mRNA_Ecto-sp13_S_contig13741.2944.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13741.2944.1
Unique NamemRNA_Ecto-sp13_S_contig13741.2944.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13741.2944.1 vs. uniprot
Match: D8LBK0_ECTSI (Bromodomain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK0_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 2.500e-31
Identity = 61/66 (92.42%), Postives = 62/66 (93.94%), Query Frame = 1 
Query:    1 WVIIPPELKTLPAKLLPRFVDLRRGKAADVVKTTPEDGAAALSSALSPSWLRRLYRTPRDLEGDES 198
            WVIIPPELKTLPAKLLPRF DLRRGKAADVVKTTPE+GAA LSSALSPSWLRRLYRTPRD  GDES
Sbjct: 1467 WVIIPPELKTLPAKLLPRFADLRRGKAADVVKTTPEEGAATLSSALSPSWLRRLYRTPRDRAGDES 1532
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13741.2944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBK0_ECTSI2.500e-3192.42Bromodomain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13741contigEcto-sp13_S_contig13741:3686..4319 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score126.3
Seed ortholog evalue6.7e-27
Seed eggNOG ortholog2880.D8LBK0
Model size258
KEGG koko:K10608,ko:K11658,ko:K11756,ko:K12035
KEGG Pathwayko04120,ko05206,map04120,map05206
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.chromatin remodeling
EggNOG OGsCOG5076@1,KOG1245@2759,KOG1474@2759,KOG2177@1,KOG2177@2759
EC2.3.2.27
Cds size255
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03021,ko03036,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462733.7092748-CDS-Ecto-sp13_S_contig13741:3687..38301681462733.7092748-CDS-Ecto-sp13_S_contig13741:3687..3830Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13741 3688..3830 -
1681462733.7223864-CDS-Ecto-sp13_S_contig13741:4207..43191681462733.7223864-CDS-Ecto-sp13_S_contig13741:4207..4319Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13741 4208..4319 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13741.2944.1prot_Ecto-sp13_S_contig13741.2944.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13741 3688..4319 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13741.2944.1

>prot_Ecto-sp13_S_contig13741.2944.1 ID=prot_Ecto-sp13_S_contig13741.2944.1|Name=mRNA_Ecto-sp13_S_contig13741.2944.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=85bp
WVIIPPELKTLPAKLLPRFVDLRRGKAADVVKTTPEDGAAALSSALSPSW
LRRLYRTPRDLEGDESSSSSSSSSSSSDSEDSGSD
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mRNA from alignment at Ecto-sp13_S_contig13741:3686..4319-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13741.2944.1 ID=mRNA_Ecto-sp13_S_contig13741.2944.1|Name=mRNA_Ecto-sp13_S_contig13741.2944.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=634bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13741:3686..4319- (Ectocarpus species13 EcNAP12_S_4_19m)
TGGGTAATCATTCCTCCCGAGCTCAAGACGCTCCCGGCCAAGCTGCTGCC
GCGGTTCGTAGACCTGAGGCGAGGAAAGGCGGCCGACGTCGTCAAGACTA
CGCCAGAGGACGGTGAGGGGGATGCCATGCCGACCATCGTGGCCGTGTTA
TTTTTTGCTGTTGTTGGCAAGAAGAAGAAAGTCAGCACCGTGTGTAGCGC
GCATGAAAGCGATGCCTGGTGCAGCCACAAGAAATGTAAGTGTTCTGTCT
TACTTGAAGTCCATTCAGAGACGTCCTTTTGTCGTCTTGCTTTGTGAGAC
TCGTGGGGCATTACTGGCTGTATGTTGTTGATAACGCCGTTCGTTGCTGG
TAACGTGTGACACTGGTGTTGTATTGTTCGCCATGTTTTCGATACGATCA
TTCTTCTCTTGACAACGATGTCGTTTTTGTCGATGTCGCTATCACTGCCG
CTGATGCTGGCTTTTTCTTGTTGTTCTCTCGTGCACCAGGAGCCGCCGCC
CTGTCGTCGGCGCTCTCGCCGAGCTGGTTGCGGCGGCTGTATCGCACCCC
CCGAGACCTCGAGGGAGACGAGTCGTCGTCGTCGTCGAGCAGTAGCAGCA
GCAGCAGCGATTCTGAGGATTCCGGTTCCGACTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13741:3686..4319-

>mRNA_Ecto-sp13_S_contig13741.2944.1 ID=mRNA_Ecto-sp13_S_contig13741.2944.1|Name=mRNA_Ecto-sp13_S_contig13741.2944.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13741:3686..4319- (Ectocarpus species13 EcNAP12_S_4_19m)
TGGGTAATCATTCCTCCCGAGCTCAAGACGCTCCCGGCCAAGCTGCTGCC
GCGGTTCGTAGACCTGAGGCGAGGAAAGGCGGCCGACGTCGTCAAGACTA
CGCCAGAGGACGGAGCCGCCGCCCTGTCGTCGGCGCTCTCGCCGAGCTGG
TTGCGGCGGCTGTATCGCACCCCCCGAGACCTCGAGGGAGACGAGTCGTC
GTCGTCGTCGAGCAGTAGCAGCAGCAGCAGCGATTCTGAGGATTCCGGTT
CCGAC
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