mRNA_Ecto-sp13_S_contig1375.2946.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1375.2946.1
Unique NamemRNA_Ecto-sp13_S_contig1375.2946.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1375.2946.1 vs. uniprot
Match: D7FQQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQQ0_ECTSI)

HSP 1 Score: 594 bits (1532), Expect = 1.980e-207
Identity = 290/333 (87.09%), Postives = 294/333 (88.29%), Query Frame = 1
Query:    1 RATQDYFDRFPQENGSIFLFNTYTGEAIYDVDRWGSPLPGARTLSHWFAPTAVVPPATAGESVDTHHLRDLGDDFPGSEYRARWHCAELTQRNVRAALSRWRVARALCAVWVKDYDHEAERFSFTHQNTGEMQYHRPWGMGTVDLWAVPGEKVDEHLVSLFLRVESATVEEHTDEEPRDWEASKRHRRQLYKFYLEKKFSDGPHCRIVGPGSLKESSFTNVFLYPKKYY*TKPFSHPRDRQCEGARMRSQVTCMDGLVEKR-------------------------ISADAYFHVRNASEHYALNVIKLMFKH*DDLRVQGVGLQRMAGSLLE 924
            RATQDYFDRFPQENGSIFLFNTYTGEAIYDVDRWGSPLPGARTLSHWF PTAVVPPAT GE VDTH+LRDL DDFPGSEYRARWHCAEL QRNVRAALSRWRVARALCAVWVKDYDHEAERFSFTHQN  EMQYH+PWGMGTVDLWAVPGEKVDEHLVSLFLRVESAT EE TDEEPRDWEASKRHRR+LYKFY EKKFS+GPHCRIVGPGSLKESSFTNVFLYPKKYY TKPFSHPRDRQCEGARM SQVTCMDGLVEKR                         ISADAYFHVRNASEH ALNVIKLMFKH DDLRVQGVGLQRMAGSLLE
Sbjct:    8 RATQDYFDRFPQENGSIFLFNTYTGEAIYDVDRWGSPLPGARTLSHWFVPTAVVPPATEGEPVDTHNLRDLRDDFPGSEYRARWHCAELIQRNVRAALSRWRVARALCAVWVKDYDHEAERFSFTHQNNREMQYHKPWGMGTVDLWAVPGEKVDEHLVSLFLRVESATAEERTDEEPRDWEASKRHRRRLYKFYQEKKFSEGPHCRIVGPGSLKESSFTNVFLYPKKYYKTKPFSHPRDRQCEGARMGSQVTCMDGLVEKRTTSTENRNRKDASHGQAPYGEKGQLISADAYFHVRNASEHGALNVIKLMFKHRDDLRVQGVGLQRMAGSLLE 340          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1375.2946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQQ0_ECTSI1.980e-20787.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1375contigEcto-sp13_S_contig1375:1050..7012 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2091
Hectar predicted targeting categoryother localisation
Exons10
Ec32 ortholog descriptionArmadillo-like helical
Ec32 orthologEc-01_000080.1
Cds size660
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1375.2946.1prot_Ecto-sp13_S_contig1375.2946.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1375 1435..3737 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462733.8122902-UTR-Ecto-sp13_S_contig1375:1049..14341681462733.8122902-UTR-Ecto-sp13_S_contig1375:1049..1434Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1375 1050..1434 -
1681462733.874847-UTR-Ecto-sp13_S_contig1375:3737..38581681462733.874847-UTR-Ecto-sp13_S_contig1375:3737..3858Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1375 3738..3858 -
1681462733.8880827-UTR-Ecto-sp13_S_contig1375:4118..42601681462733.8880827-UTR-Ecto-sp13_S_contig1375:4118..4260Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1375 4119..4260 -
1681462733.8966627-UTR-Ecto-sp13_S_contig1375:4902..50941681462733.8966627-UTR-Ecto-sp13_S_contig1375:4902..5094Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1375 4903..5094 -
1681462733.904902-UTR-Ecto-sp13_S_contig1375:5865..59611681462733.904902-UTR-Ecto-sp13_S_contig1375:5865..5961Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1375 5866..5961 -
1681462733.9137232-UTR-Ecto-sp13_S_contig1375:6228..65221681462733.9137232-UTR-Ecto-sp13_S_contig1375:6228..6522Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1375 6229..6522 -
1681462733.9233034-UTR-Ecto-sp13_S_contig1375:6811..70121681462733.9233034-UTR-Ecto-sp13_S_contig1375:6811..7012Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1375 6812..7012 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462733.8240168-CDS-Ecto-sp13_S_contig1375:1434..15661681462733.8240168-CDS-Ecto-sp13_S_contig1375:1434..1566Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1375 1435..1566 -
1681462733.8338988-CDS-Ecto-sp13_S_contig1375:2051..22271681462733.8338988-CDS-Ecto-sp13_S_contig1375:2051..2227Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1375 2052..2227 -
1681462733.8440475-CDS-Ecto-sp13_S_contig1375:2492..26211681462733.8440475-CDS-Ecto-sp13_S_contig1375:2492..2621Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1375 2493..2621 -
1681462733.8542893-CDS-Ecto-sp13_S_contig1375:2953..30361681462733.8542893-CDS-Ecto-sp13_S_contig1375:2953..3036Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1375 2954..3036 -
1681462733.864518-CDS-Ecto-sp13_S_contig1375:3597..37371681462733.864518-CDS-Ecto-sp13_S_contig1375:3597..3737Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1375 3598..3737 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1375.2946.1

>prot_Ecto-sp13_S_contig1375.2946.1 ID=prot_Ecto-sp13_S_contig1375.2946.1|Name=mRNA_Ecto-sp13_S_contig1375.2946.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=220bp
MTSGLCIRKEIDREHADWLEDIVTAIMGVKSITQTVKEIDPDGKETRYDV
RVPSPMAHLVALHGCRILANMACDDHNRAEVARGSIGAVVHVAKLMADDP
VLVCAVSAAVYNFVSRQETTHQVVVEAGTAEALEGMLKNLEYTDRKEKEL
VTRALTALEPDGWRGVDHGLRDEASEDIPEHVDESSTSVDDSSGMGLTIA
SNNAGGEGTVLPMISPADG*
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mRNA from alignment at Ecto-sp13_S_contig1375:1050..7012-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1375.2946.1 ID=mRNA_Ecto-sp13_S_contig1375.2946.1|Name=mRNA_Ecto-sp13_S_contig1375.2946.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5963bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1375:1050..7012- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCGCCACACAGGACTACTTCGATCGGTTCCCGCAAGAGAACGGCTCCAT CTTTCTCTTCAATACCTATACAGGCGAAGCTATCTACGATGTTGATCGAT GGGGATCACCACTCCCTGGGGCTCGCACGCTGTCACATTGGTTCGCACCG ACGGCTGTAGTGCCTCCCGCCACAGCGGGTGAGTCCGTCGACACCCATCA CGTGAGTTCCCGGAAAACACTTCAGGGAGAAACCCATTGTGTCCGGGGTC ATTTGCTGATTGGGGTTAGAATCAAGTTTCCTAGATTACTATTCTCGCCG CGACGTGTGCTCCCATGCCTACACCTTTCCCCTGTACATGACCATCTACG GTGGTCCATGTTTTTTCTACTACATGGCGAGAACCACTTCTGCAGCTAGT GGGCACCACTTCCATCGACCTCCGGCTGTGTTCTGCCTACTACACCTTTC CAACGCCGTCCCCTCACACTGGCTTTTCCCGACGTCAAAGCTACGTGATC TGGGAGACGACTTCCCCGGCAGCGAGTACAGAGCCCGATGGCACTGCGCC GAACTTACACAGCGCAACGTCCGTGCGGCGCTGTCAAGGTGGCGGGTCGC CAGAGCGCTCTGTGCGGTATGGGTGAAGGATTACGACCACGAAGCAGAAC GGTTCTCGTTTACCCACCAAAACACCGGAGAGATGCAGTACCACAGGCCC TGGGGAATGGGCACAGTTGACCTTTGGGCAGTGCCGGGGGAAAAAGTCGA CGAGCATTTGGTCAGCCTCTTCCTCCGAGTTGAGGTAACGTGAAACTGTG GTACGTCTCAGCGTTTTCCACACTGCAAGCCCCGTTTAGCTGGAATGCCA AGCTCTGTCCTCAAACGCCTTACCTTCGCGTCTCTGGTGCAACCGGATGT TGCCATTTCCAGCAGACTTGGGGACAGAGCAAGTAATGCCGACAAAAAAC AGTGGCAGGGATTGAGTAATCTTGACGACACAGCCTGTACGCCGTACTTT GACGATGCTGGCAACAACTTGGCAGTTGCTATCGTAACCTTCCTACCCTA GAGCGCAACAGTGGAAGAGCATACGGACGAGGAGCCGCGAGACTGGGAAG CCTCCAAACGACATCGCCGGCAGTTGTACAAATTCTACCTGGAAAAGGTA AAGAGCTTCCTCTGTCGCCGAAAAATCATCACCCATTCGGTTGTCAACAC TGCTAACAAGTCCTGTTTCCGACTACCACTTTTCATCCAACAATCAATAA TGTGGGTCCTACTGTAGTCCTTGTTGTACCATTTTGTCGGCTAGCGCTAG TCTTCCCCATACGACACTACATAAATGCTTTCTGCGACTTATGTTTCGGA GGCACGTGGTGACCCTCACACGAGCCTTCTTCGATACGAATCACGGCTGA AGGAGCTGGCGTCGATGCTTTCTCTCAGCGCAAACAACCGCCAACCGAGT TTCCGAAATCAGCATCCTGTCCGCATGCACCTACATGCTCCTTGTCCCCT CAAACACACCTGTGTGTATGCATAAGCACGCTATTTGAATAGGGGAGCGA GATAGAAGTCAAAAAGTCCAACGACCACGGCGATTTACCGGTGAACCCAA AGCATTGTTTGTTCCGTCACGCAACACTGCTGTATACCCCTAAATCACAG GGGGGGCGTCTCGCCCTCACGCCACCCCCCACCGAGTGCCGAAGCACGAA CCTCAGAGCATGCGCATGATTTCCACCGAATGCCACGATTAATGGGGGAG ACGACAGCTTTTTCTCGACTGACACGTGCATGTTCTCTTCTCCGGGGTGC GTTTACCTCGAACGGCACATTGGGCCGAGCGTTGCTGCTTTCTCCATTCG TGCAATCTTCCCTCCTTCCCTCCTTCCCTCCTTGCCACAAACGCATGCTG TGTTATTGTACCACAAAGAAATTTAGCGATGGTCCTCACTGCCGCATCGT GGGGCCAGGGAGCCTAAAGGAAAGTTCGTTCACCAACGTGTTCCTCTACC CGAAGAAGTACTATTAGACGAAACCTTTCTCCCATCCGAGGGACAGGCAG TGCGAGGGGGCCAGGATGAGGAGCCAGGTGACGTGCATGGACGGCCTCGT CGAGAAAAGGGTGAGTAAAGAGTTCTGCCTTTCTGTCTGCTTGTGTGAGC AGGACAAACCTAATCAAGAACACATGCCGTGTTCATGAAGGAACAGGGGG AGGTGAACTGGTGATTGGTTGTGTGAGTTTGTGTGCCTCCACACGGTTGT TGAACGCTGCTGAAACTTGTCGAAAAAATATTTATTCGGACCATCTACCG AACACACGAACGATGCGTCACATGGTCAAGACCCTTACGACGAGAGAGGC ACCAATTGAGTTCAAAACAGTCTTGCCAGAAAAAAATAACGGCACATGGC GTGTGAAGCTACCTACGGCGTCGTTGGGAGAACGCCTATACCGCCATGCC GCACACTCGAACCCCCCCCGATCTACGCTCAAGACTCAAGCCCCCAATAG CTCTCCATGAATTCGGTCAGGGACTGCTTGTGTTGCTTAAAGGGATGTAT GCGAGAGTTGAACATGTCCGAGCTTTCTCTTGCGACAGGGGGAGCTCGGC AGATCCACAGCAAGCAATCTGCGTGCAGCGTTCCACGGCTTCAACGAACG CTTCTTCACACCGTGTCTTATGCACACCTCCAACTTACCGTGCCCCGTAT CGCTGCGTATTGATCGTTTTTCTCCATCTGTTGTACCCTTCGTTGTCCGC AGATCTCGGCGGATGCGTATTTCCACGTCCGCAACGCTAGCGAGCATTAC GCTTTGAACGTGATCAAGCTCATGTTCAAGCACTAAGATGATCTTCGCGT GCAAGGTGTTGGTCTGCAACGCATGGCAGGCTCGCTCCTGGAAGGTGGTA AAATAATTGCCTCGCACCACGCAAAAATCGCCGTTGTTTGCACACATGCA CCATTGAGGAAGACAAGTCCATCGTCGTCGAAATTTCATTCTCAGGGGTG AGCTGAATCCCCCCCTCGCGCCCTTCGACAGTTGCAAGGCCGTAAACTTC TTGTCGTAGTGAGCCAGTGGTACCGTTTCCATGCCGAACTTCTCAGCCTA TGGGTGCGCGTGGTCAAACACCGTTCTGAGGGAAACATACACATCTACTC ACAGAGGATGAGGCAGGAGGAGCTACGGAAGGCCAGAAAAAAACCTGGAG AAAGCCTTTCAGCTGCTTCGAGAGACCCCCAATGTAGAGTGGATACAGGC GGAGGCGTGCGCTGCACTGGCGTCAATGACGAGCGGCCTGTGCATTCGGA AGGAGATAGACCGCGAGCACGCTGACTGGCTGGAGGATATCGTGACAGCT ATCATGGGGGTGAAGAGCATCACCCAGACGGTGAAAGAGATCGATCCTGA CGGAAAGGAGACAAGGTGACCGGGGGTCATAAGCGGGACATCTATGTCAT CATGACCTCATGTCGCCTCCCCCCCTACCTCCGTCGAAGTACAATGTTTC TTGGGCGGGTCTTTTTTTACTTCTGGAGGCATCAAGCTATTTACCGAGTT ATCGACGTTGGAGGCTTGCACAAACCATTGTTGCAACGGGTCCGTCAATG CCTTTCGGTATGTCTTTCCGAGAGTATTCCACGGAGAAGCAACCTGAAAA GTCGAAATCGTCAAGTTGGTCGTCCCATCATCCAAAGTTCACTCAATCAC GCAGTCGTCGGATCGAAAACTGCAGAACGCTGTAGTAATCCTCATTGGGG CAGGCGAACCCTTTGTGAGTCTATCTCGAACGTCCTTTTCCCAGAGCGCT TTCATCCCGACCCCACATATAGGGAGATTTGGTGCCTTATTCAATGATTT CCGGACAAGCTCACTTTTTACTCAAACAACGTTTCGATCGAGCTAACTGA TGGATCCGAACGAATGTCTCGGCATCACAATGACGCAATATTGCGCCACA CACACCTCCTTTTTTCACGACAACAGGTATGACGTGAGAGTTCCTTCACC AATGGCCCATCTCGTGGCTCTGCATGGGTGCCGCATCTTGGCGAACATGG CGTGCGACGGTGAGACCGCAGGGTGACGCGTTACGTACTTTTTCAACCGT GGCGACGGCGGCCTTTCTTTTTGATCTGCTTTGCTTGTCTGCACGTCTCT CCACCGCGTCAAACTACGCCCCCAACGAGTGCACTCATGAACCTGCTCTT CACTACCTAGCTGGAGCTTGATAGTCTACTACGGTTGCACTCCGTCTCGT CGTGGCATGGACAAACCTTCTCGGTCCTGGTACAAGAACAATTCACTCCA TGACATGTATCCAAATATTGTCGGTGGGCAAAGGTTCTTCGGCATGCCGT CTACCCCTCGCCCTCTTTTTCCCGTCGCCGCTATCGGTCAGACCACAACA GAGCCGAGGTGGCGCGCGGATCTATTGGAGCGGTCGTCCACGTGGCGAAG CTCATGGCGGATGACCCGGTTCTAGTTTGCGCCGTTTCTGCTGCAGTGTA CAACTTCGTTAGCCGGCAGGGTAAGTCCACCTTGGCGAAAAACTCTTCGT TCACGAGTGAGTTTGTAAATGCATGCGTGGGTAGGCACGCGAAGTAAGTG CCGATGCGTGCTATAATTTTGCGGCACGAACAAGACTCGTTGATCCACGA CGATCATTCCGTAGACGCTCCCCTCCCCCGCGCGTCGCAGTAGGTGCCTG ACCTCGGCTGAAGAATCTCTCTTCACATGACAACTCATTCCTAGACTGAA TAGTGTCTTGATAACTTTTGATTCGTTTCGTGTAGAGACGACACACCAAG TTGTGGTCGAGGCCGGGACGGCGGAAGCATTAGAGGGGATGCTGAAGAAC CTGGAATATACCGATCGGAAAGAAAAAGAGCTGGTCACCAGGGCTCTAAC GGCTCTCGAGCCGGACGGGTGGAGAGGAGTCGATCATGGCCTTCGAGATG AGGCGAGTGAAGTGGAGGCTGAAACGGCGTAGTAGGTGACTTGGGTTATT AAGGAGAGTGGAGGCGTGGGAACTTCGAAAACAGGATCGGGATGAGCACC AACTACTCTGTCTCGAGTGTTATATTCAAGGAACAGAATCGTTTCGAAGA AAGGTCTCTGATGAGAGAAGAATAGTCTCGTTGGAGATGGAGGCTTCGAT CGCATCGGGGAGGAAAAGAGGCGCCCAAAAATATCGCATTGACGTGTTGT GGCTTGCAGCACCGTTCGTTATCATCTGCACCCCAACAACCGAGCACTAC TTTTCTCGCTTGAAATCAACGTTTGTTTTGCTGATCGATGAGATGGAGGT AAGCGGGCGTGTTCAACAGCTAAAACACCATCATGTTCTGCATTCAAGCC ACGATTCGTTGTTTCTGGCTCCCATTTGTTTGAAATTGTATGCTCATTTT CCCGATATCGAACCATCAACCTGTTCGTTTTGTTTTGTTCGCGCAGGACA TTCCGGAACATGTGGATGAATCGTCCACATCGGTTGACGACAGTAGCGGT ATGGGATTGACCATTGCTTCCAACAACGCGGGAGGAGAAGGCACCGTGTT GCCAATGATTAGCCCGGCGGATGGCTGAGAGAAAAACGCCACGTAGCCTT ATCTCAGAAACGGCCGGTCACCGGTTGCTGTAGCCCGTAGGTGTGCCTAA TATGAATGAGATCGAGTGTTTTGTGTGCAGTTATCCAGAGGAAAGTAAGT GTAGTCTACCCTCGACAACGTGCGACACAACCAATTGCTGTTTTGACGCC GTATGCGATAGTATGCTGCAGCTGTTCTGATGGCGCTGGCTACCCTTCCC AAACCCCTCCGTCTCTTTGCACATGATGTGTTCTTTTGCGAGGGCAAGTT TGCTTCACGTTGGCCCTTGACCTCGCCTGCTGAGTCCCGCCACCGGGCAT AATGAAATCTTGTCGTAGTCGCGAATGGGGTACATTATACTCGCTGACGG ATGGTACGAGAAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1375:1050..7012-

>mRNA_Ecto-sp13_S_contig1375.2946.1 ID=mRNA_Ecto-sp13_S_contig1375.2946.1|Name=mRNA_Ecto-sp13_S_contig1375.2946.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=660bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1375:1050..7012- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGAGCGGCCTGTGCATTCGGAAGGAGATAGACCGCGAGCACGCTGA
CTGGCTGGAGGATATCGTGACAGCTATCATGGGGGTGAAGAGCATCACCC
AGACGGTGAAAGAGATCGATCCTGACGGAAAGGAGACAAGGTATGACGTG
AGAGTTCCTTCACCAATGGCCCATCTCGTGGCTCTGCATGGGTGCCGCAT
CTTGGCGAACATGGCGTGCGACGACCACAACAGAGCCGAGGTGGCGCGCG
GATCTATTGGAGCGGTCGTCCACGTGGCGAAGCTCATGGCGGATGACCCG
GTTCTAGTTTGCGCCGTTTCTGCTGCAGTGTACAACTTCGTTAGCCGGCA
GGAGACGACACACCAAGTTGTGGTCGAGGCCGGGACGGCGGAAGCATTAG
AGGGGATGCTGAAGAACCTGGAATATACCGATCGGAAAGAAAAAGAGCTG
GTCACCAGGGCTCTAACGGCTCTCGAGCCGGACGGGTGGAGAGGAGTCGA
TCATGGCCTTCGAGATGAGGCGAGTGAAGACATTCCGGAACATGTGGATG
AATCGTCCACATCGGTTGACGACAGTAGCGGTATGGGATTGACCATTGCT
TCCAACAACGCGGGAGGAGAAGGCACCGTGTTGCCAATGATTAGCCCGGC
GGATGGCTGA
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