prot_Ecto-sp13_S_contig13741.2943.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig13741.2943.1
Unique Nameprot_Ecto-sp13_S_contig13741.2943.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length85
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13741.2943.1 vs. uniprot
Match: D8LBK0_ECTSI (Bromodomain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK0_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 1.700e-23
Identity = 57/86 (66.28%), Postives = 57/86 (66.28%), Query Frame = 0 
Query:    2 TAAAAGGAXXXXXXXXXLPLTVVAGA--EXXXXXXXXXXXXXXXXEQELAKKMQAGFARRDYCRNRPLGRDRYGNEYWRFAGDKNL 85
            T A AGGA         LPLTVVAGA  E                EQELAKKMQAGFARRDYCRNRPLGRDRYGNEYWRFAGDKNL
Sbjct: 1679 TTAVAGGAAGVLAGVAALPLTVVAGAGAEVNGEGDVETDVDSHVDEQELAKKMQAGFARRDYCRNRPLGRDRYGNEYWRFAGDKNL 1764
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BLAST of mRNA_Ecto-sp13_S_contig13741.2943.1 vs. uniprot
Match: A0A6H5KEI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEI4_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 1.490e-22
Identity = 69/84 (82.14%), Postives = 70/84 (83.33%), Query Frame = 0 
Query:    2 TAAAAGGAXXXXXXXXXLPLTVVAGAEXXXXXXXXXXXXXXXXEQELAKKMQAGFARRDYCRNRPLGRDRYGNEYWRFAGDKNL 85
            T A AGGA         LPLT VAG  XXXXXXXXXXXXXXXXEQELAKKMQAGFARRDYCRNRPLGRDR+GNEYWRFAGDKNL
Sbjct:  105 TTARAGGAAGVLAGVAALPLTAVAGXXXXXXXXXXXXXXXXXXEQELAKKMQAGFARRDYCRNRPLGRDRFGNEYWRFAGDKNL 188
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13741.2943.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBK0_ECTSI1.700e-2366.28Bromodomain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KEI4_9PHAE1.490e-2282.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..85
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..13
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..26
score: 0.635
NoneNo IPR availableTMHMMTMhelixcoord: 5..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13741contigEcto-sp13_S_contig13741:495..1324 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13741.2943.1mRNA_Ecto-sp13_S_contig13741.2943.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig13741 493..1324 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig13741.2943.1 ID=prot_Ecto-sp13_S_contig13741.2943.1|Name=mRNA_Ecto-sp13_S_contig13741.2943.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=85bp
KTAAAAGGAAGVLAGVAALPLTVVAGAEVNGEGDVEADVDSDVDEQELAK
KMQAGFARRDYCRNRPLGRDRYGNEYWRFAGDKNL
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