mRNA_Ecto-sp13_S_contig13733.2933.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13733.2933.1
Unique NamemRNA_Ecto-sp13_S_contig13733.2933.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13733.2933.1 vs. uniprot
Match: D7FSV0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSV0_ECTSI)

HSP 1 Score: 288 bits (737), Expect = 2.830e-88
Identity = 135/139 (97.12%), Postives = 137/139 (98.56%), Query Frame = 1 
Query:    1 ATQHRALVRYRDLPDRSRSFVVFVSHAWMRPHTTPSFAHPDTSSRGGEKYRLIAEAGDRIRAHLPPDVRVLLWIDYSCVDQDSTRRSKATMRGMREYMRRCDAILTVYPGDAADNGEEFLPNRFVKSCAWAGSYKSLAH 417
            ++  RALVRYRDLPDRSRSFVVFVSHAWMRPHTTPSFAHPDTSSRGGEKYRLIAEAGDRIRAHLPPDVRVLLWIDYSCVDQDSTRRSKATMRGMREYMRRCDAILTVYPGDAADNGEEFLPNRFVKSCAWAGSYKSLAH
Sbjct:  512 SSDRRALVRYRDLPDRSRSFVVFVSHAWMRPHTTPSFAHPDTSSRGGEKYRLIAEAGDRIRAHLPPDVRVLLWIDYSCVDQDSTRRSKATMRGMREYMRRCDAILTVYPGDAADNGEEFLPNRFVKSCAWAGSYKSLAH 650
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BLAST of mRNA_Ecto-sp13_S_contig13733.2933.1 vs. uniprot
Match: A0A7S2IEM7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2IEM7_9EUKA)

HSP 1 Score: 70.5 bits (171), Expect = 2.130e-10
Identity = 42/116 (36.21%), Postives = 64/116 (55.17%), Query Frame = 1 
Query:   43 DRSRSFVVFVSHAWMRPHTTPSFAHPDTSSRGGEKYRLIAEAGDRIRAHLPP---DVRVLLWIDYSCVDQDSTRRSKATMRGMREYMRRCDAILTVYPGDAADNGEEFLPNRFVKS 381
            DRS +  +FVSH W+RP   P+  HPD      +K++LI EA +R+R    P    +++ LW+D++C+DQDS+   +   R M   +  CD +LT  P    D+ E  LP +   S
Sbjct:   72 DRSTTAFIFVSHRWLRPRQGPA-GHPDDFDH--QKHKLIVEACERLRGPRAPIAEHMQIALWVDFACLDQDSSPAQELEER-MTTLIGVCDLLLT--PVVDPDHEEWSLPLKITGS 181
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BLAST of mRNA_Ecto-sp13_S_contig13733.2933.1 vs. uniprot
Match: A0A7S1DLE0_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DLE0_HEMAN)

HSP 1 Score: 58.9 bits (141), Expect = 2.950e-6
Identity = 31/92 (33.70%), Postives = 51/92 (55.43%), Query Frame = 1 
Query:   52 RSFVVFVSHAWMRPHTTPSFAHPDTSSRGGEKYRLIAEAGDRI--RAHLPPDV-RVLLWIDYSCVDQDSTRRSKATMRGMREYMRRCDAILT 318
            R F +FVSH W++P       HPD  + G  KY+L+ +  + +  R  +P D  +++LWIDY+C++QD+   +      M   +  CD +LT
Sbjct:   89 RLFRIFVSHRWLQPEKP----HPD--AEGNPKYKLLLKCIEDMQERGWIPSDDDKIVLWIDYACINQDAKDPAAELNDNMLRIVGMCDMVLT 174
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BLAST of mRNA_Ecto-sp13_S_contig13733.2933.1 vs. uniprot
Match: A0A7S0U0U2_HEMAN (Hypothetical protein (Fragment) n=3 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0U0U2_HEMAN)

HSP 1 Score: 58.2 bits (139), Expect = 6.470e-6
Identity = 32/92 (34.78%), Postives = 51/92 (55.43%), Query Frame = 1 
Query:   52 RSFVVFVSHAWMRPHTTPSFAHPDTSSRGGEKYRLIAEAGDRI--RAHLPPDV-RVLLWIDYSCVDQDSTRRSKATMRGMREYMRRCDAILT 318
            R F +FVSH W++P       HPD +  G  KY+LI +  + +  R  +P D  +++LWIDY+C++QD+   +      M   +  CD +LT
Sbjct:  117 RLFRIFVSHRWLQPEKP----HPDAN--GHPKYQLILKCIEDMQKRGWVPSDDDKIVLWIDYACINQDAKDPAAELNDNMLRIVGMCDMVLT 202
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BLAST of mRNA_Ecto-sp13_S_contig13733.2933.1 vs. uniprot
Match: A0A7S3V685_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V685_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 7.950e-6
Identity = 33/108 (30.56%), Postives = 57/108 (52.78%), Query Frame = 1 
Query:   19 LVRYRDLP--DRSRSFVVFVSHAWMRPHTTPSFAHPDTSSRGGEKYRLIAEAGDRIRAHLPPDVRVLLWIDYSCVDQDSTRRSKATMRGMREYMRRCDAILT-VYPGD 333
            LVRYRDL   DR+++ +VF+SH W+   +      PD+      K+++     D ++      VR+L+W+DYSC++Q       + +  +  Y+ R   IL+ + P D
Sbjct:   78 LVRYRDLEEVDRAQTMIVFISHRWLNTDSDK----PDSDDNF--KFKITKLGLDMLKRQSGGGVRMLVWLDYSCMNQLDRLLMASGIASLPAYVERSSVILSPILPND 179
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13733.2933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FSV0_ECTSI2.830e-8897.12Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2IEM7_9EUKA2.130e-1036.21Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A7S1DLE0_HEMAN2.950e-633.70Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
A0A7S0U0U2_HEMAN6.470e-634.78Hypothetical protein (Fragment) n=3 Tax=Hemiselmis... [more]
A0A7S3V685_9STRA7.950e-630.56Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13733contigEcto-sp13_S_contig13733:56..3625 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size851
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-19_001860.1
Cds size402
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13733.2933.1prot_Ecto-sp13_S_contig13733.2933.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13733 56..1825 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462732.9191298-CDS-Ecto-sp13_S_contig13733:55..1901681462732.9191298-CDS-Ecto-sp13_S_contig13733:55..190Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13733 56..190 -
1681462732.9301834-CDS-Ecto-sp13_S_contig13733:887..9721681462732.9301834-CDS-Ecto-sp13_S_contig13733:887..972Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13733 888..972 -
1681462732.9400215-CDS-Ecto-sp13_S_contig13733:1230..13371681462732.9400215-CDS-Ecto-sp13_S_contig13733:1230..1337Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13733 1231..1337 -
1681462732.9488034-CDS-Ecto-sp13_S_contig13733:1750..18251681462732.9488034-CDS-Ecto-sp13_S_contig13733:1750..1825Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13733 1751..1825 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462732.9571545-UTR-Ecto-sp13_S_contig13733:1825..19391681462732.9571545-UTR-Ecto-sp13_S_contig13733:1825..1939Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13733 1826..1939 -
1681462732.9659274-UTR-Ecto-sp13_S_contig13733:2472..25641681462732.9659274-UTR-Ecto-sp13_S_contig13733:2472..2564Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13733 2473..2564 -
1681462732.9762926-UTR-Ecto-sp13_S_contig13733:3382..36251681462732.9762926-UTR-Ecto-sp13_S_contig13733:3382..3625Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13733 3383..3625 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13733.2933.1

>prot_Ecto-sp13_S_contig13733.2933.1 ID=prot_Ecto-sp13_S_contig13733.2933.1|Name=mRNA_Ecto-sp13_S_contig13733.2933.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=134bp
MLLGQTEPLPQDGFMFNFLVPKKKKASGAKASVGDRPHFLYGAHQRPHNG
RIDVVPRQSSRWFEEHHPEQGNFTHESDRDAIRAVLAKQTSTMAKRSAAI
AARYGTDPRRGRGSENRSGDRQHADDGEYGRPH*
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mRNA from alignment at Ecto-sp13_S_contig13733:56..3625-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13733.2933.1 ID=mRNA_Ecto-sp13_S_contig13733.2933.1|Name=mRNA_Ecto-sp13_S_contig13733.2933.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3570bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13733:56..3625- (Ectocarpus species13 EcNAP12_S_4_19m)
GCAACGCAACACAGGGCGTTGGTGCGATACCGAGACCTCCCCGACCGCAG
CCGATCGTTCGTGGTGTTCGTGTCCCACGCCTGGATGAGGCCGCACACCA
CCCCGTCCTTCGCTCACCCGGACACGTCTTCGAGGGGGGGAGAGAAGTAC
CGCCTCATCGCCGAGGCCGGGGACCGCATCAGGGCGCACCTCCCGCCGGA
CGTCCGCGTGCTGCTGTGGATCGACTACTCCTGCGTCGACCAGGTGTGTG
CTTGACCCTTGAGCAGCAGTGCCAAGGTTAATGTTTGGACCGCCCCACCG
TGCGTTTTTTTGAGAGTTTGAAACTGCTGTTGCGGCAATGTGAACCTTGG
CGCCGAGTCGTTGAAACAGTTACCTCCTGGAAAGGTTTACTTGGCGTCTT
GGTTGGATAGTTTTGCGAGAACATGTTGGTTGATGTTGGAACCCCGCCCT
TTTTTGTGACAGTGGCGTGCTGGAGCTCTTCAGAACTTTGAAGATCACGT
CCAAGAAGGTTGTTCGAATCTGGGGTTAATCCTGCTGTTGGTGATGTTTG
TTGTGTGTTGGTGGTGTTGGCGTCGGCGATTTGGTTTTATTGTGTGTTTA
TTTTCTGTCCGCGTTGTAAGGGGCGTTTGATGATGTTTTGTGGAGCCGTG
CCGTGTCGTGGTGCATACACCGGTCACGCTTCGCGGCTGCTGCTTGTCTG
GGCTCGCCATGGTGTTTTTCACGGCCGCCTGGCGTGCCTTTGCCCTCACC
TCCTGAGCCACTTGCGTTTTGACCGTTATTTTTTGTTGTCAAGCTTCGCC
GCTGACTAATGAGAGGAGGCTGCGCGTGTTCTTCTTGCGAACGTAGAGAA
CATGAGAGGATTGTTCGACTCATGAACAGGCTTTGGATTGGAGTGGTCAC
ACACACACCTCCCATACCCTGTACTGTCTCCTTTCTTTTCGTCCTTGCCT
TGACCCTTCGGCTCATTTTCAAGACATTCCTACTTGGGTTTTTTGTTGTT
GATTTTTCTTTCGCGTTTCACGCCCCCGCCCCTACAATGAAAATGAAACA
ATGAACAACAGGACTCGACACGAAGGAGCAAAGCTACGATGCGAGGCATG
AGGGAGTACATGCGGCGGTGTGACGCCATCCTGACGGTTTACCCCGGCGA
CGCGTGAGTTATTCGTTTTTTGTCATTTGCTGCCTGTTTTGCCGTGTATT
TCCACGTTGCCAAAGGTTGTTGTTTCTCCTTGCTGCTGTTGTTGGGTGCG
CCCGAACGCTTGCGTATATCGTGGTCGTTTGTTTCTTACTTCTAGGAGTG
GTATGTTTTTGTGCTCTATGTTTTGCTGGGTTCACGTGCCGGCCGTGTGT
GATGTGGTGAGTGTTTCGGGCGTTTGCCTTTCATGAGGAGAGGTTGTCTG
TCTCGCTATATGGCATTTCTCTCTCCCCACAGGGTACGAGAGTGGTGCTG
GGCTTGCGGGGCAGCGCCCGACACTGCTTGATAGACCTCAAGTCCTTTTT
CGCGAATGATTTAATTTGACAAGATTGAGCAACGCCGCTAACGTGTGGCT
TCATGGAGCAACATGCCATGACGTCACCCCCCTTGTCGCTCACGTGTGGC
TTCATAGAGCAAAACATGACGTCACTCCCCTTACCGCTACAACGCGCGTG
TGTGTGTGTGTGTGTGTGTGTTGTCCGTGGCTCCAGCGCCGACAACGGGG
AAGAGTTCCTCCCCAACCGCTTCGTCAAGTCGTGCGCCTGGGCCGGGAGC
TACAAGAGCTTGGCGCACTNNNNNNNNNNCGCGGATGGTGCCGGCTCGAG
ATGCTGCTGGGGCAGACGGAGCCGCTCCCTCAGGACGGCTTCATGTTCAA
CTTCCTCGTGCCCAAGAAGAAGAAGGTGGGAATATGTTACTTGCAGATGG
CGGCGTGGTTTTCATGGTCTTACTGGGAATCGCGTGGGATTTCCAGTCGA
GGGGTGTAGCCGGCGGCGTACTTGTATCACATGTTTCCACCGCGATCTGT
GTGGGACGGTAGCTGCAGGTGGCGGCGCGGCGTGTTTGTTATGTGTGTTG
TGGGGAACGGCCGTATTGTCGTCTCCTAGACTGTGGCGTGATTATTTCTG
CTGCTCTCTGAGTGGCGCAGAGGCTGGCTGCGTTCCATAGACGCCCCGGA
CGTGGCCTTTGGCATAGGCATCAATCCATCAAAATGTTGTGCAAATGCTG
CTTGATAGGTCCAGCGGCGCTCTCGCTCTTCAACCTACGATGCACGCCGA
CAATGATTTTTGGTCTGCTGTTTCTGTGTGACGAGCAGGCGTCTGGTGCT
AAGGCGTCCGTGGGAGACAGGCCCCACTTCCTTTACGGAGCGCACCAGCG
ACCGCACAACGGTCGCATCGATGTGGTGCCCCGCCAGTCCAGCAGGTACA
GCATTGTTAAAGAGACCCGATACAGTGCGACGGGGGACATCACATTTGTG
TCTGGTCGTTTTTGCTGATTTGTCCGTGAAACCTGCCGTTCTCAAACACA
CCACCTCTCCTGCTGTTCTCTAGTCTTTGGGGCCCAAATGACGGTCCGCG
TCCTGGTGCCTTGAAGCCAACCCCCTGCCCTTGATTTTTCTCGGAGACCC
TCTCACTCAGCAATGTTCCTCGTGTTTTGTTTTCACTTTTTGTCGTTGTT
AAGGTGGTTCGAGGAACACCACCCGGAGCAGGGGAACTTCACCCACGAGA
GCGACAGGGACGCCATCCGGGCAGTGCTGGCAAAGCAGGTTGGTCTTGTT
GTTGTGGTGGCTGTCGTCTACATTACAGAACAGACAACCCTCGGCCCTGG
TCATATCTCCAACGGGTATGCTAGTCTTTCAGTGATTTATGCATGTATTA
TCATGTCACCTTTTCTGTTCTCTGCTCAATACCTTGATGAAAGAACATTA
TTGGAGAAAAAACTCAACCAAGAGAGAAGGGAGAGTTGCGCACACGGCGG
CGGCGGCGGCCGGCAGCGGCTTTGTAAGATAAAGCTGGCGGTAGGGTAGT
CGGGTAGTCCGGTAGCACATCAAGGCGGGCAGCTCCGCAGCCGCGACATG
TCGGCTGACGGCGGGAACATCTGCTATGCTCGGCGTGTGGCATCGCGTAG
GTGGGCGCTTCAAAACGCAGGCGTGTTGCCAACGACGGCTCTTCTCGTTC
GTCCTTAGCACGAACACAGGAGCTTCCGAGGTTCCCCGGCGGTGATGGAT
CGCAGCTGTGCTGCACCCCCCGCCCCCCTTCAGCACATGTTTTAGTCCGC
GGCCCCCTTCCGCTGCAATGTCTGCTATCCCCCATGTTTTTATATCCCCC
ACCCTTTAACTAACGTTTGACTCCGCGACTTGCTCCGGCCGCATGTCTTG
TCTCATATCTTTGTACTGCATCCCCTACCCTTCACTCTGCGACTCCCCCG
CCGCATGTCTCTTTTGTTTTATTTTTTTCCCTTAGACGAGCACGATGGCC
AAGAGGAGCGCGGCGATCGCGGCCAGGTACGGCACAGACCCACGGAGAGG
CAGGGGGAGTGAAAATCGCAGCGGCGACAGGCAGCATGCGGACGACGGAG
AGTACGGGCGGCCGCACTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13733:56..3625-

>mRNA_Ecto-sp13_S_contig13733.2933.1 ID=mRNA_Ecto-sp13_S_contig13733.2933.1|Name=mRNA_Ecto-sp13_S_contig13733.2933.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=402bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13733:56..3625- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGCTGGGGCAGACGGAGCCGCTCCCTCAGGACGGCTTCATGTTCAA
CTTCCTCGTGCCCAAGAAGAAGAAGGCGTCTGGTGCTAAGGCGTCCGTGG
GAGACAGGCCCCACTTCCTTTACGGAGCGCACCAGCGACCGCACAACGGT
CGCATCGATGTGGTGCCCCGCCAGTCCAGCAGGTGGTTCGAGGAACACCA
CCCGGAGCAGGGGAACTTCACCCACGAGAGCGACAGGGACGCCATCCGGG
CAGTGCTGGCAAAGCAGACGAGCACGATGGCCAAGAGGAGCGCGGCGATC
GCGGCCAGGTACGGCACAGACCCACGGAGAGGCAGGGGGAGTGAAAATCG
CAGCGGCGACAGGCAGCATGCGGACGACGGAGAGTACGGGCGGCCGCACT
AA
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