDGASFAAATTVYEFHVGDTAFLSRPLEMPAEGVTFHDEDKLAALFAWAGIKQLVRAQFPPPHTVAFGHIYHTPYLAKLPPSSRQSVFQLLFALRRATFHEGPQGTSVVTQEGGLQLPLARAASTNDFKHDLQAPRQASSRPAHGSGEDKDFSRSAAPVSKS 429

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BLAST of mRNA_Ecto-sp13_S_contig13756.2953.1 vs. uniprot
Match: A0A6H5JCR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCR9_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 5.020e-16
Identity = 66/173 (38.15%), Postives = 85/173 (49.13%), Query Frame = -3

Query:   10 FEVTLDQPRPA------AAPPSLYQFRPADLAFLCRPLDTPAADILFYQEDEQDAAWILSAAQGTASAAFPGSRA-SFACVFHDRFLRTLPTSRRADFFRLLSALRRATFKQGPQGTSLVL--GPDHIPFTRAVGK-----DSGMQQQASPRR-----GDKNYGEQAAPAKVS 471
            F VTL  P  A      AA  ++Y+F   D AFL RPL+ PA D+ F  ED+  A +  +  +    A FP     +F  + H  ++  LP S R   F+LL ALRRATF +GPQG S+V   G   +P  RA        D    +QASPR      GD +Y   AAP   S
Sbjct:  274 FSVTLGLPAGAEGGASFAAAITVYEFHVGDTAFLSRPLELPAEDVTFQDEDKSAARYTWAGIKQLVRAQFPQPHTVAFGHIHHTPYIAKLPPSSRQSMFQLLFALRRATFNRGPQGMSVVTQDGGLQLPLARAASNNDFKHDLQAPRQASPRPAHGSGGDTDYSWSAAPVSKS 446

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BLAST of mRNA_Ecto-sp13_S_contig13756.2953.1 vs. uniprot
Match: A0A6H5KRJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRJ8_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 5.680e-16
Identity = 58/151 (38.41%), Postives = 78/151 (51.66%), Query Frame = -3

Query:   58 AAPSFEVTLDQPRPA------AAPPSLYQFRPADLAFLCRPLDTPAADILFYQEDEQDAAWILSAAQGTASAAFPGSRA-SFACVFHDRFLRTLPTSRRADFFRLLSALRRATFKQGPQGTSLVL--GPDHIPFTRAVGKDSGMQQQASPR 483
            A P F VTL  P  A      AA  ++Y+F   D AFL RPL+ PA  + F+ ED+  A +  +  +    A FP     +F  ++H  +L  LP S R   F+LL ALRRATF +GPQGTS+V   G   +P  RA   +       +PR
Sbjct:  445 ATPEFSVTLGLPAGAEDGASFAAATTVYEFHVGDTAFLSRPLEMPAEGVTFHDEDKLAALFAWAGIKQLVRAQFPPPHTVAFGHIYHTPYLAKLPPSSRQSVFQLLFALRRATFHEGPQGTSVVTQEGGLQLPLARAASTNDFKHDLQAPR 595

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BLAST of mRNA_Ecto-sp13_S_contig13756.2953.1 vs. uniprot
Match: A0A6H5JWW7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW7_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 6.920e-16
Identity = 63/177 (35.59%), Postives = 87/177 (49.15%), Query Frame = -3

Query:   10 AAPSFEVTLDQPRPA------AAPPSLYQFRPADLAFLCRPLDTPAADILFYQEDEQDAAWILSAAQGTASAAFPGSRA-SFACVFHDRFLRTLPTSRRADFFRLLSALRRATFKQGPQGTSLVL--GPDHIPFTRAVGKDSGMQQQASPRRG----------DKNYGEQAAPAKVS 483
            A P F VTL  P  A      AA  ++Y F   D AFL RPL+ PA  + F+ ED+  A +  +  +    A FP     +F  ++H  +L  LP S R   F+LL ALRRATF +GPQGTS+V   G   +P  RA   +       +PR+           +K++ + AAP   S
Sbjct:   10 ATPEFSVTLGLPAGAEDGASFAAATTVYVFHVGDTAFLSRPLEMPAQGVTFHDEDKLAALFAWAGIKQLVRAQFPPPHTVAFGHIYHTPYLAKLPPSSRQSVFQLLFALRRATFHEGPQGTSVVTQEGGLQLPLARAASTNDFKHDLPAPRQASSRLAHGSGENKDFSKSAAPVSKS 186

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig13756.2953.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig13756.2953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21


Match Name	E-value	Identity	Description
A0A6H5KQD5_9PHAE	4.600e-61	66.10	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L6J6_9PHAE	5.100e-23	67.78	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KA88_9PHAE	1.680e-19	57.27	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KC07_9PHAE	5.410e-18	37.57	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5K020_9PHAE	1.920e-17	36.72	NADAR domain-containing protein (Fragment) n=1 Tax...	[more]
A0A6H5KIU6_9PHAE	1.090e-16	36.16	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KH34_9PHAE	1.110e-16	36.16	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JCR9_9PHAE	5.020e-16	38.15	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KRJ8_9PHAE	5.680e-16	38.41	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JWW7_9PHAE	6.920e-16	35.59	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig13756	contig	Ecto-sp13_S_contig13756:1499..2034 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	0
Model size	536
Hectar predicted targeting category	signal peptide
Exons	1
Cds size	489

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462734.3132975-CDS-Ecto-sp13_S_contig13756:1498..1987	1681462734.3132975-CDS-Ecto-sp13_S_contig13756:1498..1987	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig13756 1499..1987 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462734.3221793-UTR-Ecto-sp13_S_contig13756:1987..2034	1681462734.3221793-UTR-Ecto-sp13_S_contig13756:1987..2034	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig13756 1988..2034 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig13756.2953.1	prot_Ecto-sp13_S_contig13756.2953.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig13756 1499..1987 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig13756:1499..2034+
coding sequence from alignment at Ecto-sp13_S_contig13756:1499..2034+

protein sequence of mRNA_Ecto-sp13_S_contig13756.2953.1

>prot_Ecto-sp13_S_contig13756.2953.1 ID=prot_Ecto-sp13_S_contig13756.2953.1|Name=mRNA_Ecto-sp13_S_contig13756.2953.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=163bp
ALPRNLGRRRLFAVVLVPAPGRGLLLHARVLPDGPGKRYVVGPKNERSAL
WTLLERGTAKCRQKAKKIGTAGGGERSQEPIMEDASKGCPGAREGGTCGA
LCRGEDPCSVLFVLLVEEDVRRGRIQGAAEEGQICGTELVQRGGRCSWPR
LVEGDLKAWGGL*

mRNA from alignment at Ecto-sp13_S_contig13756:1499..2034+

Legend: CDSpolypeptideUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig13756.2953.1 ID=mRNA_Ecto-sp13_S_contig13756.2953.1|Name=mRNA_Ecto-sp13_S_contig13756.2953.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=536bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13756:1499..2034+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTTTGCCGCGAAACCTTGGCCGGCGCCGCTTGTTCGCCGTAGTTCTTGT
CCCCGCGCCGGGGCGAGGCTTGCTGCTGCATGCCCGAGTCCTTCCCGACG
GCCCTGGTAAACGGTATGTGGTCGGGCCCAAGAACGAGAGAAGTGCCCTG
TGGACCCTGCTTGAACGTGGCACGGCGAAGTGCAGACAAAAGGCGAAAAA
AATCGGCACGGCGGGAGGTGGGGAGCGTTCGCAGGAACCGATCATGGAAG
ACGCAAGCAAAGGATGCCCTGGAGCCCGGGAAGGCGGCACTTGCGGTGCC
TTGTGCCGCGGAGAGGATCCATGCAGCGTCTTGTTCGTCCTCCTGGTAGA
AGAGGATGTCCGCCGCGGGCGTATCCAGGGGGCGGCAGAGGAAGGCCAGA
TCTGCGGGACGGAATTGGTACAAAGAGGGGGGCGCTGCAGCTGGCCGAGG
TTGGTCGAGGGTGACCTCAAAGCTTGGGGCGGCCTGTAGCGCTGCGGTCG
GAGACGGCGACACCTTGGGGCTGGGCGACGAACGTG

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13756:1499..2034+

>mRNA_Ecto-sp13_S_contig13756.2953.1 ID=mRNA_Ecto-sp13_S_contig13756.2953.1|Name=mRNA_Ecto-sp13_S_contig13756.2953.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=489bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13756:1499..2034+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTTTGCCGCGAAACCTTGGCCGGCGCCGCTTGTTCGCCGTAGTTCTTGT
CCCCGCGCCGGGGCGAGGCTTGCTGCTGCATGCCCGAGTCCTTCCCGACG
GCCCTGGTAAACGGTATGTGGTCGGGCCCAAGAACGAGAGAAGTGCCCTG
TGGACCCTGCTTGAACGTGGCACGGCGAAGTGCAGACAAAAGGCGAAAAA
AATCGGCACGGCGGGAGGTGGGGAGCGTTCGCAGGAACCGATCATGGAAG
ACGCAAGCAAAGGATGCCCTGGAGCCCGGGAAGGCGGCACTTGCGGTGCC
TTGTGCCGCGGAGAGGATCCATGCAGCGTCTTGTTCGTCCTCCTGGTAGA
AGAGGATGTCCGCCGCGGGCGTATCCAGGGGGCGGCAGAGGAAGGCCAGA
TCTGCGGGACGGAATTGGTACAAAGAGGGGGGCGCTGCAGCTGGCCGAGG
TTGGTCGAGGGTGACCTCAAAGCTTGGGGCGGCCTGTAG