mRNA_Ecto-sp13_S_contig13741.2943.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13741.2943.1
Unique NamemRNA_Ecto-sp13_S_contig13741.2943.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13741.2943.1 vs. uniprot
Match: D8LBK0_ECTSI (Bromodomain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK0_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 1.700e-23
Identity = 57/86 (66.28%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:    4 TAAAAGGAXXXXXXXXXLPLTVVAGA--EXXXXXXXXXXXXXXXXEQELAKKMQAGFARRDYCRNRPLGRDRYGNEYWRFAGDKNL 255
            T A AGGA         LPLTVVAGA  E                EQELAKKMQAGFARRDYCRNRPLGRDRYGNEYWRFAGDKNL
Sbjct: 1679 TTAVAGGAAGVLAGVAALPLTVVAGAGAEVNGEGDVETDVDSHVDEQELAKKMQAGFARRDYCRNRPLGRDRYGNEYWRFAGDKNL 1764
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BLAST of mRNA_Ecto-sp13_S_contig13741.2943.1 vs. uniprot
Match: A0A6H5KEI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEI4_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 1.490e-22
Identity = 69/84 (82.14%), Postives = 70/84 (83.33%), Query Frame = 1 
Query:    4 TAAAAGGAXXXXXXXXXLPLTVVAGAEXXXXXXXXXXXXXXXXEQELAKKMQAGFARRDYCRNRPLGRDRYGNEYWRFAGDKNL 255
            T A AGGA         LPLT VAG  XXXXXXXXXXXXXXXXEQELAKKMQAGFARRDYCRNRPLGRDR+GNEYWRFAGDKNL
Sbjct:  105 TTARAGGAAGVLAGVAALPLTAVAGXXXXXXXXXXXXXXXXXXEQELAKKMQAGFARRDYCRNRPLGRDRFGNEYWRFAGDKNL 188
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13741.2943.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBK0_ECTSI1.700e-2366.28Bromodomain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KEI4_9PHAE1.490e-2282.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13741contigEcto-sp13_S_contig13741:493..1324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score103.2
Seed ortholog evalue6.1e-20
Seed eggNOG ortholog2880.D8LBK0
Model size259
KEGG koko:K10608,ko:K11658,ko:K11756,ko:K12035
KEGG Pathwayko04120,ko05206,map04120,map05206
Hectar predicted targeting categorysignal peptide
Exons2
EggNOG free text desc.chromatin remodeling
EggNOG OGsCOG5076@1,KOG1245@2759,KOG1474@2759,KOG2177@1,KOG2177@2759
EC2.3.2.27
Cds size255
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03021,ko03036,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462733.6615038-CDS-Ecto-sp13_S_contig13741:494..5901681462733.6615038-CDS-Ecto-sp13_S_contig13741:494..590Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13741 495..590 -
1681462733.6737444-CDS-Ecto-sp13_S_contig13741:1165..13241681462733.6737444-CDS-Ecto-sp13_S_contig13741:1165..1324Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13741 1166..1324 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13741.2943.1prot_Ecto-sp13_S_contig13741.2943.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13741 495..1324 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13741.2943.1

>prot_Ecto-sp13_S_contig13741.2943.1 ID=prot_Ecto-sp13_S_contig13741.2943.1|Name=mRNA_Ecto-sp13_S_contig13741.2943.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=85bp
KTAAAAGGAAGVLAGVAALPLTVVAGAEVNGEGDVEADVDSDVDEQELAK
KMQAGFARRDYCRNRPLGRDRYGNEYWRFAGDKNL
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mRNA from alignment at Ecto-sp13_S_contig13741:493..1324-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13741.2943.1 ID=mRNA_Ecto-sp13_S_contig13741.2943.1|Name=mRNA_Ecto-sp13_S_contig13741.2943.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=832bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13741:493..1324- (Ectocarpus species13 EcNAP12_S_4_19m)
AAAACCGCGGCGGCGGCAGGCGGCGCGGCCGGCGTGTTGGCGGGGGTCGC
GGCGCTGCCGCTGACGGTCGTGGCGGGGGCGGAGGTGAACGGCGAGGGGG
ATGTGGAGGCGGATGTTGACAGCGACGTCGACGAGCAAGAGCTTGCGAAG
AAAATGCAGGTACAACGCGGCTGTGTGTGTGTGTGTTTCGTTGCGTTCGG
CAAAGCGTGGAATCGCGCTTAACCAGGTGACGAACGAAACTTCGTTTCAA
GTCTTCGTGTGGCCGGGCGAAAAAGAACGGGAGCACGCTCTCTGGTTTAC
AATGCTCTTGCTCGCGGACTCTTTGTTGGTAGCAGCAGCAGCATCAGCAT
CACCAGCGGTGTGGTATGTATCAGAACAAATCGTTCATGAGCACAGGAAA
AAAACAAACTAGTTGGAGTGGTGCGGATGTGCAGGCTTGTGTTAAATGTA
CCAAGGAGGCACTGACCAGCAACTGGTGTACACCAGTCGCAGCGCCTATC
GCATCGGAGACAGCACACCTGATGTAGTACCTGGCATAGCCAAAACGTGA
AGACGCACCCCTGTGTTGTTTGTGTACCGCGGGGGGAGGGGTCTTTACTT
GTTTTTTTGTTCTTGAGTGGGAGGGAGAGAAGTCCTGTGCCGATCGTGGT
TCTGTTGACGTTCAAAATCGACGAAGGCGTTGCTCGTGTACCCCCATTTT
TTGTCGGCCTGTACCCCCTTTGTGTGTGTGGCAGGCTGGCTTCGCACGAC
GAGACTACTGCCGTAACCGCCCCCTCGGCAGAGATCGTTATGGCAACGAG
TACTGGCGGTTCGCGGGGGACAAGAACCTAGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13741:493..1324-

>mRNA_Ecto-sp13_S_contig13741.2943.1 ID=mRNA_Ecto-sp13_S_contig13741.2943.1|Name=mRNA_Ecto-sp13_S_contig13741.2943.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13741:493..1324- (Ectocarpus species13 EcNAP12_S_4_19m)
AAAACCGCGGCGGCGGCAGGCGGCGCGGCCGGCGTGTTGGCGGGGGTCGC
GGCGCTGCCGCTGACGGTCGTGGCGGGGGCGGAGGTGAACGGCGAGGGGG
ATGTGGAGGCGGATGTTGACAGCGACGTCGACGAGCAAGAGCTTGCGAAG
AAAATGCAGGCTGGCTTCGCACGACGAGACTACTGCCGTAACCGCCCCCT
CGGCAGAGATCGTTATGGCAACGAGTACTGGCGGTTCGCGGGGGACAAGA
ACCTA
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