mRNA_Ecto-sp13_S_contig13734.2936.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13734.2936.1
Unique NamemRNA_Ecto-sp13_S_contig13734.2936.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13734.2936.1 vs. uniprot
Match: D7FKY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKY1_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 1.450e-44
Identity = 84/97 (86.60%), Postives = 89/97 (91.75%), Query Frame = 1 
Query:   10 HQRHSNKQRKKILALQLTNNKVLSKAASDKERSARTEGDLLANFDTAEDTIASLTDTVGEQQLAAAMESERFDQTLRQLDNELRTSRQAARAELEYC 300
            HQRHSNKQRKKILALQLTNNKVLS AASDKERSAR EGDLLA  DTAEDTIASLTDTV EQQLAAA ESERF+Q  RQLDN+L+TSR+AARAELE+C
Sbjct:   13 HQRHSNKQRKKILALQLTNNKVLSTAASDKERSARREGDLLAKVDTAEDTIASLTDTVAEQQLAAATESERFEQAQRQLDNKLKTSRRAARAELEFC 109
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BLAST of mRNA_Ecto-sp13_S_contig13734.2936.1 vs. uniprot
Match: A0A6H5JBW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBW0_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 4.070e-44
Identity = 89/100 (89.00%), Postives = 93/100 (93.00%), Query Frame = 1 
Query:    1 MPHHQRHSNKQRKKILALQLTNNKVLSKAASDKERSARTEGDLLANFDTAEDTIASLTDTVGEQQLAAAMESERFDQTLRQLDNELRTSRQAARAELEYC 300
            +P+HQRHSNKQRKKILALQLTNNKVLS AASDKERSARTEG+LLA  DTAE TIASLTDTV EQQLAAAMESERFDQ LRQLDNEL+TSRQAARAELE C
Sbjct:  119 VPYHQRHSNKQRKKILALQLTNNKVLSTAASDKERSARTEGELLAKLDTAEYTIASLTDTVAEQQLAAAMESERFDQALRQLDNELQTSRQAARAELELC 218
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BLAST of mRNA_Ecto-sp13_S_contig13734.2936.1 vs. uniprot
Match: D7G3D5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3D5_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 3.240e-40
Identity = 85/95 (89.47%), Postives = 88/95 (92.63%), Query Frame = 1 
Query:   16 RHSNKQRKKILALQLTNNKVLSKAASDKERSARTEGDLLANFDTAEDTIASLTDTVGEQQLAAAMESERFDQTLRQLDNELRTSRQAARAELEYC 300
            RHS KQRKKILALQLTNNKVLS AASDKERSARTEGDLLA  DTAEDTIA LTDTV EQQLAAAMESERFDQ LRQLDNEL+TSR+AARAELE+C
Sbjct:  229 RHSKKQRKKILALQLTNNKVLSTAASDKERSARTEGDLLAKLDTAEDTIAFLTDTVAEQQLAAAMESERFDQALRQLDNELKTSRRAARAELEFC 323
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BLAST of mRNA_Ecto-sp13_S_contig13734.2936.1 vs. uniprot
Match: D7FRE6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE6_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 1.300e-38
Identity = 82/95 (86.32%), Postives = 86/95 (90.53%), Query Frame = 1 
Query:   16 RHSNKQRKKILALQLTNNKVLSKAASDKERSARTEGDLLANFDTAEDTIASLTDTVGEQQLAAAMESERFDQTLRQLDNELRTSRQAARAELEYC 300
            RHSNKQRKKILALQLTNNKVLS AASDKERSAR EGDL A  DTA DTIASLTDTV EQQ+AAAME ERF+Q LRQLDNEL+TSRQAARAELE+C
Sbjct:  213 RHSNKQRKKILALQLTNNKVLSTAASDKERSARREGDLRAKLDTAGDTIASLTDTVAEQQMAAAMECERFEQALRQLDNELKTSRQAARAELEFC 307
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BLAST of mRNA_Ecto-sp13_S_contig13734.2936.1 vs. uniprot
Match: D7G5D2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D2_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 7.470e-11
Identity = 43/82 (52.44%), Postives = 56/82 (68.29%), Query Frame = 1 
Query:   34 RKKILALQLTNNKVLSKAASDKERSARTEGDLLANFDTAEDTIASLTDTVGEQQLAAAMESERFDQTLRQLDNELRTSRQAA 279
            R+++ AL+   + V   AASD+E SARTEGD + N  TAE TIA+LT+TVGEQQLA   ESER D +LR +++    S Q A
Sbjct:   87 REEVEALRAIIDHVEETAASDRETSARTEGDPVPNLSTAEGTIAALTETVGEQQLATQRESERSDLSLRLVESNREASLQEA 168
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13734.2936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FKY1_ECTSI1.450e-4486.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBW0_9PHAE4.070e-4489.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3D5_ECTSI3.240e-4089.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRE6_ECTSI1.300e-3886.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5D2_ECTSI7.470e-1152.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13734contigEcto-sp13_S_contig13734:2827..3126 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size300
Hectar predicted targeting categoryother localisation
Exons1
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462733.121074-CDS-Ecto-sp13_S_contig13734:2826..31261681462733.121074-CDS-Ecto-sp13_S_contig13734:2826..3126Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13734 2827..3126 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13734.2936.1prot_Ecto-sp13_S_contig13734.2936.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13734 2827..3126 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13734.2936.1

>prot_Ecto-sp13_S_contig13734.2936.1 ID=prot_Ecto-sp13_S_contig13734.2936.1|Name=mRNA_Ecto-sp13_S_contig13734.2936.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp
MPHHQRHSNKQRKKILALQLTNNKVLSKAASDKERSARTEGDLLANFDTA
EDTIASLTDTVGEQQLAAAMESERFDQTLRQLDNELRTSRQAARAELEYC
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mRNA from alignment at Ecto-sp13_S_contig13734:2827..3126-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13734.2936.1 ID=mRNA_Ecto-sp13_S_contig13734.2936.1|Name=mRNA_Ecto-sp13_S_contig13734.2936.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13734:2827..3126- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTCACCACCAGAGGCACTCAAACAAACAGCGCAAGAAAATTCTTGC
GCTGCAGCTGACCAATAATAAGGTCCTGTCGAAGGCCGCTTCTGATAAGG
AGAGGTCGGCCCGGACGGAGGGCGACCTCCTTGCGAACTTCGACACCGCC
GAGGACACCATCGCCTCCCTGACCGACACGGTGGGCGAGCAGCAGCTGGC
CGCCGCGATGGAGTCCGAGCGGTTTGACCAAACCCTGCGCCAGCTCGACA
ACGAGCTCAGGACTTCGAGGCAAGCCGCTCGAGCGGAGCTCGAGTATTGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13734:2827..3126-

>mRNA_Ecto-sp13_S_contig13734.2936.1 ID=mRNA_Ecto-sp13_S_contig13734.2936.1|Name=mRNA_Ecto-sp13_S_contig13734.2936.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13734:2827..3126- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTCACCACCAGAGGCACTCAAACAAACAGCGCAAGAAAATTCTTGC
GCTGCAGCTGACCAATAATAAGGTCCTGTCGAAGGCCGCTTCTGATAAGG
AGAGGTCGGCCCGGACGGAGGGCGACCTCCTTGCGAACTTCGACACCGCC
GAGGACACCATCGCCTCCCTGACCGACACGGTGGGCGAGCAGCAGCTGGC
CGCCGCGATGGAGTCCGAGCGGTTTGACCAAACCCTGCGCCAGCTCGACA
ACGAGCTCAGGACTTCGAGGCAAGCCGCTCGAGCGGAGCTCGAGTATTGT
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