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Homology
BLAST of mRNA_Ecto-sp13_S_contig1375.2946.1 vs. uniprot
Match: D7FQQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQQ0_ECTSI) HSP 1 Score: 594 bits (1532), Expect = 1.980e-207 Identity = 290/333 (87.09%), Postives = 294/333 (88.29%), Query Frame = 1
Query: 1 RATQDYFDRFPQENGSIFLFNTYTGEAIYDVDRWGSPLPGARTLSHWFAPTAVVPPATAGESVDTHHLRDLGDDFPGSEYRARWHCAELTQRNVRAALSRWRVARALCAVWVKDYDHEAERFSFTHQNTGEMQYHRPWGMGTVDLWAVPGEKVDEHLVSLFLRVESATVEEHTDEEPRDWEASKRHRRQLYKFYLEKKFSDGPHCRIVGPGSLKESSFTNVFLYPKKYY*TKPFSHPRDRQCEGARMRSQVTCMDGLVEKR-------------------------ISADAYFHVRNASEHYALNVIKLMFKH*DDLRVQGVGLQRMAGSLLE 924
RATQDYFDRFPQENGSIFLFNTYTGEAIYDVDRWGSPLPGARTLSHWF PTAVVPPAT GE VDTH+LRDL DDFPGSEYRARWHCAEL QRNVRAALSRWRVARALCAVWVKDYDHEAERFSFTHQN EMQYH+PWGMGTVDLWAVPGEKVDEHLVSLFLRVESAT EE TDEEPRDWEASKRHRR+LYKFY EKKFS+GPHCRIVGPGSLKESSFTNVFLYPKKYY TKPFSHPRDRQCEGARM SQVTCMDGLVEKR ISADAYFHVRNASEH ALNVIKLMFKH DDLRVQGVGLQRMAGSLLE
Sbjct: 8 RATQDYFDRFPQENGSIFLFNTYTGEAIYDVDRWGSPLPGARTLSHWFVPTAVVPPATEGEPVDTHNLRDLRDDFPGSEYRARWHCAELIQRNVRAALSRWRVARALCAVWVKDYDHEAERFSFTHQNNREMQYHKPWGMGTVDLWAVPGEKVDEHLVSLFLRVESATAEERTDEEPRDWEASKRHRRRLYKFYQEKKFSEGPHCRIVGPGSLKESSFTNVFLYPKKYYKTKPFSHPRDRQCEGARMGSQVTCMDGLVEKRTTSTENRNRKDASHGQAPYGEKGQLISADAYFHVRNASEHGALNVIKLMFKHRDDLRVQGVGLQRMAGSLLE 340
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 2091 |
| Hectar predicted targeting category | other localisation |
| Exons | 10 |
| Ec32 ortholog description | Armadillo-like helical |
| Ec32 ortholog | Ec-01_000080.1 |
| Cds size | 660 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462733.8122902-UTR-Ecto-sp13_S_contig1375:1049..1434 | 1681462733.8122902-UTR-Ecto-sp13_S_contig1375:1049..1434 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig1375 1050..1434 - |
| 1681462733.874847-UTR-Ecto-sp13_S_contig1375:3737..3858 | 1681462733.874847-UTR-Ecto-sp13_S_contig1375:3737..3858 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig1375 3738..3858 - |
| 1681462733.8880827-UTR-Ecto-sp13_S_contig1375:4118..4260 | 1681462733.8880827-UTR-Ecto-sp13_S_contig1375:4118..4260 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig1375 4119..4260 - |
| 1681462733.8966627-UTR-Ecto-sp13_S_contig1375:4902..5094 | 1681462733.8966627-UTR-Ecto-sp13_S_contig1375:4902..5094 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig1375 4903..5094 - |
| 1681462733.904902-UTR-Ecto-sp13_S_contig1375:5865..5961 | 1681462733.904902-UTR-Ecto-sp13_S_contig1375:5865..5961 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig1375 5866..5961 - |
| 1681462733.9137232-UTR-Ecto-sp13_S_contig1375:6228..6522 | 1681462733.9137232-UTR-Ecto-sp13_S_contig1375:6228..6522 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig1375 6229..6522 - |
| 1681462733.9233034-UTR-Ecto-sp13_S_contig1375:6811..7012 | 1681462733.9233034-UTR-Ecto-sp13_S_contig1375:6811..7012 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig1375 6812..7012 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462733.8240168-CDS-Ecto-sp13_S_contig1375:1434..1566 | 1681462733.8240168-CDS-Ecto-sp13_S_contig1375:1434..1566 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1375 1435..1566 - |
| 1681462733.8338988-CDS-Ecto-sp13_S_contig1375:2051..2227 | 1681462733.8338988-CDS-Ecto-sp13_S_contig1375:2051..2227 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1375 2052..2227 - |
| 1681462733.8440475-CDS-Ecto-sp13_S_contig1375:2492..2621 | 1681462733.8440475-CDS-Ecto-sp13_S_contig1375:2492..2621 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1375 2493..2621 - |
| 1681462733.8542893-CDS-Ecto-sp13_S_contig1375:2953..3036 | 1681462733.8542893-CDS-Ecto-sp13_S_contig1375:2953..3036 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1375 2954..3036 - |
| 1681462733.864518-CDS-Ecto-sp13_S_contig1375:3597..3737 | 1681462733.864518-CDS-Ecto-sp13_S_contig1375:3597..3737 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1375 3598..3737 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1375.2946.1 >prot_Ecto-sp13_S_contig1375.2946.1 ID=prot_Ecto-sp13_S_contig1375.2946.1|Name=mRNA_Ecto-sp13_S_contig1375.2946.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=220bp
MTSGLCIRKEIDREHADWLEDIVTAIMGVKSITQTVKEIDPDGKETRYDV RVPSPMAHLVALHGCRILANMACDDHNRAEVARGSIGAVVHVAKLMADDP VLVCAVSAAVYNFVSRQETTHQVVVEAGTAEALEGMLKNLEYTDRKEKEL VTRALTALEPDGWRGVDHGLRDEASEDIPEHVDESSTSVDDSSGMGLTIA SNNAGGEGTVLPMISPADG* back to topmRNA from alignment at Ecto-sp13_S_contig1375:1050..7012- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig1375.2946.1 ID=mRNA_Ecto-sp13_S_contig1375.2946.1|Name=mRNA_Ecto-sp13_S_contig1375.2946.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5963bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1375:1050..7012- (Ectocarpus species13 EcNAP12_S_4_19m) CGCGCCACACAGGACTACTTCGATCGGTTCCCGCAAGAGAACGGCTCCAT
CTTTCTCTTCAATACCTATACAGGCGAAGCTATCTACGATGTTGATCGAT
GGGGATCACCACTCCCTGGGGCTCGCACGCTGTCACATTGGTTCGCACCG
ACGGCTGTAGTGCCTCCCGCCACAGCGGGTGAGTCCGTCGACACCCATCA
CGTGAGTTCCCGGAAAACACTTCAGGGAGAAACCCATTGTGTCCGGGGTC
ATTTGCTGATTGGGGTTAGAATCAAGTTTCCTAGATTACTATTCTCGCCG
CGACGTGTGCTCCCATGCCTACACCTTTCCCCTGTACATGACCATCTACG
GTGGTCCATGTTTTTTCTACTACATGGCGAGAACCACTTCTGCAGCTAGT
GGGCACCACTTCCATCGACCTCCGGCTGTGTTCTGCCTACTACACCTTTC
CAACGCCGTCCCCTCACACTGGCTTTTCCCGACGTCAAAGCTACGTGATC
TGGGAGACGACTTCCCCGGCAGCGAGTACAGAGCCCGATGGCACTGCGCC
GAACTTACACAGCGCAACGTCCGTGCGGCGCTGTCAAGGTGGCGGGTCGC
CAGAGCGCTCTGTGCGGTATGGGTGAAGGATTACGACCACGAAGCAGAAC
GGTTCTCGTTTACCCACCAAAACACCGGAGAGATGCAGTACCACAGGCCC
TGGGGAATGGGCACAGTTGACCTTTGGGCAGTGCCGGGGGAAAAAGTCGA
CGAGCATTTGGTCAGCCTCTTCCTCCGAGTTGAGGTAACGTGAAACTGTG
GTACGTCTCAGCGTTTTCCACACTGCAAGCCCCGTTTAGCTGGAATGCCA
AGCTCTGTCCTCAAACGCCTTACCTTCGCGTCTCTGGTGCAACCGGATGT
TGCCATTTCCAGCAGACTTGGGGACAGAGCAAGTAATGCCGACAAAAAAC
AGTGGCAGGGATTGAGTAATCTTGACGACACAGCCTGTACGCCGTACTTT
GACGATGCTGGCAACAACTTGGCAGTTGCTATCGTAACCTTCCTACCCTA
GAGCGCAACAGTGGAAGAGCATACGGACGAGGAGCCGCGAGACTGGGAAG
CCTCCAAACGACATCGCCGGCAGTTGTACAAATTCTACCTGGAAAAGGTA
AAGAGCTTCCTCTGTCGCCGAAAAATCATCACCCATTCGGTTGTCAACAC
TGCTAACAAGTCCTGTTTCCGACTACCACTTTTCATCCAACAATCAATAA
TGTGGGTCCTACTGTAGTCCTTGTTGTACCATTTTGTCGGCTAGCGCTAG
TCTTCCCCATACGACACTACATAAATGCTTTCTGCGACTTATGTTTCGGA
GGCACGTGGTGACCCTCACACGAGCCTTCTTCGATACGAATCACGGCTGA
AGGAGCTGGCGTCGATGCTTTCTCTCAGCGCAAACAACCGCCAACCGAGT
TTCCGAAATCAGCATCCTGTCCGCATGCACCTACATGCTCCTTGTCCCCT
CAAACACACCTGTGTGTATGCATAAGCACGCTATTTGAATAGGGGAGCGA
GATAGAAGTCAAAAAGTCCAACGACCACGGCGATTTACCGGTGAACCCAA
AGCATTGTTTGTTCCGTCACGCAACACTGCTGTATACCCCTAAATCACAG
GGGGGGCGTCTCGCCCTCACGCCACCCCCCACCGAGTGCCGAAGCACGAA
CCTCAGAGCATGCGCATGATTTCCACCGAATGCCACGATTAATGGGGGAG
ACGACAGCTTTTTCTCGACTGACACGTGCATGTTCTCTTCTCCGGGGTGC
GTTTACCTCGAACGGCACATTGGGCCGAGCGTTGCTGCTTTCTCCATTCG
TGCAATCTTCCCTCCTTCCCTCCTTCCCTCCTTGCCACAAACGCATGCTG
TGTTATTGTACCACAAAGAAATTTAGCGATGGTCCTCACTGCCGCATCGT
GGGGCCAGGGAGCCTAAAGGAAAGTTCGTTCACCAACGTGTTCCTCTACC
CGAAGAAGTACTATTAGACGAAACCTTTCTCCCATCCGAGGGACAGGCAG
TGCGAGGGGGCCAGGATGAGGAGCCAGGTGACGTGCATGGACGGCCTCGT
CGAGAAAAGGGTGAGTAAAGAGTTCTGCCTTTCTGTCTGCTTGTGTGAGC
AGGACAAACCTAATCAAGAACACATGCCGTGTTCATGAAGGAACAGGGGG
AGGTGAACTGGTGATTGGTTGTGTGAGTTTGTGTGCCTCCACACGGTTGT
TGAACGCTGCTGAAACTTGTCGAAAAAATATTTATTCGGACCATCTACCG
AACACACGAACGATGCGTCACATGGTCAAGACCCTTACGACGAGAGAGGC
ACCAATTGAGTTCAAAACAGTCTTGCCAGAAAAAAATAACGGCACATGGC
GTGTGAAGCTACCTACGGCGTCGTTGGGAGAACGCCTATACCGCCATGCC
GCACACTCGAACCCCCCCCGATCTACGCTCAAGACTCAAGCCCCCAATAG
CTCTCCATGAATTCGGTCAGGGACTGCTTGTGTTGCTTAAAGGGATGTAT
GCGAGAGTTGAACATGTCCGAGCTTTCTCTTGCGACAGGGGGAGCTCGGC
AGATCCACAGCAAGCAATCTGCGTGCAGCGTTCCACGGCTTCAACGAACG
CTTCTTCACACCGTGTCTTATGCACACCTCCAACTTACCGTGCCCCGTAT
CGCTGCGTATTGATCGTTTTTCTCCATCTGTTGTACCCTTCGTTGTCCGC
AGATCTCGGCGGATGCGTATTTCCACGTCCGCAACGCTAGCGAGCATTAC
GCTTTGAACGTGATCAAGCTCATGTTCAAGCACTAAGATGATCTTCGCGT
GCAAGGTGTTGGTCTGCAACGCATGGCAGGCTCGCTCCTGGAAGGTGGTA
AAATAATTGCCTCGCACCACGCAAAAATCGCCGTTGTTTGCACACATGCA
CCATTGAGGAAGACAAGTCCATCGTCGTCGAAATTTCATTCTCAGGGGTG
AGCTGAATCCCCCCCTCGCGCCCTTCGACAGTTGCAAGGCCGTAAACTTC
TTGTCGTAGTGAGCCAGTGGTACCGTTTCCATGCCGAACTTCTCAGCCTA
TGGGTGCGCGTGGTCAAACACCGTTCTGAGGGAAACATACACATCTACTC
ACAGAGGATGAGGCAGGAGGAGCTACGGAAGGCCAGAAAAAAACCTGGAG
AAAGCCTTTCAGCTGCTTCGAGAGACCCCCAATGTAGAGTGGATACAGGC
GGAGGCGTGCGCTGCACTGGCGTCAATGACGAGCGGCCTGTGCATTCGGA
AGGAGATAGACCGCGAGCACGCTGACTGGCTGGAGGATATCGTGACAGCT
ATCATGGGGGTGAAGAGCATCACCCAGACGGTGAAAGAGATCGATCCTGA
CGGAAAGGAGACAAGGTGACCGGGGGTCATAAGCGGGACATCTATGTCAT
CATGACCTCATGTCGCCTCCCCCCCTACCTCCGTCGAAGTACAATGTTTC
TTGGGCGGGTCTTTTTTTACTTCTGGAGGCATCAAGCTATTTACCGAGTT
ATCGACGTTGGAGGCTTGCACAAACCATTGTTGCAACGGGTCCGTCAATG
CCTTTCGGTATGTCTTTCCGAGAGTATTCCACGGAGAAGCAACCTGAAAA
GTCGAAATCGTCAAGTTGGTCGTCCCATCATCCAAAGTTCACTCAATCAC
GCAGTCGTCGGATCGAAAACTGCAGAACGCTGTAGTAATCCTCATTGGGG
CAGGCGAACCCTTTGTGAGTCTATCTCGAACGTCCTTTTCCCAGAGCGCT
TTCATCCCGACCCCACATATAGGGAGATTTGGTGCCTTATTCAATGATTT
CCGGACAAGCTCACTTTTTACTCAAACAACGTTTCGATCGAGCTAACTGA
TGGATCCGAACGAATGTCTCGGCATCACAATGACGCAATATTGCGCCACA
CACACCTCCTTTTTTCACGACAACAGGTATGACGTGAGAGTTCCTTCACC
AATGGCCCATCTCGTGGCTCTGCATGGGTGCCGCATCTTGGCGAACATGG
CGTGCGACGGTGAGACCGCAGGGTGACGCGTTACGTACTTTTTCAACCGT
GGCGACGGCGGCCTTTCTTTTTGATCTGCTTTGCTTGTCTGCACGTCTCT
CCACCGCGTCAAACTACGCCCCCAACGAGTGCACTCATGAACCTGCTCTT
CACTACCTAGCTGGAGCTTGATAGTCTACTACGGTTGCACTCCGTCTCGT
CGTGGCATGGACAAACCTTCTCGGTCCTGGTACAAGAACAATTCACTCCA
TGACATGTATCCAAATATTGTCGGTGGGCAAAGGTTCTTCGGCATGCCGT
CTACCCCTCGCCCTCTTTTTCCCGTCGCCGCTATCGGTCAGACCACAACA
GAGCCGAGGTGGCGCGCGGATCTATTGGAGCGGTCGTCCACGTGGCGAAG
CTCATGGCGGATGACCCGGTTCTAGTTTGCGCCGTTTCTGCTGCAGTGTA
CAACTTCGTTAGCCGGCAGGGTAAGTCCACCTTGGCGAAAAACTCTTCGT
TCACGAGTGAGTTTGTAAATGCATGCGTGGGTAGGCACGCGAAGTAAGTG
CCGATGCGTGCTATAATTTTGCGGCACGAACAAGACTCGTTGATCCACGA
CGATCATTCCGTAGACGCTCCCCTCCCCCGCGCGTCGCAGTAGGTGCCTG
ACCTCGGCTGAAGAATCTCTCTTCACATGACAACTCATTCCTAGACTGAA
TAGTGTCTTGATAACTTTTGATTCGTTTCGTGTAGAGACGACACACCAAG
TTGTGGTCGAGGCCGGGACGGCGGAAGCATTAGAGGGGATGCTGAAGAAC
CTGGAATATACCGATCGGAAAGAAAAAGAGCTGGTCACCAGGGCTCTAAC
GGCTCTCGAGCCGGACGGGTGGAGAGGAGTCGATCATGGCCTTCGAGATG
AGGCGAGTGAAGTGGAGGCTGAAACGGCGTAGTAGGTGACTTGGGTTATT
AAGGAGAGTGGAGGCGTGGGAACTTCGAAAACAGGATCGGGATGAGCACC
AACTACTCTGTCTCGAGTGTTATATTCAAGGAACAGAATCGTTTCGAAGA
AAGGTCTCTGATGAGAGAAGAATAGTCTCGTTGGAGATGGAGGCTTCGAT
CGCATCGGGGAGGAAAAGAGGCGCCCAAAAATATCGCATTGACGTGTTGT
GGCTTGCAGCACCGTTCGTTATCATCTGCACCCCAACAACCGAGCACTAC
TTTTCTCGCTTGAAATCAACGTTTGTTTTGCTGATCGATGAGATGGAGGT
AAGCGGGCGTGTTCAACAGCTAAAACACCATCATGTTCTGCATTCAAGCC
ACGATTCGTTGTTTCTGGCTCCCATTTGTTTGAAATTGTATGCTCATTTT
CCCGATATCGAACCATCAACCTGTTCGTTTTGTTTTGTTCGCGCAGGACA
TTCCGGAACATGTGGATGAATCGTCCACATCGGTTGACGACAGTAGCGGT
ATGGGATTGACCATTGCTTCCAACAACGCGGGAGGAGAAGGCACCGTGTT
GCCAATGATTAGCCCGGCGGATGGCTGAGAGAAAAACGCCACGTAGCCTT
ATCTCAGAAACGGCCGGTCACCGGTTGCTGTAGCCCGTAGGTGTGCCTAA
TATGAATGAGATCGAGTGTTTTGTGTGCAGTTATCCAGAGGAAAGTAAGT
GTAGTCTACCCTCGACAACGTGCGACACAACCAATTGCTGTTTTGACGCC
GTATGCGATAGTATGCTGCAGCTGTTCTGATGGCGCTGGCTACCCTTCCC
AAACCCCTCCGTCTCTTTGCACATGATGTGTTCTTTTGCGAGGGCAAGTT
TGCTTCACGTTGGCCCTTGACCTCGCCTGCTGAGTCCCGCCACCGGGCAT
AATGAAATCTTGTCGTAGTCGCGAATGGGGTACATTATACTCGCTGACGG
ATGGTACGAGAAT back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig1375:1050..7012- >mRNA_Ecto-sp13_S_contig1375.2946.1 ID=mRNA_Ecto-sp13_S_contig1375.2946.1|Name=mRNA_Ecto-sp13_S_contig1375.2946.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=660bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1375:1050..7012- (Ectocarpus species13 EcNAP12_S_4_19m) ATGACGAGCGGCCTGTGCATTCGGAAGGAGATAGACCGCGAGCACGCTGA CTGGCTGGAGGATATCGTGACAGCTATCATGGGGGTGAAGAGCATCACCC AGACGGTGAAAGAGATCGATCCTGACGGAAAGGAGACAAGGTATGACGTG AGAGTTCCTTCACCAATGGCCCATCTCGTGGCTCTGCATGGGTGCCGCAT CTTGGCGAACATGGCGTGCGACGACCACAACAGAGCCGAGGTGGCGCGCG GATCTATTGGAGCGGTCGTCCACGTGGCGAAGCTCATGGCGGATGACCCG GTTCTAGTTTGCGCCGTTTCTGCTGCAGTGTACAACTTCGTTAGCCGGCA GGAGACGACACACCAAGTTGTGGTCGAGGCCGGGACGGCGGAAGCATTAG AGGGGATGCTGAAGAACCTGGAATATACCGATCGGAAAGAAAAAGAGCTG GTCACCAGGGCTCTAACGGCTCTCGAGCCGGACGGGTGGAGAGGAGTCGA TCATGGCCTTCGAGATGAGGCGAGTGAAGACATTCCGGAACATGTGGATG AATCGTCCACATCGGTTGACGACAGTAGCGGTATGGGATTGACCATTGCT TCCAACAACGCGGGAGGAGAAGGCACCGTGTTGCCAATGATTAGCCCGGC GGATGGCTGA back to top
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