mRNA_Ecto-sp13_S_contig13752.2948.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13752.2948.1
Unique NamemRNA_Ecto-sp13_S_contig13752.2948.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13752.2948.1 vs. uniprot
Match: D7FRF7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRF7_ECTSI)

HSP 1 Score: 264 bits (674), Expect = 3.040e-84
Identity = 162/202 (80.20%), Postives = 163/202 (80.69%), Query Frame = 1 
Query:    1 MSARRSPRLSPGKATTAAEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKPDKEEENGPSAYELQRLAKMKENAMMMASLGLGGAKDGMRKAVNSDAAQRAKARGLGPRPNKVYPARSRESARVRGKTPEGLPMEDPEEAFNRRRQGFDAQGTAAAXXXXXXXPRSPRIEGDVSMEATNGTLDGTVRLRQV 606
            MSARRSPRLSPGKATTA EP                           XXXXX       KKPDKEEENGPSAYELQRLAKMKENAMMMASLGLGGAKD MRKAVNSDAAQRAKARGLGPRPNKVYPARSRESARVRGKTPEGLPMEDPEEAFNRRRQGF AQGTAAAXXXXXX PRSPRIEGDVSMEATN TLDGTVRLRQ+
Sbjct:    1 MSARRSPRLSPGKATTAIEPVAGGGGRGARGPPNAKRLRRATAPEAAXXXXXRAASQEGKKPDKEEENGPSAYELQRLAKMKENAMMMASLGLGGAKDNMRKAVNSDAAQRAKARGLGPRPNKVYPARSRESARVRGKTPEGLPMEDPEEAFNRRRQGFGAQGTAAAXXXXXX-PRSPRIEGDVSMEATNSTLDGTVRLRQM 201
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13752.2948.1 vs. uniprot
Match: A0A6H5K3Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Y8_9PHAE)

HSP 1 Score: 242 bits (617), Expect = 1.050e-76
Identity = 176/203 (86.70%), Postives = 176/203 (86.70%), Query Frame = 1 
Query:    1 MSARRSPRLSPGKATTAAEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKPDKEEENGPSAYELQRLAKMKENAMMMASLGLGGAKDGMRKAVNSDAAQRAKARGLGPRPNKVYPARSRESARVRGKTPEGLPMEDPEEAFNRRRQGFDAQGTAAAXXXXXXX--PRSPRIEGDVSMEATNGTLDGTVRLRQ 603
            MSARRSPRLSPGK  TA EP          XXXXXXXXXXXXXXXXXXXXXXXXXXXXX       ENGPSAYELQRLAKMKENAMMMASLGLGGAKD MRKAVNSDAAQRAKARGLGPRPNKVYPARSRESARVRGKTPEGLPMEDPEEAFNRRRQGFD QGT AA XXXXXX  PRSPRIEGDVSME TNGTLDGTVRLRQ
Sbjct:    1 MSARRSPRLSPGKVMTATEPVAGGGGHGARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENGPSAYELQRLAKMKENAMMMASLGLGGAKDSMRKAVNSDAAQRAKARGLGPRPNKVYPARSRESARVRGKTPEGLPMEDPEEAFNRRRQGFDGQGTTAAAXXXXXXXSPRSPRIEGDVSMEETNGTLDGTVRLRQ 203
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13752.2948.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FRF7_ECTSI3.040e-8480.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3Y8_9PHAE1.050e-7686.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13752contigEcto-sp13_S_contig13752:2854..4433 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score268.1
Seed ortholog evalue3.4e-69
Seed eggNOG ortholog2880.D7FRF7
Model size609
KEGG rclassRC00508
KEGG koko:K08678
KEGG ReactionR01384
KEGG Pathwayko00520,ko01100,map00520,map01100
KEGG ModuleM00361
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0008150,GO:0031974,GO:0031981,GO:0034399,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0048583,GO:0050789,GO:0050794,GO:0051726,GO:0065007,GO:0070013,GO:0080134,GO:0080135,GO:0097159,GO:1901363,GO:1901976,GO:2000001,GO:2001020
Exons2
EggNOG free text desc.cellular response to DNA damage stimulus
EggNOG OGsKOG4328@1,KOG4328@2759
EC4.1.1.35
Cds size609
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462734.0345666-CDS-Ecto-sp13_S_contig13752:2853..32421681462734.0345666-CDS-Ecto-sp13_S_contig13752:2853..3242Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13752 2854..3242 +
1681462734.046994-CDS-Ecto-sp13_S_contig13752:4213..44331681462734.046994-CDS-Ecto-sp13_S_contig13752:4213..4433Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13752 4214..4433 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13752.2948.1prot_Ecto-sp13_S_contig13752.2948.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13752 2854..4433 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13752.2948.1

>prot_Ecto-sp13_S_contig13752.2948.1 ID=prot_Ecto-sp13_S_contig13752.2948.1|Name=mRNA_Ecto-sp13_S_contig13752.2948.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=203bp
MSARRSPRLSPGKATTAAEPAAGGGDDGARGPPNAKRQRRATAPEVAANG
GARAASQEGKKPDKEEENGPSAYELQRLAKMKENAMMMASLGLGGAKDGM
RKAVNSDAAQRAKARGLGPRPNKVYPARSRESARVRGKTPEGLPMEDPEE
AFNRRRQGFDAQGTAAAAAAAAASPRSPRIEGDVSMEATNGTLDGTVRLR
QV*
back to top

mRNA from alignment at Ecto-sp13_S_contig13752:2854..4433+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13752.2948.1 ID=mRNA_Ecto-sp13_S_contig13752.2948.1|Name=mRNA_Ecto-sp13_S_contig13752.2948.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1580bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13752:2854..4433+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCGCGAGGCGTTCGCCCAGACTATCTCCGGGAAAGGCAACGACCGC
CGCCGAACCAGCAGCAGGCGGCGGTGACGATGGCGCTCGCGGGCCGCCGA
ACGCCAAGCGGCAGAGACGTGCTACCGCACCCGAGGTCGCAGCTAACGGC
GGCGCTCGTGCCGCAAGCCAAGAGGGGAAGAAGCCGGACAAGGAAGAGGA
GAACGGACCCTCGGCCTACGAGCTGCAGAGGCTCGCCAAGATGAAAGAGA
ACGCGATGATGATGGCCTCTCTGGGCCTCGGCGGCGCCAAGGATGGCATG
CGCAAGGCTGTCAACAGCGACGCGGCCCAGAGGGCCAAGGCGCGGGGTCT
GGGGCCCCGGCCGAACAAGGTCTATCCTGCCAGAAGCAGGTGATTTTTAC
GTGTGTTGCGGTTGTTGATGGCTTCTGATTTTCTACGCGAACGTTTCGAA
CTGTACACCCTTAGGCATAATTCAGTTCAGAGGGAGGTGAACGGACGGGA
AAGAAACACCCAAACAAAGTGCAGACCGTCGTCACCACTTGTTTGAAACC
GGAGAGTTGCCAACTTGAAGCTGAAGAATATCGAAGCTCAAGAAGTTTAC
CACAAGCGGGAGAGATTCCAGCCCACAACCTGGGGTCAATAGATGTTCGA
GGTTTGTGACCGCACCACCGGGGCGTAGAACCACCGTAGAAAGGCCTCGC
AGTGGGTCAAGATAGTTCGATGTGAATTTATCATAGATGTGCTCGCGTTG
CTTATTTTATTTGTGGGCTTCTGTTCATTTTTTTTCCTGCATTTTTTGAG
GTTTGGTGTGTCACATCTTTCTTGTTTGGTTTGGAGAAGACGTACGATAC
CGCATCAACATCCGCAAGCGGTGCTCGCATATCCGTCATGCTCTTGCCTT
AAAAGCAAATCTCATGATGCGGGTCTCGTGCCACTCAGAGCAACCATGGT
TTAACCATGGTTTGGGGGTTGGGGGGATGGAAGCCCGCCTACAGCTCATC
CGTGTAAGACTGCTGTCTGCAGGATTTTTCTGTCTGGTTCGCTGAGATTC
GCGAAGTTATTCGAGTCAACTCTCGTCAGCTTTGTGAGCTGTTGTGCTTG
CGAAATATCATAACCAACTAACTGGCAGCTAGCTTTTGTTTTGTCCTGCT
GCCTTTTTTTTTTTTCGACTTTTGCATCGTTCCTTGATGACGCTGCTGTG
CTCTCATGGCCCCACCCGGAGGGATCCCTTGGTTGACGAACGGCAAGACT
CGTAACGCTTATAATTTGCATGTCGTTCTTATAACGTTTGATCTTCAAAG
TAGTCATGTATCTGATTATTTGTTTGACCACAAACCTTGCCATGCCACCT
CAACACGCAGGGAATCTGCACGCGTGCGAGGCAAAACGCCAGAGGGTTTG
CCGATGGAGGACCCGGAAGAGGCGTTCAATCGTAGGAGGCAGGGCTTCGA
CGCCCAGGGAACGGCTGCGGCTGCTGCTGCGGCTGCGGCATCACCTAGGT
CGCCTCGCATTGAGGGAGACGTTTCCATGGAGGCAACCAACGGCACCCTG
GACGGGACTGTGCGCCTGAGACAGGTATGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13752:2854..4433+

>mRNA_Ecto-sp13_S_contig13752.2948.1 ID=mRNA_Ecto-sp13_S_contig13752.2948.1|Name=mRNA_Ecto-sp13_S_contig13752.2948.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=609bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13752:2854..4433+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCGCGAGGCGTTCGCCCAGACTATCTCCGGGAAAGGCAACGACCGC
CGCCGAACCAGCAGCAGGCGGCGGTGACGATGGCGCTCGCGGGCCGCCGA
ACGCCAAGCGGCAGAGACGTGCTACCGCACCCGAGGTCGCAGCTAACGGC
GGCGCTCGTGCCGCAAGCCAAGAGGGGAAGAAGCCGGACAAGGAAGAGGA
GAACGGACCCTCGGCCTACGAGCTGCAGAGGCTCGCCAAGATGAAAGAGA
ACGCGATGATGATGGCCTCTCTGGGCCTCGGCGGCGCCAAGGATGGCATG
CGCAAGGCTGTCAACAGCGACGCGGCCCAGAGGGCCAAGGCGCGGGGTCT
GGGGCCCCGGCCGAACAAGGTCTATCCTGCCAGAAGCAGGGAATCTGCAC
GCGTGCGAGGCAAAACGCCAGAGGGTTTGCCGATGGAGGACCCGGAAGAG
GCGTTCAATCGTAGGAGGCAGGGCTTCGACGCCCAGGGAACGGCTGCGGC
TGCTGCTGCGGCTGCGGCATCACCTAGGTCGCCTCGCATTGAGGGAGACG
TTTCCATGGAGGCAACCAACGGCACCCTGGACGGGACTGTGCGCCTGAGA
CAGGTATGA
back to top