mRNA_Ecto-sp13_S_contig1374.2940.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1374.2940.1 vs. uniprot
Match: D7FWD2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWD2_ECTSI) HSP 1 Score: 542 bits (1397), Expect = 4.930e-190 Identity = 310/377 (82.23%), Postives = 318/377 (84.35%), Query Frame = 3
Query: 78 MFFDLNVPVLRSSVERDRSALLSQLFEHGYDCVALNTIVYGRLPKQHRCTIERIHFDPEAASAVCSRXXXXXXTFREPSLLRATARGGGAAAPGHGATAESGPDQVSRLTVVLESPADAQSLTAGSEALQSYDVVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFNINKKNTDAALSRGAVFEVTYSQAIQNSSNRRFLLANCEALLTFTRGRGILLASGAETWLNCRSPHDVANLGQLLGLSQEQSLRAVSDTPLAVLRRAEARKGRRETARGITLRPCLVACGCFVACRCLFRGATVSGGDDPAPAELLESLQIPKEFYLPEAAAVVGPQGENKGNSGGQGADVEXXXXXXXXXXX-GGFLSFGTSGQMDVDP 1205
MFFDLNVPVLRSSVERDRSALLSQLFEHGYDCVALNTI+YGRLPKQHRCT+ERIHFDPEAASAV SRXXXXXX AAPGHGATA SGPDQVSRLTVVLESPADAQSLTAGSEALQSYDVVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFNINKKNTDAALSRGAVFEV+YSQAIQNSSNRRFLL+NCEAL+TFTRGRGILLASGAETWLNCRSPHDVANLGQLLGLSQEQSLRAVSDTPLAVLRRAEARKGR FRGATVSGGDDPAPA+LLESLQIPKEFYLPEAAAVVGPQG +K XXXXXXXXXX GGFLSFGTS +MDVDP
Sbjct: 1 MFFDLNVPVLRSSVERDRSALLSQLFEHGYDCVALNTIIYGRLPKQHRCTVERIHFDPEAASAVGSRXXXXXXXXXXXXXXXXXXXXXXXAAPGHGATAASGPDQVSRLTVVLESPADAQSLTAGSEALQSYDVVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFNINKKNTDAALSRGAVFEVSYSQAIQNSSNRRFLLSNCEALVTFTRGRGILLASGAETWLNCRSPHDVANLGQLLGLSQEQSLRAVSDTPLAVLRRAEARKGR-------------------------FRGATVSGGDDPAPAQLLESLQIPKEFYLPEAAAVVGPQGGSKXXXXXXXXXXXXXXXXXXXXXEDGGFLSFGTSAEMDVDP 352
BLAST of mRNA_Ecto-sp13_S_contig1374.2940.1 vs. uniprot
Match: A0A1Y1II42_KLENI (Ribonuclease n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1II42_KLENI) HSP 1 Score: 138 bits (347), Expect = 1.210e-32 Identity = 99/277 (35.74%), Postives = 142/277 (51.26%), Query Frame = 3
Query: 78 MFFDLNVPVLRSSVERDRSALLSQLFEHGYDCVALNTIVYGRL-PKQHRCTIERIHFDPEAASAVCSRXXXXXXTFREPSLLRATARGGGAAAPGHGATAESGPDQVSRLTVVLESPADAQSLTAGSEALQSYDVVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFNINKKNTDAALSRGAVFEVTYSQAIQNSSNRRFLLANCEALLTFTRGRGILLASGAETWLNCRSPHDVANLGQLLGLSQEQSLRAVSDTPLAVLRRAEARKGRRETARG 905
MFFDLN+P + E R A+++Q GYD VA N V GR+ C + + + A+A R + A G PG Q++R+T+V+E + A SL++ + L SYD+VA P R+F C +VD+I+L G R F +++ AAL RG FE++YS Q+ +RR LL N +AL+ TRG+ I+L+SGA + R+P+DV NL LLGL+ + A S AV+ R E R R T RG
Sbjct: 1 MFFDLNLPNDGKN-ELLRRAMVAQAICSGYDGVAHNHTVAGRMMTSDDTCKSQPVKLESAIAAAA-----GVAGAARSLQSIGADRSG-----PGF--------QQLNRITMVIEDASQASSLSSANPVLASYDIVAVEPTNARTFMQACTSLEVDLIALSLGSRRSFRFRQQDVRAALDRGLHFEISYSGLFQDGQSRRQLLTNAQALVKMTRGKNIILSSGASQTTDLRNPYDVRNLATLLGLNFAHAKAATSQRATAVILRGETR---RSTLRG 255
BLAST of mRNA_Ecto-sp13_S_contig1374.2940.1 vs. uniprot
Match: A0A7C9ES22_OPUST (Uncharacterized protein (Fragment) n=2 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9ES22_OPUST) HSP 1 Score: 136 bits (343), Expect = 2.900e-32 Identity = 87/261 (33.33%), Postives = 141/261 (54.02%), Query Frame = 3
Query: 81 FFDLNVPVL--------RSSVERDRSALLSQLFEHGYDCVALNTIVYGRLPKQHRCTIERIHFDPEAASAVCSRXXXXXXTFREPSLLRATARGGGAAAPGHGATAESGPDQVSRLTVVLESPADAQSLTAGSEALQSYDVVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFNINKKNTDAALSRGAVFEVTYSQAIQNSSNRRFLLANCEALLTFTRGRGILLASGAETWLNCRSPHDVANLGQLLGLSQEQSLRAVS 839
FFDLN+P L +S+ +++R L+ + E GY +A N + G + + RC+I P ++ + +F L G AP Q +RLTV++E+ A A +L +G+ L+SYD+VA P Q F+ C+ S V++IS+ ++LPF + AA++RG FE+TYS +++ RR L+AN + L+ +TRG+ ++++S A + L R P+DV+NL LLGLS E + A+S
Sbjct: 27 FFDLNIPYLEGDKSIPDKSAKKQNRLRLIIKAMELGYAGIAYNRTIKGAMSESDRCSIPPF---PLSSLLNAAPSLSFAVSFHRRLL------GVPPTAPFR---------QYTRLTVIVETSAQASALNSGNPVLKSYDLVAVRPLNQNCFDHACQSSQVELISINFAEKLPFRLKLPMVKAAIARGVTFEITYSSLMEDVQARRQLIANAKLLVEWTRGKNLIISSAASSVLALRGPNDVSNLSSLLGLSNEHAKAAIS 269
BLAST of mRNA_Ecto-sp13_S_contig1374.2940.1 vs. uniprot
Match: A0A1S3XHS6_TOBAC (uncharacterized protein LOC107765292 n=5 Tax=Nicotiana TaxID=4085 RepID=A0A1S3XHS6_TOBAC) HSP 1 Score: 140 bits (353), Expect = 4.820e-32 Identity = 93/281 (33.10%), Postives = 140/281 (49.82%), Query Frame = 3
Query: 81 FFDLNVPVLRS--------SVERDRSALLSQLFEHGYDCVALNTIVYGRLPKQHRCTIER------IHFDPEAASAVCSRXXXXXXTFREPSLLRATARGGGAAAPGHGATAESGPDQVSRLTVVLESPADAQSLTAGSEALQSYDVVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFNINKKNTDAALSRGAVFEVTYSQAIQNSSNRRFLLANCEALLTFTRGRGILLASGAETWLNCRSPHDVANLGQLLGLSQEQSLRAVSDTPLAVLRRAEARK 881
FFDLN+P S +++ R L + E GY +A N + G + + RC+I + P AS+V R P Q +RLTV+++S A A +L +G+ L+SYDVVA P Q +FE C+ S+VD+I++ ++LPF + + AA+ RG FE+TYS I +S RR +++N + L+ +TRG+ +L +S A + R PHDVANL LLGL E++ A+S VL A +K
Sbjct: 3 FFDLNIPYYESDRNITNKTALKATRLKLTIKAMELGYTGIAYNRTIKGVMSESDRCSIPLFPVSSILKLAPSLASSVEFRRKLLNVPVSSPFR------------------------QYTRLTVMVDSSAQASALNSGNPILKSYDVVAVRPLNQLAFEQACQVSEVDIIAIDFSEKLPFRLKQSMVKAAIQRGVYFEITYSSLILDSQMRRQMISNAKLLVDWTRGKNLLFSSAAPSVTELRGPHDVANLASLLGLQLERAKAALSKNCRTVLTNALRKK 259
BLAST of mRNA_Ecto-sp13_S_contig1374.2940.1 vs. uniprot
Match: A0A7J7BZZ2_TRIWF (Polymerase/histidinol phosphatase-like putative isoform 1 n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7BZZ2_TRIWF) HSP 1 Score: 139 bits (349), Expect = 1.750e-31 Identity = 91/269 (33.83%), Postives = 143/269 (53.16%), Query Frame = 3
Query: 81 FFDLNVPVLRSSV--ERDRSALLSQLFEHGYDCVALNTIVYGRLPKQHRCTIERIHFDPEAASAVCSRXXXXXXTFREPSLLRATARGGGAAAPGHGATAESGPDQVSRLTVVLESPADAQSLTAGSEALQSYDVVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFNINKKNTDAALSRGAVFEVTYSQAIQNSSNRRFLLANCEALLTFTRGRGILLASGAETWLNCRSPHDVANLGQLLGLSQEQSLRAVSDTPLAVLRRAEARK 881
FFDLNVP S+ + R L+ + E GY +A N + G + K+ +CTI+ ++ AS V LL G S Q +R+TV +S A AQ L +G+ L++YD+VA P Q +F+ C+ S+VD+I++ +LP+ + + AA+ RG FE+TYS I + RR ++++ + L+ +TRG+ I+L+SGA + R PHD ANL LLGLS E++ A+S+ ++ +A RK
Sbjct: 3 FFDLNVPYQESNPNSKTTRIRLVIKAMELGYTGIAHNRTMRGVMSKRDQCTIQLLN----VASLVKVAPYLASSVQLHRDLL--------------GVPRTSPFRQYTRITVYADSVAQAQVLNSGNPILKTYDLVAVRPLNQSAFDYACEKSEVDIIAIDFSDKLPYRMKQPMVKAAMERGVYFEITYSDLIMDVKKRRQMISSAKLLVDWTRGKNIILSSGAPSVNELRGPHDAANLSSLLGLSMERAKAAISNNCRTLVTKALRRK 253
BLAST of mRNA_Ecto-sp13_S_contig1374.2940.1 vs. uniprot
Match: A0A484N9S6_9ASTE (Uncharacterized protein n=2 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484N9S6_9ASTE) HSP 1 Score: 137 bits (345), Expect = 3.760e-31 Identity = 93/281 (33.10%), Postives = 140/281 (49.82%), Query Frame = 3
Query: 81 FFDLNVPVLRS--------SVERDRSALLSQLFEHGYDCVALNTIVYGRLPKQHRCTIER------IHFDPEAASAVCSRXXXXXXTFREPSLLRATARGGGAAAPGHGATAESGPDQVSRLTVVLESPADAQSLTAGSEALQSYDVVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFNINKKNTDAALSRGAVFEVTYSQAIQNSSNRRFLLANCEALLTFTRGRGILLASGAETWLNCRSPHDVANLGQLLGLSQEQSLRAVSDTPLAVLRRAEARK 881
FFDLN+P L S S + R LL + E GY VA N + G + + RC+I + P +SAV + T + R Q +RLTV+++SPA A L +G+ +SYDVVA +P Q +F+ C+ S VDVI++ +++ F + + AA+ RG FE+TYS + ++ RR ++ N + L+ +TRGR I+L S A + R PHDV NL LLGLS E + A+S ++ +A +K
Sbjct: 3 FFDLNIPYLESDRLVIDKKSAKSMRLKLLIKAMELGYTGVAYNRTIKGVMSELDRCSIPPFPLSSILKLSPSISSAV--KLHRDLLTVPVSAPFR----------------------QYTRLTVMVDSPAQASVLNSGNPITKSYDVVAVMPLNQNAFDQACQISQVDVITIDFSQKMLFRLKQPMVKAAVQRGIYFEITYSSLLTDAQARRQMIPNAKLLVDWTRGRNIILTSAAPSVTELRGPHDVVNLSSLLGLSTEHAKSALSKNCRNLIEKASRKK 259
BLAST of mRNA_Ecto-sp13_S_contig1374.2940.1 vs. uniprot
Match: A0A1D1ZX50_AUXPR (Uncharacterized protein (Fragment) n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D1ZX50_AUXPR) HSP 1 Score: 130 bits (326), Expect = 2.320e-30 Identity = 95/275 (34.55%), Postives = 134/275 (48.73%), Query Frame = 3
Query: 72 ATMFFDLNVP--VLRSSVERDRSALLSQLFEHGYDCVALNTIVYGRLPKQHRCTIERIHFDPEAASAVCSRXXXXXXTFREPSLLRATARGGGAAAPGHGATAESGPDQVSRLTVVLESPADAQSLTAGSEALQSYDVVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFNINKKNTDAALSRGAVFEVTYSQAIQNSSNRRFLLANCEALLTFTRGRGILLASGAETWLNCRSPHDVANLGQLLGLSQEQSLRAVSDTPLAVLRRAEARKGRR 890
AT + DL+ +L R+R A +L GY A+ + V L H+C HF+P ++ + T L T +Q+SRLTVV E AQ +YD++A P +++ + C VD+ISL KRL + AA++RG FEV YS +++S+ R+ ++N AL+ TRGRGILL+SGA T L+ R P DV NLG LLGL+Q+Q+ V+ P VLR A ARK R
Sbjct: 17 ATGYSDLSCSEVLLEHGTRRERLATCLRL---GYGVAAICSKVVAPLDATHKC-----HFEPMDPLSLRNAHSKAKTTLNAVLQLGRTL---------------GQLEQLSRLTVVAEDGPQAQLACTFEAVTSTYDILAIQPQNEKTLALACTSLPVDIISLDLTKRLAYRFKPSTIAAAMARGVYFEVCYSALLRDSTTRKQFISNVAALVRETRGRGILLSSGARTVLDLRRPVDVVNLGGLLGLTQQQAQHTVTRAPQEVLRHARARKAHR 268
BLAST of mRNA_Ecto-sp13_S_contig1374.2940.1 vs. uniprot
Match: A0A7S2WPG3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WPG3_9STRA) HSP 1 Score: 128 bits (322), Expect = 4.870e-30 Identity = 86/246 (34.96%), Postives = 129/246 (52.44%), Query Frame = 3
Query: 141 LSQLFEHGYDCVALNTIVYGRLPKQHRCTIERIHFDPEAASAVCSRXXXXXXTFREPSLLRATARGGGAAAPGHGATAESGPDQVSRLTVVLESPADAQSLTAGSEALQSYDVVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFNINKKNTDAALSRGAVFEVTYSQAIQNSSNRRFLLANCEALLTFTRGRGILLASGAETWLNCRSPHDVANLGQLLGLSQEQSLRAVSDTPLAVLRRAEAR 878
L L E GY VA I+YG+L K C I+ + E A+ T P L + A+ GG G ++RLT+V E P D S+ + A ++Y+VVA P QR++E+ C+ VDV+SL +RL F+I +K DAAL +GA FE+ Y QA+++ S RFL++ L TRG+ ++++SG+ + RSPHDV NL LL +++ S + + P + AR
Sbjct: 33 LETLLESGYTTVAATRIIYGKLKKTDGCDIDPRRWMEELATGSAQS------TTCLPILGPSAAQVGG------------GLTLLTRLTLVPEEPDDVPSIQSHKIA-ETYNVVAIQPTSQRTWELACEQHGVDVVSLDCTQRLRFHITRKQVDAALEKGAKFELLYGQAMKDPSAFRFLVSTARQLTHLTRGKHVIMSSGSSDAVYLRSPHDVLNLAALLDITRSGSFGCLREEPAWAVAHGRAR 259
BLAST of mRNA_Ecto-sp13_S_contig1374.2940.1 vs. uniprot
Match: UPI001CC4615C (protein GAMETOPHYTE DEFECTIVE 1 n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC4615C) HSP 1 Score: 134 bits (337), Expect = 5.530e-30 Identity = 93/278 (33.45%), Postives = 138/278 (49.64%), Query Frame = 3
Query: 81 FFDLNVPVL-----------RSSVERDRSALLSQLFEHGYDCVALNTIVYGRLPKQHRCTIERIHFDPEAASAVCSRXXXXXXTFREPSLLRATARGGGAAAPGHGATAESGPDQVSRLTVVLESPADAQSLTAGSEALQSYDVVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFNINKKNTDAALSRGAVFEVTYSQAIQNSSNRRFLLANCEALLTFTRGRGILLASGAETWLNCRSPHDVANLGQLLGLSQEQSLRAVSDTPLAVLRRAEARK 881
FFDLNVP L +S + R + + E GY VA N + G + RCTI P ++ + F L G S Q +RLTVV+++P A +L +G+ L+SYD+VA P Q +FE C S+VD+I++ +RLPF + AA+ RG FE+ YS I + RR L++N + L+ +TRG+ ++++S A T R P+DVANL LLGLS E++ A+S A++ A +K
Sbjct: 3 FFDLNVPYLEGGGSEKSISDKSGKKSARLKFVVKAMEMGYTGVAYNRSMTGIMSDSDRCTISLF---PLSSLLKAAPTLSTSVKFHREIL---------------GVPLNSPFRQYTRLTVVVDTPRQADALNSGNPVLKSYDLVAVRPLNQLAFERACNVSEVDIIAIDFSQRLPFRLKLPLVKAAMERGIYFEIVYSHLISDVQARRQLISNAKLLVDWTRGKNLIVSSAALTVNELRGPYDVANLSMLLGLSMERAKEAISKNCRALVANALKKK 262
BLAST of mRNA_Ecto-sp13_S_contig1374.2940.1 vs. uniprot
Match: A0A8J9ZMY5_BRALA (RPP30 protein n=2 Tax=Branchiostoma TaxID=7737 RepID=A0A8J9ZMY5_BRALA) HSP 1 Score: 127 bits (320), Expect = 6.440e-30 Identity = 66/163 (40.49%), Postives = 104/163 (63.80%), Query Frame = 3
Query: 390 QVSRLTVVLESPADAQSLTAGSEALQSYDVVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFNINKKNTDAALSRGAVFEVTYSQAIQNSSNRRFLLANCEALLTFTRGRGILLASGAETWLNCRSPHDVANLGQLLGLSQEQSLRAVSDTPLAVLRRAEAR 878
Q++RLT ++E+ +TA + + +YD++A P + FE CK +VD+I+L ++LPF + A++RGA FE+ YS AI++S+ RR++++N L+TF +G+ I+L+S AE + R PHDVANLG L G++Q Q+ AVS +VL AE R
Sbjct: 56 QLTRLTAIIETHEQKYKVTANNPTITAYDILAVQPLNLKMFEAACKTLEVDIITLDMTQKLPFLLKLTPIKRAIARGAYFEIVYSPAIRDSTLRRYIISNATDLMTFCKGKNIILSSQAEKAIELRGPHDVANLGVLFGMNQVQAKDAVSINCRSVLLHAETR 218 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1374.2940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1374.2940.1 >prot_Ecto-sp13_S_contig1374.2940.1 ID=prot_Ecto-sp13_S_contig1374.2940.1|Name=mRNA_Ecto-sp13_S_contig1374.2940.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=377bp MFFDLNVPVLRSSVERDRSALLSQLFEHGYDCVALNTIVYGRLPKQHRCTback to top mRNA from alignment at Ecto-sp13_S_contig1374:7038..14113- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1374.2940.1 ID=mRNA_Ecto-sp13_S_contig1374.2940.1|Name=mRNA_Ecto-sp13_S_contig1374.2940.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7076bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1374:7038..14113- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1374:7038..14113- >mRNA_Ecto-sp13_S_contig1374.2940.1 ID=mRNA_Ecto-sp13_S_contig1374.2940.1|Name=mRNA_Ecto-sp13_S_contig1374.2940.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1131bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1374:7038..14113- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |