mRNA_Ecto-sp13_S_contig1373.2931.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1373.2931.1 vs. uniprot
Match: A0A6H5K9Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Q8_9PHAE) HSP 1 Score: 698 bits (1801), Expect = 1.260e-249 Identity = 374/421 (88.84%), Postives = 389/421 (92.40%), Query Frame = 1
Query: 37 MMQRVVLLLFQIVPSASLLVSWTAARSRLSQKVQRSCTSVDSHTPGGGLSGGEPRDAMISELLQLFQGEFDNYDQVVADRKAGMTPGPGGGHEHIHCSLKRLDPAEVPGQVAAXXXXXXXXXXXXXXXXXXXXXXXXE-------RPLAVVAAKYYFNGDSNVVFRYRLYSFHACPPNTPGARGEAVMRLWRLLPHVEARLRTNSYDLTSFSWSDDDTNQREPGRGSDDVSSERCSKEGRTGDDVVERIFGCEIYWGRHQAGGEDEKTMPGGISGPGKRDTNGGAVPERGAGGXXXXXXXXXXVGGKSFVGLMGEDDGGTWVESQNVDGLEILVKDDLRLWPDRLWVNDRGFDRQGNFVYGNQRDVPYKMRRVTAGGPLEWTLGARHRTEKTYADKMSAIGVTPGQRVGPPVRVAAPAGTG 1278
MMQRVVLLL Q+VPSA LLVSWTA+RSRLSQKVQRSCTSVDSHTPGGGLSG EPRDAM+SELLQLFQGEFDNYDQVVADRKAGMTPGPGGGHEHIHCSLK+LDPAEVPGQVAAXXXXXXXXXXXXXXXXXXXXXXXX RPLAVVAAKYYFNGDSNVVFRYRLYSFHACPPNTPGARGEAVMRLWRLLPHVEARLR NSYDLTSFSWSDDD+NQREP RGSD+ S++RCSKEGRTG+DVVER+FGCEIYWGRHQAGGEDEK+MPGGISGPGK+D NGGAVPERGAG GGKSFVGLMG+DD GTWVESQNVDGLEILVKDDLRLWPD LWVNDRGFDR GNFVYGNQRDVPYKMRRVTAGGPLEWTLGARHRTEKTYA+KMSAIGVT GQR+ PPVRVAAPAGTG
Sbjct: 1 MMQRVVLLLLQVVPSAGLLVSWTASRSRLSQKVQRSCTSVDSHTPGGGLSGDEPRDAMVSELLQLFQGEFDNYDQVVADRKAGMTPGPGGGHEHIHCSLKQLDPAEVPGQVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPLAVVAAKYYFNGDSNVVFRYRLYSFHACPPNTPGARGEAVMRLWRLLPHVEARLRANSYDLTSFSWSDDDSNQREPSRGSDNASNDRCSKEGRTGNDVVERMFGCEIYWGRHQAGGEDEKSMPGGISGPGKQDANGGAVPERGAG------EDAAGGGGKSFVGLMGKDDSGTWVESQNVDGLEILVKDDLRLWPDSLWVNDRGFDRDGNFVYGNQRDVPYKMRRVTAGGPLEWTLGARHRTEKTYAEKMSAIGVTLGQRLRPPVRVAAPAGTG 415
BLAST of mRNA_Ecto-sp13_S_contig1373.2931.1 vs. uniprot
Match: D7G1T3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1T3_ECTSI) HSP 1 Score: 274 bits (700), Expect = 5.640e-87 Identity = 134/153 (87.58%), Postives = 140/153 (91.50%), Query Frame = 1
Query: 820 MPGGISGPGKRDTNGGAVPERGAGGXXXXXXXXXXVGGKSFVGLMGEDDGGTWVESQNVDGLEILVKDDLRLWPDRLWVNDRGFDRQGNFVYGNQRDVPYKMRRVTAGGPLEWTLGARHRTEKTYADKMSAIGVTPGQRVGPPVRVAAPAGTG 1278
MPGGISGPGK+DT+GGAVPERGAG GGKSFVGLMGEDD GTWVESQNVDGLEILVKDDLRLWPDRLWVNDRGFDRQGNFVYGNQRDVPYKMRRVTAGGPLEWTLGARHRTEKTYA++MSAIGVTPGQR+GPPVR+AAPAGTG
Sbjct: 1 MPGGISGPGKQDTDGGAVPERGAG------EDAAGGGGKSFVGLMGEDDSGTWVESQNVDGLEILVKDDLRLWPDRLWVNDRGFDRQGNFVYGNQRDVPYKMRRVTAGGPLEWTLGARHRTEKTYAERMSAIGVTPGQRLGPPVRIAAPAGTG 147
BLAST of mRNA_Ecto-sp13_S_contig1373.2931.1 vs. uniprot
Match: D7G1T2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1T2_ECTSI) HSP 1 Score: 247 bits (631), Expect = 2.910e-76 Identity = 154/177 (87.01%), Postives = 156/177 (88.14%), Query Frame = 1
Query: 37 MMQRVVLLLFQIVPSASLLVSWTAARSRLSQKVQRSCTSVDSHTPGGGLSGGEPRDAMISELLQLFQGEFDNYDQVVADRKAGMTPGPGGGHEHIHCSLKRLDPAEVPGQVAAXXXXXXXXXXXXXXXXXXXXXXXXERPLAVVA--------AKYYFNGDSNVVFRYRLYSFHACP 543
MMQRVVLLL Q+VPSA LLVSWTAARSRLSQKVQRSCTSVDSHTPGGGLSG EPRDAM+SELLQLFQGEFDNYDQVVADRKAGMTPGPGGGHEHIHCSLKRLDPAEVP QVA XXXXXXXXXXXXXXXXXXXXXXXX AKYYFNGDSNVVFRYRLYSFHACP
Sbjct: 1 MMQRVVLLLLQVVPSAGLLVSWTAARSRLSQKVQRSCTSVDSHTPGGGLSGDEPRDAMVSELLQLFQGEFDNYDQVVADRKAGMTPGPGGGHEHIHCSLKRLDPAEVPEQVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKYYFNGDSNVVFRYRLYSFHACP 177
BLAST of mRNA_Ecto-sp13_S_contig1373.2931.1 vs. uniprot
Match: A0A5J4Z4Z5_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z4Z5_PORPP) HSP 1 Score: 153 bits (386), Expect = 4.420e-37 Identity = 106/325 (32.62%), Postives = 135/325 (41.54%), Query Frame = 1
Query: 199 RDAMISELLQLF----QGEFDNYDQVVADRKAGMTPGPGGGHEHIHCSLKRLDPAEVPGQVAAXXXXXXXXXXXXXXXXXXXXXXXXERPLAVVAAKYYFNGDSNVVFRYRLYSFHACPPNTPGARGEAVMRLWRLLPHVEARLRTNSYDLTSFSWSDDDTNQREPGRGSDDVSSERCSKEGRTGDDVVERIFGCEIYWGRHQAGGEDEKTMPGGISGPGKRDTNGGAVPERGAGGXXXXXXXXXXVGGKSFVGLMGEDDGGTWVESQNVDGLEILVKDDLRLWPDRLWVNDRGFDRQGNFVYGNQRDVPYKMRRVTAGGPLEWT 1161
R AM L LF +G+FDNYDQV+ +++ G T G GGGHEHIHC L R+ +++ AKYYFNGD N V+R R+Y + +G MR++R EARLR Y + W TGDD+ E + GCE++W R + KT +G F G M GG V S + ILVKDDL L + LWVNDRGFD G+FVYGN+R VPYKM+R + LEWT
Sbjct: 253 RRAMAQRNLDLFMTSFEGDFDNYDQVLENKRLGFTEGEGGGHEHIHCKLSRIGENS-----------------------------------SMIFAKYYFNGDPNSVYRARVYEIFL---DDSDDKGVIEMRIYRFYAETEARLRACGYRINEIDW---------------------------TGDDLYEWLQGCEVFWERRKF-----KTAQ--------------------------ALEQSEIIGPFFFRGFMAG--GGCTVFSPTMKS-RILVKDDLILTGNELWVNDRGFDENGHFVYGNRRGVPYKMKRTSCNPHLEWT 478
BLAST of mRNA_Ecto-sp13_S_contig1373.2931.1 vs. uniprot
Match: K0TER5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TER5_THAOC) HSP 1 Score: 136 bits (342), Expect = 9.950e-32 Identity = 111/366 (30.33%), Postives = 149/366 (40.71%), Query Frame = 1
Query: 220 LLQLFQGEFDNYDQVVADRKAGMTPGPGGGHEHIHCSLKRLDPAEVPGQVAAXXXXXXXXXXXXXXXXXXXXXXXXERPLAVVAAKYYFNGDSNVVFRYRLYSFHACPPNTPGARGEAV--MRLWRLLPHVEARLRTNSYDLTSF------SWSDDDTNQREPGRGSDDVSSERCSKEGRTGDDVVERIFGCEIYWGRHQAGGEDEKTMPGGISGPGKRDTNGGAVPERGAGGXXXXXXXXXXVGGKSFVGLMGEDDGGTWVESQN-VDGLEILVKDDLRLWPDRLWVNDRGFDRQGN-----------FVYGNQRDVPYKMRRV-----TAG---------GPLEWTLGARHRTEKTYADKMSAI 1215
L FQG+FDNY+QVV DR+ G+TPG GGGHEHIHC+L VP R + A +YFNG+ +FR+R Y A P + G AV M+L L P +E LR S + S+ WS +D + E + +V + GC++ W + + + D SF M G V+S + + G IL+KD+L LW D+ W+NDRG+D G FVYGN+R VPYK+ RV TAG G L+WTLG +RT Y K+ AI
Sbjct: 80 LTSTFQGDFDNYNQVVLDRQHGLTPGAGGGHEHIHCTL-------VP------------------CPDFGDDAEGDTRRSRWILAAFYFNGNPQQIFRFRAYQLWA-PDHDGMDDGSAVVRMKLNTLSPILEQALRKRSEEPCSWWRTAWKVWSGEDKKK----------FHEDIIPWSQFIPSLVSPLQGCDVLWEEDWDAAKHSYLLDNAYNSDESNDIT--------------------SFCDTSFHATMEAGSSGAIVDSISMIPGQRILIKDELSLWEDKFWINDRGYDPDGETDSMNENQDMPFVYGNRRGVPYKLERVSHIVSTAGAELQVAPVSGELQWTLGGSYRTPGEYEAKLKAI 389
BLAST of mRNA_Ecto-sp13_S_contig1373.2931.1 vs. uniprot
Match: B7G7Q1_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G7Q1_PHATC) HSP 1 Score: 128 bits (321), Expect = 1.800e-29 Identity = 108/344 (31.40%), Postives = 139/344 (40.41%), Query Frame = 1
Query: 220 LLQLFQGEFDNYDQVVADRKAGMTPGPGGGHEHIHCSLKRLDPAEVPGQVAAXXXXXXXXXXXXXXXXXXXXXXXXERPLAVVAAKYYFNGDSNVVFRYRLYSFHACPPNTPGARGEAVMRLWRLLPHVEARLRTNSYDLTSFSWSDDDTNQREPGRGSDDVSSERCSKEGRTGDDVVERIFGCEIYWGRHQAGGEDEKTMPGGISGPGKRDTNGGAVPERGAGGXXXXXXXXXXVGGKSFVGLMGEDDGGTWVESQNVDGLEILVKDDLRLWPDRLWVNDRGFDRQG-NFVYGNQRDVPYKMRRVT----------AGGPLEWTLGARHRTEKTYADKMSAIG 1218
LL FQG+FDNY+QV+ DRK G+ P GGGHEHIHCSL P ++AA +YF+G +FR+R Y P L L P +E RLR R P S + E +GR V+ + C++ W + P + D A+ E G V + GE VESQ + G +IL+KD L LWPD LW++DRGFD F+YGNQR VPY++ RVT L WTLG R+E Y DKM A+G
Sbjct: 66 LLDRFQGDFDNYNQVIHDRKKGLLPREGGGHEHIHCSLV---PVSETARLAA----------------------------------FYFDGVPGAIFRFRFYDL------IPVDESTIDTVLHTLHPELERRLR------------------RCPDPSSWPLFFEEFGVKGR-----VQLLPKCDVRWSW--------------VLDPVQHDY---ALDE--------------GPNGLHAVMVHGE----ALVESQMMPGQKILIKDQLSLWPDELWIHDRGFDPDTMRFIYGNQRGVPYRLERVTDIALNNGRTIVQEDLAWTLGPDFRSEGEYQDKMVAVG 308
BLAST of mRNA_Ecto-sp13_S_contig1373.2931.1 vs. uniprot
Match: A0A1E7FNR9_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FNR9_9STRA) HSP 1 Score: 108 bits (269), Expect = 9.320e-22 Identity = 110/414 (26.57%), Postives = 156/414 (37.68%), Query Frame = 1
Query: 103 TAARSRLSQKVQRSCTSVDSHTPGGGLSGGEPRDAMISELL-QLFQGEFDNYDQVVADRKAGMTPGPGGGHEHIHCSLKRLDPAEVPGQVAAXXXXXXXXXXXXXXXXXXXXXXXXERPLAVVAAKYYFNGDSNVVFRYRLYSF----------HACPPNTPGARGEAVMRLWRLLPHVEARLRTNSYDLTSFSWSDDDTNQREPGRGSDDVSSERCSKEGRTGDDVVERIFGCEIYWGRHQAGGEDEKTMPGGISGPGKRDTNGGAVPERGAGGXXXXXXXXXXVGGKSFVGLMGEDDGGTWVESQNVDGLEILVKDDLRLWPDRLWVNDRGFDR-QGNFVYGNQRDVPYKMRRVTAGGP------------------------------LEWTLGARHRTEKTYADKMSAIG 1218
+A + V C S S G G GE ++++L + FQG+FDNY QVV DRK G+ P GGGHEH HC+L P ++AA ++F+G+ N +FR+R Y H N MRL L P +E L+++S D SW D N + G S+ + V + CEI W + + IS +D S +M G V S V G++I + D L L+ ++NDRGFD G F+YGNQRD+PY++ RV+ P LEWT+G ++RT + Y K+ IG
Sbjct: 57 SAVTGTFQEMVVEPCESTSS-VDGVGDGDGESSHEKVTKILSEWFQGDFDNYAQVVEDRKNGLLPREGGGHEHFHCTLV---PVTESTRLAA----------------------------------FFFDGNPNRIFRFRYYELLTPTIINDVDHQHSNNVT-----VEMRLNTLHPELEQLLKSHSTD--PLSWPDIFKNFQHEGVSSNSSXXXXXXXXSDEKNQKVIPLSKCEIVWSF-----DKDPIQHSYISSDDGKDDE---------------------AENMSLHAVMVH--GEQVVNSTIVPGMQIRILDQLSLYQHVFYINDRGFDPITGAFIYGNQRDIPYRLERVSNILPSATSAADXXXXXXSTADRRERLQLEVINPELEWTIGPKYRTIEEYDSKLKVIG 397
BLAST of mRNA_Ecto-sp13_S_contig1373.2931.1 vs. uniprot
Match: A0A7S2PZJ6_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PZJ6_9STRA) HSP 1 Score: 106 bits (264), Expect = 4.190e-21 Identity = 110/406 (27.09%), Postives = 155/406 (38.18%), Query Frame = 1
Query: 202 DAMISELLQLFQGEFDNYDQVVADRKAGMTPGPGGGHEHIHCSLKRLDPAEVPGQVAAXXXXXXXXXXXXXXXXXXXXXXXXERPLAVVAAKYYFNGDSNVVFRYRLYSFHACPP---NTPGARGEAV-MRLWRLLPHVEARLRTNSYDLTSFSWSD------DDTNQREPGRGSDDVSSERCSKEGRTGDDVVERIFGCEIYWG------RH-----QAGGEDEKTMPGGISGPGKRDTNGGAVPERGAGGXXXXXXXXXXVGGKSFVGLMGEDDGGTWVESQN-VDGLEILVKDDLRLWPDRLWVNDRGFDRQ------------------GN--FVYGNQRDVPYKMRRVT--------------AGGP------------LEWTLGARHRTEKTYADKMSAI 1215
D LL FQG+FDNY QV+ DR + P GGGHEHIHC+L VP A + A +YFNG+ +FR+R+Y + N+ GE V M+L L +E +LR S D W + + N+ E D+ S+E + +V + GC++ W +H G D + P I+ ++ N V G M G V+S + + G IL+KD+L LW D W+NDRG+D GN FVYGN+R VPYK+ RV+ + P L WTLG R + Y +K+ A+
Sbjct: 57 DNYFHHLLSQFQGDFDNYHQVIRDRNHALAPADGGGHEHIHCTL-------VPCPHTAVTQEQRQNNDQW------------------ILAAFYFNGNPRQIFRFRMYKLISPQDDDSNSNNIDGEKVRMKLHTLSSELEQQLRQYS-DQPCTWWRETYDVWLNSINEGE-NESDDNRSNEWNTFRSEGIQHLVSPLVGCDVLWDPQWDPKKHAYLNVDEYGNDTSSSPTTIN----KNNN---------------------VDGCHAT--MEAGSAGAIVDSISLIPGKRILIKDELSLWEDEFWINDRGYDPDAVVDDNDGGGNDENEDGVGNMPFVYGNRRGVPYKLERVSCISTENTNEGSDDMSSAPPLLLERTIHKQELAWTLGDDFREQTEYEEKLRAV 408
BLAST of mRNA_Ecto-sp13_S_contig1373.2931.1 vs. uniprot
Match: A0A7S1XI40_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1XI40_9RHOD) HSP 1 Score: 99.4 bits (246), Expect = 2.430e-19 Identity = 61/193 (31.61%), Postives = 79/193 (40.93%), Query Frame = 1
Query: 211 ISELLQLFQGEFDNYDQVVADRKAGMTPGPGGGHEHIHCSLKRLDPAEVPGQVAAXXXXXXXXXXXXXXXXXXXXXXXXERPLAVVAAKYYFNGDSNVVFRYRLYSFHACPPNTPGARGEAVMRLWRLLPHVEARLRTNSYDLTSFSWSDDDTNQREPGRGSDDVSSERCSKEGRTGDDVVERIFGCEIYWGR 789
++ L F+GEFDNYDQV+A+ G++P GGGHEHIHCSL + E + AKYYF GD VFR RLY N RG MR++R E+RLR +YD+ W T DD+ E + GCE++W R
Sbjct: 160 LALFLSEFKGEFDNYDQVLANNALGLSPREGGGHEHIHCSLSHITKGES----------------------------------TFIFAKYYFGGDPGAVFRARLYRVLL---NETCERGVLEMRIYRFFEETESRLRACNYDIEHTDW---------------------------TEDDLYEWLEGCEVFWER 288
BLAST of mRNA_Ecto-sp13_S_contig1373.2931.1 vs. uniprot
Match: A0A7S4N064_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N064_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 5.340e-19 Identity = 105/391 (26.85%), Postives = 146/391 (37.34%), Query Frame = 1
Query: 220 LLQLFQGEFDNYDQVVADRKAGMTPGPGGGHEHIHCSLKRLDPAEVP---GQVAAXXXXXXXXXXXXXXXXXXXXXXXXERPLAVVAAKYYFNGDSNVVFRYRLYSFHAC-------PPNTPGARGEAV-MRLWRLLPHVEARLRTNSYDLTSFSWSDDDTNQREPGRGSDDVSSERCSKEGRTGDDVV-------ERIFGCEIYWG------RHQAGGEDEKTMPGGISGPGKRDTNGGAVPERGAGGXXXXXXXXXXVGGKSFVGLMGEDDGGTWVESQNVDGLEILVKDDLRLWPDRLWVNDRGF-------DRQGN-----FVYGNQRDVPYKMRRVTA-------GGP---------------LEWTLGARHRTEKTYADKMSAIG 1218
L+ QG+FDNY QV DR GM P GGGHE +HC++ ++ + G +AA E AV++A +YF+G +FR+R+Y+ + C GE+ MRL+ L P VE LR D +R G + E ++EG + GC++ W RH + PER + +M D G V S G + V+D+L LW D LW+NDRGF D GN +VYGN+R VPY M R GG L WT+G+ R E Y ++M A+G
Sbjct: 34 LVSRLQGDFDNYRQVERDRSEGMLPREGGGHEWMHCTVVPVEGRALEALNGAIAAPRGGEGEG----------------EADAAVLSA-FYFDGVPERIFRFRMYALNYCRGGDXXXXXXXXXXXGESARMRLYTLGPSVEGPLRAAP-----------DAPERWGGALMASLLREDGNEEGXXXXXXXXPRPPPFRLLEGCDVLWTPTPHRTRHAYAARNR--------------------PER------------------ALHAVMTND--GAVVPSVMKPGTYLRVRDELSLWEDELWINDRGFAPECDRTDDPGNIGEDDWVYGNRRGVPYAMERAARFSTVDGDGGDDDDDAVFAREVVDAALAWTMGSSWRDEDEYCERMEAVG 356 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1373.2931.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1373.2931.1 >prot_Ecto-sp13_S_contig1373.2931.1 ID=prot_Ecto-sp13_S_contig1373.2931.1|Name=mRNA_Ecto-sp13_S_contig1373.2931.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=422bp MMQRVVLLLFQIVPSASLLVSWTAARSRLSQKVQRSCTSVDSHTPGGGLSback to top mRNA from alignment at Ecto-sp13_S_contig1373:4672..8065+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1373.2931.1 ID=mRNA_Ecto-sp13_S_contig1373.2931.1|Name=mRNA_Ecto-sp13_S_contig1373.2931.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3394bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1373:4672..8065+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1373:4672..8065+ >mRNA_Ecto-sp13_S_contig1373.2931.1 ID=mRNA_Ecto-sp13_S_contig1373.2931.1|Name=mRNA_Ecto-sp13_S_contig1373.2931.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1266bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1373:4672..8065+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |