mRNA_Ecto-sp13_S_contig13742.2945.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13742.2945.1
Unique NamemRNA_Ecto-sp13_S_contig13742.2945.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13742.2945.1 vs. uniprot
Match: A0A6H5KC70_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC70_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 5.060e-10
Identity = 48/100 (48.00%), Postives = 60/100 (60.00%), Query Frame = 1 
Query:  238 MVEHAGLQLQHSEQEAQGGLEHGTIRIRRLLGGKLRFGDRAFSSSRRCTGFASNRCSDRLEEGEGGRDSVQWRS---WGFHGNGAAAAGAGGLSAGLFDS 528
            MV HAG   Q SEQE QGG+E     +RRL          A+ +      F+++R S  LEEG GGRDS+QW+S   WG + +GAAAAG GGLS G+F S
Sbjct:    1 MVPHAGA--QGSEQEDQGGVERVEFSVRRLRPRP------AWDAESGGPSFSASRSSVHLEEGRGGRDSMQWQSPTDWGPNRDGAAAAGTGGLSTGVFGS 92
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BLAST of mRNA_Ecto-sp13_S_contig13742.2945.1 vs. uniprot
Match: A0A6H5KMK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK4_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 5.280e-10
Identity = 51/114 (44.74%), Postives = 65/114 (57.02%), Query Frame = 1 
Query:  238 MVEHAGLQLQHSEQEAQGGLEHGTIRIRRLLGGKLRFGDRAFSSSRRCTGFASNRCSDRLEEGEGGRDSVQWRS---WGFHGNGAAAAGAGGLSAGLFDSSSVGFGTGVGGSTM 570
            MV HAG   Q SEQE QGG+E     +RRL          A+ +      F+++R S  LEEG G RDS+ W+S   WG + +GAAAAG GGLS G+F  + +G  TG G S M
Sbjct:   97 MVPHAGA--QGSEQEDQGGVERVEFSVRRLRRRP------AWDAESGGPSFSTSRSSVHLEEGRGDRDSMHWQSPTDWGPNRDGAAAAGTGGLSMGVFGLNGMGLRTGTGRSVM 202
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13742.2945.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KC70_9PHAE5.060e-1048.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMK4_9PHAE5.280e-1044.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13742contigEcto-sp13_S_contig13742:2605..4289 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size681
Hectar predicted targeting categoryother localisation
Exons2
Cds size444
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462733.7538598-UTR-Ecto-sp13_S_contig13742:2604..28051681462733.7538598-UTR-Ecto-sp13_S_contig13742:2604..2805Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13742 2605..2805 +
1681462733.7683063-UTR-Ecto-sp13_S_contig13742:3809..38451681462733.7683063-UTR-Ecto-sp13_S_contig13742:3809..3845Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13742 3810..3845 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462733.7783048-CDS-Ecto-sp13_S_contig13742:3845..42891681462733.7783048-CDS-Ecto-sp13_S_contig13742:3845..4289Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13742 3846..4289 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13742.2945.1prot_Ecto-sp13_S_contig13742.2945.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13742 3846..4289 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13742.2945.1

>prot_Ecto-sp13_S_contig13742.2945.1 ID=prot_Ecto-sp13_S_contig13742.2945.1|Name=mRNA_Ecto-sp13_S_contig13742.2945.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=148bp
MVEHAGLQLQHSEQEAQGGLEHGTIRIRRLLGGKLRFGDRAFSSSRRCTG
FASNRCSDRLEEGEGGRDSVQWRSWGFHGNGAAAAGAGGLSAGLFDSSSV
GFGTGVGGSTMGGAPVSPASVSAASIAPRWGARTGVGGLTLERAPESP
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mRNA from alignment at Ecto-sp13_S_contig13742:2605..4289+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13742.2945.1 ID=mRNA_Ecto-sp13_S_contig13742.2945.1|Name=mRNA_Ecto-sp13_S_contig13742.2945.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1685bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13742:2605..4289+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCCGGCGGTCCTCACCGCACACCTCACCAGCTGCACCACGCCAGACGGT
GAAACGAGGGTCCCGCCAATCACAGTACGTACGAGGCGCAGCGCCTCCCC
GCCCCGCAAGATTTCCGCAACACGCAATGTAGAGGACGGTCGACCACGAT
AGGGCAGCAGCACCTCCGCTGGAGCAATCCGCGCAACAAGTTCAAGACCA
TGTGTGTATCGTAACAGTCAAGTCCAGGGTTCGTGTCAGTAGTCTTAGCG
TTGGGACGTTTTGAACGTTCAACAATAGGCTACAAAATGGCTTCCTTTAC
GTTTCAGTGTAGGGCGCACAAGTGGTGCGCAACCTATGTTTCGACATGTA
CAAATTGCTTTTCCGTAGCATGCAGTTCCAAACTGCCGCGTTTGAATTGA
GGACGCCAAGTTTGCACACTACCAAGTTGGTGGTGTAGACGGCGCACAAT
TTGATGCTGCAGTCGTGCTGTAGCTCTTATCTTTGACGTCACGCTGGCAA
GCTTCACCAGCAGCTTGATCGAAAGGTGTTTGCTCGCTGCCACAGCAGTG
AGTAGGAAACCTCGACACTTCTGTGTATACGTTGAAGCAGCTCTCCTCTG
CTCGAAACCTCGCCCCTGTGCTGGTGGTCTTTCGACACTGCGTACGATAT
CCGTACATCGATGGTGTATAAATAGACAGACTGTACGCAGAAAAGATTAT
GCTCGTAGATCACTTTTGTTCTCCATCAGTCTACGTACAACGCGTGAGGA
GCACATGTGTAGGCAAGCGTCCTCTCGCTCCCCCCCCTTCTCAGTCGACT
CTCTGAAAGTACGTAAAATATGTATCCGTGGGTGAACATCTCGACGGTAA
ACAAGTCCCGTCCCTCCCCATGGAGAATTGCTAAATGCAAGCAATTCGAC
ACACAGGGAGGATATTGGGTGTGCCACGGAGCGTACAAGAACGTCTTGAT
CCAAAACGACTTACTCTGCGAGCTGCAATGATCACTCGGTTGGTCAGTGC
AGGTTAGTGACACAGTGTACAGTTGTTTCAATCCCCCACCACCTTACGGA
GGTGTTCAAGATGGCACGAGATAAGCCCCATTTTTGGTCACGCTGTGGCC
TCTCTCCGCTACCACGCTCTCAAATGACTGCATCCTCCTGATGGGACGTA
CCACTGTACTTGAGCTTTCCATCCCCCCCCCCGTCCTCCTGCATTGTGAC
CCCAGGATCAATCTCTGGCATCATTGGGACCCGTGGGCGGCATGGTCGAG
CATGCGGGTTTACAGCTACAACATTCGGAGCAAGAGGCTCAGGGCGGATT
GGAGCATGGAACAATCAGAATACGTCGTCTGCTAGGAGGGAAACTTCGGT
TCGGTGATCGTGCTTTCTCGTCCTCACGGAGGTGTACTGGTTTCGCGTCT
AACAGGTGTTCAGATCGTCTGGAAGAGGGCGAGGGAGGCAGGGACTCAGT
GCAATGGCGGTCCTGGGGGTTCCACGGAAATGGAGCTGCGGCAGCTGGTG
CTGGCGGCCTTAGTGCGGGGTTGTTCGACTCGAGCAGTGTGGGATTTGGC
ACGGGCGTTGGCGGATCAACCATGGGAGGTGCGCCTGTATCCCCGGCCTC
TGTGTCGGCCGCCAGCATCGCCCCTCGCTGGGGTGCGCGCACGGGCGTTG
GCGGATTAACCCTGGAACGTGCGCCAGAGTCCCCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13742:2605..4289+

>mRNA_Ecto-sp13_S_contig13742.2945.1 ID=mRNA_Ecto-sp13_S_contig13742.2945.1|Name=mRNA_Ecto-sp13_S_contig13742.2945.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=444bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13742:2605..4289+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCGAGCATGCGGGTTTACAGCTACAACATTCGGAGCAAGAGGCTCA
GGGCGGATTGGAGCATGGAACAATCAGAATACGTCGTCTGCTAGGAGGGA
AACTTCGGTTCGGTGATCGTGCTTTCTCGTCCTCACGGAGGTGTACTGGT
TTCGCGTCTAACAGGTGTTCAGATCGTCTGGAAGAGGGCGAGGGAGGCAG
GGACTCAGTGCAATGGCGGTCCTGGGGGTTCCACGGAAATGGAGCTGCGG
CAGCTGGTGCTGGCGGCCTTAGTGCGGGGTTGTTCGACTCGAGCAGTGTG
GGATTTGGCACGGGCGTTGGCGGATCAACCATGGGAGGTGCGCCTGTATC
CCCGGCCTCTGTGTCGGCCGCCAGCATCGCCCCTCGCTGGGGTGCGCGCA
CGGGCGTTGGCGGATTAACCCTGGAACGTGCGCCAGAGTCCCCG
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