mRNA_Ecto-sp13_S_contig13728.2930.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13728.2930.1
Unique NamemRNA_Ecto-sp13_S_contig13728.2930.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13728.2930.1 vs. uniprot
Match: D7FXY3_ECTSI (Hydroxymethylglutaryl-CoA synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY3_ECTSI)

HSP 1 Score: 761 bits (1966), Expect = 3.220e-268
Identity = 469/541 (86.69%), Postives = 477/541 (88.17%), Query Frame = 1
Query:    1 LIVPRKGPARPTGGCGAVAVLIGPDAPLVINMKTRASYACDVWDFFKPDMSSEYPRVNGQLSQTCYLRALDSCYNRLAAKKTAAXXXXXXXXXXXXDSEGEEGDGDKRAPFVLGDVEHVLCHSPYNKLVQKSFARMAFSDARRLKGTGKPLGEGQEEALGKWLDVPAEETYDDRDLEKALKAFAGVSSEAYRNKVEPGCRLSKQIGNTYTASVFANIVCLVCARGAALEGETALVFSYGSGAVATMYELHFRDTTAATATAAASATPTFSVAKIAETVGLSERLADRERLPPAELDAALAARSHAHALAXXXXXXXXXXAEGGGFVFVPGFPLDRLFPGVFYLKGIGGDGVRGYGRRDKEAPRTRGGGALAPSLVKKEEALGAGDREXXXXXXXXXXXXXXXXXXXXXXXXXXXARPVANGAVPAEAPSSDSSLANXXXXXXXXXXXXXXXXXXXXXXXXXGKEAPAXATATSPAA--GGKLGALLLPRVVVTGVACGLPGQEKVFERDNLARLLAGQGCVKRLSAGSTAALVEKNVVQVK 1617
            + V  +GPARPTGGCGAVAVL+GPDAPLVINMKTRASYACDVWDFFKPDMSSEYPRVNGQLSQTCYLRALDSCYNRLAAKKTA XXXXXXXXXXXX     EG GDKRAPFVLGDVEHVLCHSPYNKLVQKSFARMAFSDARRLKGTGKPLGEGQEEALGKWLDVPAEETYDDRDLEKALKAFAGVSS AYRNKVEPGCRLSKQIGNTYTASVFANIVCLVCARGAALEGETALVFSYGSGAVATMYELHFRDTTA TA AAA+ATPTFSVAKIAE VGLSERLADRERLPPAELDAALAARSH     XXXXXXXXXX     FVFVPGFPLDRLFPGVFYL+GIGGDGVRGYGRRDKEAPR RGG ALAPSLVKKEEALGAGDRE                  XXXXXXXXXARPVANGAVP+EAPSSDSSLAN  XXXXXXXXXXXXXXXXXXXXXXX      X          GGKLGALLLPRVVVTGVACGLPGQE+VFERDNLARLLAGQGCVK+LS GST ALVEKNVVQVK
Sbjct:  162 IAVYAEGPARPTGGCGAVAVLVGPDAPLVINMKTRASYACDVWDFFKPDMSSEYPRVNGQLSQTCYLRALDSCYNRLAAKKTAXXXXXXXXXXXXXXXXXXEGGGDKRAPFVLGDVEHVLCHSPYNKLVQKSFARMAFSDARRLKGTGKPLGEGQEEALGKWLDVPAEETYDDRDLEKALKAFAGVSSGAYRNKVEPGCRLSKQIGNTYTASVFANIVCLVCARGAALEGETALVFSYGSGAVATMYELHFRDTTAVTAAAAAAATPTFSVAKIAEAVGLSERLADRERLPPAELDAALAARSHXXXXXXXXXXXXXXXXXXXXFVFVPGFPLDRLFPGVFYLRGIGGDGVRGYGRRDKEAPRARGGRALAPSLVKKEEALGAGDREEEVATTATMGSRTETSNSXXXXXXXXXARPVANGAVPSEAPSSDSSLANRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGKLGALLLPRVVVTGVACGLPGQEEVFERDNLARLLAGQGCVKKLSPGSTTALVEKNVVQVK 702          
BLAST of mRNA_Ecto-sp13_S_contig13728.2930.1 vs. uniprot
Match: A0A6H5JDP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDP7_9PHAE)

HSP 1 Score: 524 bits (1350), Expect = 1.960e-174
Identity = 343/404 (84.90%), Postives = 346/404 (85.64%), Query Frame = 1
Query:  406 MAFSDARRLKGTGKPLGEGQEEALGKWLDVPAEETYDDRDLEKALKAFAGVSSEAYRNKVEPGCRLSKQIGNTYTASVFANIVCLVCARGAALEGETALVFSYGSGAVATMYELHFRDTTAATATAAASATPTFSVAKIAETVGLSERLADRERLPPAELDAALAARSHAHALAXXXXXXXXXXAEGGGFVFVPGFPLDRLFPGVFYLKGIGGDGVRGYGRRDKEAPRTRGGGALAPSLVKKEEALGAGDREXXXXXXXXXXXXXXXXXXXXXXXXXXXARPVANGAVPAEAPSSDSSLANXXXXXXXXXXXXXXXXXXXXXXXXXGKEAPAXATATSPAAGGKLGALLLPRVVVTGVACGLPGQEKVFERDNLARLLAGQGCVKRLSAGSTAALVEKNVVQVK 1617
            MAFSDARRLKGTGKPLGEGQEEALGKWLDVPAEETYDDRDLEKALK FAGVSSEAYRNKVEPGCRLSKQIGNTYTASVFANIVCLVCARGAALEGETALVFSYGSGAVATMYELHFR+TTAATATAAA+ATPTFSVAKIAE VGL ERLADRERLPPAELDAALAARSH     XXXXXXXXXX     F FVP FPLDRLFPGVFYLKGIGGDGVRGYGRRDKEAPR RGGGALAPSLVKKEE LGAGDRE                   XXXXXXXX RPVANGAV AEAPSS      XXXXXXXXXXXXXXXXXXXXXXXXX      X        GGKLGALLLPRVVVTGVACGLPGQE+VFERDNLARLLAGQGCVKRLSAGSTAALVEKNVVQVK
Sbjct:    1 MAFSDARRLKGTGKPLGEGQEEALGKWLDVPAEETYDDRDLEKALKTFAGVSSEAYRNKVEPGCRLSKQIGNTYTASVFANIVCLVCARGAALEGETALVFSYGSGAVATMYELHFRETTAATATAAAAATPTFSVAKIAEAVGLPERLADRERLPPAELDAALAARSHXXXXXXXXXXXXXXXXXXXSFAFVPEFPLDRLFPGVFYLKGIGGDGVRGYGRRDKEAPRARGGGALAPSLVKKEETLGAGDREEVATTATMGSRTETSNSGEXXXXXXXX-RPVANGAVLAEAPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----GGKLGALLLPRVVVTGVACGLPGQEEVFERDNLARLLAGQGCVKRLSAGSTAALVEKNVVQVK 399          
BLAST of mRNA_Ecto-sp13_S_contig13728.2930.1 vs. uniprot
Match: A0A836C9U2_9STRA (Hydroxymethylglutaryl-coenzyme A synthase N terminal-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9U2_9STRA)

HSP 1 Score: 318 bits (816), Expect = 5.060e-94
Identity = 188/375 (50.13%), Postives = 229/375 (61.07%), Query Frame = 1
Query:    1 LIVPRKGPARPTGGCGAVAVLIGPDAPLVINMKTRASYACDVWDFFKPDMSSEYPRVNGQLSQTCYLRALDSCYNRLAAKKTAAXXXXXXXXXXXXDSEGEEGDGDKRAPFVLGDVEHVLCHSPYNKLVQKSFARMAFSDARRLKGTGKPLGEGQEEALGKWLDVPAEETYDDRDLEKALKAFAGVSSEAYRNKVEPGCRLSKQIGNTYTASVFANIVCLVCARGAALEGETALVFSYGSGAVATMYELHFRDTTAATATAAASATPTFSVAKIAETVGLSERLADRERLPPAELDAALAARSHAHALAXXXXXXXXXXAEGGGFVFVPGFPLDRLFPGVFYLKGIGGDGVRGYGRRDKEAPRTRGGGALAPSLV 1125
            + V  +GPARPTGGCGAVAVLIGPDAPL +N   R ++ACDVWDFFKPDMSSEYPRV+G LSQ+CYLRA+D CY+R A KK  +                        AP+     +H L HSPYNKLVQKS+AR+ F+DARR    G+PL       L  WLD P E+TY+D  L  ALK   GV++ AY+ +V PGC LS++IGNTYTASVFANI CLV   GAAL+G    VFSYGSGA+AT+YEL  R   A T+TAA      F++A++  ++ L ERLA RE+L   +L AALAAR+ AH  A                 F P +   RLFPG FYL  +  D  R Y R   +A R  GG  LA +  
Sbjct:  164 IAVYAEGPARPTGGCGAVAVLIGPDAPLAVNACARTTHACDVWDFFKPDMSSEYPRVDGALSQSCYLRAIDDCYSRFADKKERSTDAAAATA----------------APYTAESADHFLFHSPYNKLVQKSYARLFFTDARRCSAAGRPLPPHLA-PLEPWLDAPLEDTYNDVKLAAALK---GVAAAAYKARVAPGCVLSQRIGNTYTASVFANIACLVDREGAALDGARVAVFSYGSGALATLYELVGR---APTSTAAG-----FTLARMQASLALDERLAAREKLTAEDLSAALAARAAAHDAAP----------------FAPAYLPQRLFPGTFYLAEVRTDATRRYARVPADALRLTGGPLLAAAAA 494          
BLAST of mRNA_Ecto-sp13_S_contig13728.2930.1 vs. uniprot
Match: A0A4D9DA31_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DA31_9STRA)

HSP 1 Score: 261 bits (667), Expect = 2.180e-72
Identity = 152/360 (42.22%), Postives = 209/360 (58.06%), Query Frame = 1
Query:   19 GPARPTGGCGAVAVLIGPDAPLVINMKTRASYACDVWDFFKPDMSSEYPRVNGQLSQTCYLRALDSCYNRLAAKKTAAXXXXXXXXXXXXDSEGEEGDGDKRAPFVLGDVEHVLCHSPYNKLVQKSFARMAFSDARRLKGTGKPLGEGQEEALGKWLDVPAEETYDDRDLEKALKAFAGVSSEAYRNKVEPGCRLSKQIGNTYTASVFANIVCLVCARGAALEGETALVFSYGSGAVATMYELHFRDTTAATATAAASATPTFSVAKIAETVGLSERLADRERLPPAELDAALAARSHAHALAXXXXXXXXXXAEGGGFVFVPGFPLDRLFPGVFYLKGIGGDGVRGYGRRDKEAPRTRG 1098
            GPA+PTGGCGAVA+L+GPDAPLVI+ + RA++A + WDFFKP  +SEYP V+G++S+ CYL+ALD CY R A K+  A                         PF    +++   H PYNKLVQK+F R+ F DARR K       EG E +L  W+    EETYDDRDLE  L+   G+S + +  +V P C +S Q+GNTYTASV+ N+VCL+  +  AL G+  LV+S+GSGA+AT++++  R  +++   +       F++AKIA  V L +RL +RE + P EL  A+  R                    GGFV  P + +  LFPG FYL+ +  D  R Y R+   APR +G
Sbjct:  281 GPAKPTGGCGAVALLVGPDAPLVIDPQLRATHASNTWDFFKPKFASEYPEVDGKMSKDCYLKALDDCYMRFAGKQEEAFGK----------------------PFKADAIDYFCFHHPYNKLVQKAFGRLFFMDARRGK---LKKAEGWE-SLDPWISNSLEETYDDRDLETLLR---GLSHDRFSKRVAPSCLVSMQVGNTYTASVYMNLVCLIAQKAEALVGKRILVYSFGSGALATIFQITGRQPSSSVNASR------FTLAKIASAVNLMDRLLERETVTPEELSEAIRIREK--------------NVNRGGFV--PQYSVSSLFPGTFYLEEVRPDFTRVYLRKSSTAPRIKG 589          
BLAST of mRNA_Ecto-sp13_S_contig13728.2930.1 vs. uniprot
Match: A0A7S2LNP4_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LNP4_9STRA)

HSP 1 Score: 250 bits (639), Expect = 3.140e-69
Identity = 191/558 (34.23%), Postives = 263/558 (47.13%), Query Frame = 1
Query:   16 KGPARPTGGCGAVAVLIGPDAPLVINMKTRASYACDVWDFFKPDMSSEYPRVNGQLSQTCYLRALDSCYNRLAAKKTAAXXXXXXXXXXXXDSEGEEGDGDKRAPFVLGDVEHVLCHSPYNKLVQKSFARMAFSDARRL--KGTGKPLGEGQE--EALGKWLDVPAEETYDDRDLEKALKAFAGVSSEAYRNKVEPGCRLSKQIGNTYTASVFANIVCL---VCARGAALEGETALVFSYGSGAVATMYELHFRDTTAATATAAASATPTFSVAKIAETVGLSERLADRERLPPAELDAALAARSHAHALAXXXXXXXXXXAEGGGFVFVPGFPLDRLFPGVFYLKGIGGDGVRGYGR----------RDKEAPRTRGGGALAPSLV----KKEEALGAGDREXXXXXXXXXXXXXXXXXXXXXXXXXXXARPVANGAVPAEAPSSDS-SLANXXXXXXXXXXXXXXXXXXXXXXXXXGKEAPAXATATSPAAGGKLGALLLPRVVVTGVACGLPGQE--KVFERDNLARLLAGQGCVKRLSAGSTAALVEKNVVQVK 1617
            +GPARPT G GAVAVLIG DAPL  N + +A++A +VWDF+KPD + EYP V+G LSQTCY +AL+ CY RLA K  A                   GD D  A F     ++++ H+PYNKLVQKS+AR+ F DARR   K       +  +    L +W+  P  ETY DR L+ ALK    +S+ +++ ++      SK+IGNTYTASVF  +  L   V  RG    G+  +VFSYGSGA+ATMY LH RD T +           F++AK+A+T+ L+ RLA RE + P ELD AL  R+  H                 G  ++P +P +RLFPG +YL GIG + VR Y R          +  E   T     LAP+LV    K++E                                   + PV            D+  + N                                                    V++GVA GLPG+    VF  DNL RL++G+ C+  ++ G+ + +++ NVVQ+K
Sbjct:  155 RGPARPTCGVGAVAVLIGRDAPLQFNPREKATHAANVWDFYKPDHTVEYPTVDGALSQTCYYQALEGCYLRLANKIDAISNAT--------------GD-DASASFDAESADYLVFHAPYNKLVQKSYARLYFLDARRRAEKKYSSTTNDNDDTNNPLAEWVSKPIHETYTDRALDSALKK---LSTTSFKARLADANAASKEIGNTYTASVFVGLASLIDRVGGRGELSVGKNVVVFSYGSGALATMYRLHVRDPTQSR----------FTIAKMAKTLSLTARLAQREEVDPCELDHALETRARMH---------------HAGPNYIPLYPPERLFPGTYYLNGIGSNWVRTYSRLPLSTNSDINQIMERGETTTFQPLAPALVLQMAKRDEV----------------------------------STPVTGRLRVLSKSDLDAVEMLNEANNRIAC--------------------------------------------VISGVAAGLPGKSGTAVFNEDNLNRLVSGEQCITPINTGAKSTMLDMNVVQLK 591          
BLAST of mRNA_Ecto-sp13_S_contig13728.2930.1 vs. uniprot
Match: A0A7S1XK22_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XK22_9STRA)

HSP 1 Score: 237 bits (605), Expect = 1.630e-65
Identity = 164/384 (42.71%), Postives = 206/384 (53.65%), Query Frame = 1
Query:    1 LIVPRKGPARPTGGCGAVAVLIGPDAPLVINMKTRASYACDVWDFFKPDMSSEYPRVNGQLSQTCYLRALDSCYNRLAAKKTAAXXXXXXXXXXXXDSEGEEGDGDKRAPFVLGDVEHVLCHSPYNKLVQKSFARMAFSDAR-----------------RLKGTGKPLGEGQEEALGKWLDVPA-EETYDDRDLEKALKAFAGVSSEAYRNKVEPGCRLSKQIGNTYTASVFANIVCLVCARGAALEGETALVFSYGSGAVATMYELHFRDTTAATATAAASATPTFSVAKIAETVGLSERLADRERLPPAELDAALAARSHAHALAXXXXXXXXXXAEGGGFVFVPGFPLDRLFPGVFYLKGIGGDGVRGYGRRDKEAPRTRG 1098
            + V   GPARPTGGCGAVAVLIGPDAPL I++K RA++A + WDF+KP    EYP VNG++SQTCYL ALD  Y R +A    A                E G    +A       ++ + H+PYNKLVQK+++R+   DA                   ++  G   GE    A    +   A   TY DRDL+ AL++ AG  +  Y +KV P   LSK IGNTYTASVF  I  L+   GA+LEG+  ++FSYGSGA+ATMY L  R  T A A         FS+  +   + L  RL DR+ L P EL  AL AR   H             AE G   F P +P+DRL+PG +YLK +  DGVR Y RR   APR RG
Sbjct:  484 IAVYEAGPARPTGGCGAVAVLIGPDAPLQIDLKGRATHASNAWDFYKPHPDVEYPEVNGKVSQTCYLHALDDVYTRFSAMWRGA----------------EGGAAPSKA------ADYFIFHAPYNKLVQKAWSRVMLCDALVDGCGDFTAEAAAVVQPAVQKAGVAAGETPAAAANGVVKGAAWAGTYADRDLDYALRS-AGAGT--YGSKVSPAGHLSKMIGNTYTASVFCGIASLLDKVGASLEGKNVVLFSYGSGALATMYRLKGRRCTGAHA-------GRFSLDAMQRCLSLDARLDDRDVLSPDELTHALDARHELHT-----KTHKHGAAELG--TFEPLYPVDRLYPGTYYLKCVHADGVREYERRAAAAPRVRG 828          
BLAST of mRNA_Ecto-sp13_S_contig13728.2930.1 vs. uniprot
Match: A0A448ZF00_9STRA (Hydroxymethylglutaryl-CoA synthase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZF00_9STRA)

HSP 1 Score: 229 bits (585), Expect = 1.740e-64
Identity = 155/378 (41.01%), Postives = 205/378 (54.23%), Query Frame = 1
Query:   16 KGPARPTGGCGAVAVLIGPDAPLVINMKTRASYACDVWDFFKPDMSSEYPRVNGQLSQTCYLRALDSCYNRLAAKKTAAXXXXXXXXXXXXDSEGEEGDGDKRAPFVLGDVEHVLCHSPYNKLVQKSFARMAFSDAR-RLKGTGKPLGEGQEEALGK-WLDVPAEETYDDRDLEKALKAFAGVSSEAYRNKVEPGCRLSKQIGNTYTASVFANIVCLVC---ARGAALEGETALVFSYGSGAVATMYELHFRDTTAATATAAASATPTFSVAKIAETVGLSERLADRERLPPAELDAALAARSHAHALAXXXXXXXXXXAEGGGFVFVPGFP-LDRLFPGVFYLKGIGGDGVRGYGRRDKEAPRTRGGGALAPSLVKK 1131
            +G ARPT G GAVAVL+G DAP+V N K RA++A +VWDFFKPD + EYP V+G+LSQ CY RAL+  Y R   K                 ++    DG     F     ++ + H+PYNKLVQKSF R+ F DAR R + TGK      +EA G+  L  P EETY DR LE  LK     S+  ++ ++E     SK +GNTYTASVF  +  L+     RG    G++  VFSYGSGA+ATMY L  R+  ++           FS+ K+A+++ L ERLA RE++ P+ELD AL  R+  H                 G  + P +P + RLFPG +YL GI     R Y R   +A     G  LAP +V +
Sbjct:  206 RGGARPTSGAGAVAVLVGRDAPIVFNPKDRATHAANVWDFFKPDHTVEYPTVDGKLSQVCYYRALEDVYTRFCDKLGTNSSSNGRAEEKKTXTD----DGSDCDIFDATSHDYFVFHAPYNKLVQKSFGRLMFLDARKRFERTGKV-----DEAFGEELLSKPIEETYADRALEGILKK---QSAADFKKRLEDSNMTSKLVGNTYTASVFLGLASLIDRAGGRGDLTVGKSIAVFSYGSGALATMYRLSVREPYSSR----------FSIQKMADSLNLMERLASREKVHPSELDHALETRARMHR---------------AGSPYSPVYPTVGRLFPGTYYLNGIDSSWRRTYSRVPLDAKMDPHGTPLAPPIVMR 546          
BLAST of mRNA_Ecto-sp13_S_contig13728.2930.1 vs. uniprot
Match: M4BVN1_HYAAE (Hydroxymethylglutaryl-CoA synthase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BVN1_HYAAE)

HSP 1 Score: 230 bits (587), Expect = 1.910e-64
Identity = 131/303 (43.23%), Postives = 185/303 (61.06%), Query Frame = 1
Query:    1 LIVPRKGPARPTGGCGAVAVLIGPDAPLVINMKTRASYACDVWDFFKPDMSSEYPRVNGQLSQTCYLRALDSCYNRLAAKKTAAXXXXXXXXXXXXDSEGEEGDGDKRAPFVLGDVEHVLCHSPYNKLVQKSFARMAFSDARRLKGTGKPLGEGQEEALGKWLDVPAEETYDDRDLEKALKAFAGVSSEAYRNKVEPGCRLSKQIGNTYTASVFANIVCLVCARGAAL-EGETALVFSYGSGAVATMYELHFRDTTAATATAAASATPTFSVAKIAETVGLSERLADRERLPPAELDAALAAR 906
            + V  KGPARP+GGCGAVA+L+GPDAP+V++ KT+A++A +VWDF+KP MSSEYP V+GQLS  CYL ALD CY  L  KK+ +                       +    +  V++ + HSPY+KLVQKSFAR+ F D+RRL  +G    + +  +L KW D P  ET +DR+L+   +    V+ E +R KV P C  S+Q+GN+YTA+V+ N+  LV  R   L +G   L+FSYGSG++A+M+ LH R+ +        SA   FS+  IA+++ L+ RLA R +  P E  A +  R
Sbjct:  151 IAVYAKGPARPSGGCGAVAMLVGPDAPMVLDCKTKATHAANVWDFYKPHMSSEYPTVDGQLSNACYLHALDECY-LLFCKKSKSLAAVD------------------QEEIGVASVDYAVFHSPYHKLVQKSFARLGFLDSRRLMSSGDEAAKEKYASLRKWADAPLHETLNDRELDLVAR---DVAREDFRVKVSPSCTTSQQLGNSYTAAVYMNLATLVYVRAKELAQGARVLLFSYGSGSLASMFVLHTREPSE-------SAKGKFSLENIAKSLNLTARLAYRTKKSPEEFTARMKLR 424          
BLAST of mRNA_Ecto-sp13_S_contig13728.2930.1 vs. uniprot
Match: D0NKN5_PHYIT (Hydroxymethylglutaryl-CoA synthase n=14 Tax=Phytophthora TaxID=4783 RepID=D0NKN5_PHYIT)

HSP 1 Score: 234 bits (597), Expect = 2.500e-64
Identity = 135/307 (43.97%), Postives = 188/307 (61.24%), Query Frame = 1
Query:    1 LIVPRKGPARPTGGCGAVAVLIGPDAPLVINMKTRASYACDVWDFFKPDMSSEYPRVNGQLSQTCYLRALDSCYNRLAAKKTAAXXXXXXXXXXXXDSEGEEGDGDKRAPFVLGDVEHVLCHSPYNKLVQKSFARMAFSDARRLKGTGKPLGEGQEEALGKWLDVPAEETYDDRDLEKALKAFAGVSSEAYRNKVEPGCRLSKQIGNTYTASVFANIVCLVCARGAALE-GETALVFSYGSGAVATMYELHFRDTTAATATAAASATPTFSVAKIAETVGLSERLADRERLPPAELDAALAARSHAH 918
            + V  KGPARP+GGCGAVA+LIGPDAP+V++ +T++++A +VWDF+KP++SSEYP V+G+LS +CYL ALD CY     K  AA                   DGD+  P V   V++ + HSPYNKLVQKSFAR+ F D+RRL  T     + +   L KW+  P +ET +DR+L+ A +   GV+ E ++ KV P C  S+Q+GN YTA+V+ N+  LV AR   L  G   L+FSYGSG++ATM+ L  R+ T +           FS+ KIA ++ L+ RL  R +  PAE  A +  R   +
Sbjct:  151 IAVYAKGPARPSGGCGAVAMLIGPDAPMVLDCRTKSTHATNVWDFYKPNVSSEYPTVDGKLSNSCYLHALDECYQLFCKKSEAAVKV----------------DGDE--PGVAS-VDYAVFHSPYNKLVQKSFARLLFLDSRRLLHTEDEAAKEKFAPLAKWVHTPLDETLNDRELDLAAR---GVAKEDFQTKVSPSCTTSQQLGNCYTAAVYMNLATLVHARAKDLALGSRVLMFSYGSGSIATMFVLRTREPTESK----------FSLEKIANSLDLTARLERRSKKTPAEYTARMKLRERTY 425          
BLAST of mRNA_Ecto-sp13_S_contig13728.2930.1 vs. uniprot
Match: A0A7S4VID6_9STRA (Hydroxymethylglutaryl-CoA synthase n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VID6_9STRA)

HSP 1 Score: 229 bits (583), Expect = 8.720e-64
Identity = 156/387 (40.31%), Postives = 199/387 (51.42%), Query Frame = 1
Query:   16 KGPARPTGGCGAVAVLIGPDAPLVIN-MKTRASYACDVWDFFKPDMSSEYPRVNGQLSQTCYLRALDSCYNRLAAKKTAAXXXXXXXXXXXXDSEGEEGDGDKRAPFVLGDVEHVLCHSPYNKLVQKSFARMAFSDARRLKGTG---------KPLGEGQE---EALGKWLDVPAEETYDDRDLEKALKAFAGVSSEAYRNKVEPGCRLSKQIGNTYTASVFANIVCLVC---ARGAALEGETALVFSYGSGAVATMYELHFRDTTAATATAAASATPTFSVAKIAETVGLSERLADRERLPPAELDAALAARSHAHALAXXXXXXXXXXAEGGGFVFVPGFPLD-RLFPGVFYLKGIGGDGVRGYGRRDKEAPRTRGGGALAPSLV 1125
            +GPARPT G GAVAVLIG DAPL  +  + R ++A +VWDFFKPD + EYP V+G LSQ CY RAL+ CYNR A K                         +    F     ++ + HSPYNKLVQKS+AR+   DARR    G         K   EG E   E L  WL  P EETY D+ LE  LK    +SS +++ ++      SK IGNTYTASVF  +  L+     RG    G+ A+VFSYGSGA+ATMY LH R+               FS+ ++A+ + L+ERL  RE + P+ELD AL  R+  H                 G  + P +P   RLFPG +YL GI     R Y R   +A       +LAP +V
Sbjct:  204 RGPARPTCGAGAVAVLIGRDAPLAFSDPRERTTHAANVWDFFKPDHTVEYPTVDGALSQVCYYRALEDCYNRFADKLDKISETTTKGSVK-----------EVAEHFDAESADYFVFHSPYNKLVQKSYARLFLLDARRRHEKGISFHREEEKKETKEGVEDSDEILAAWLTKPIEETYSDKALEATLKK---LSSSSFKQRLTDSNAASKAIGNTYTASVFFGLASLIDRAGGRGELTPGKKAVVFSYGSGALATMYRLHVREPVQTR----------FSIDRMAKALSLTERLTSREEVHPSELDHALETRARMHR---------------AGAPYSPVYPTTGRLFPGTYYLNGIDLKWTRTYSRVPLDAKMEPHETSLAPPIV 551          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13728.2930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXY3_ECTSI3.220e-26886.69Hydroxymethylglutaryl-CoA synthase n=1 Tax=Ectocar... [more]
A0A6H5JDP7_9PHAE1.960e-17484.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C9U2_9STRA5.060e-9450.13Hydroxymethylglutaryl-coenzyme A synthase N termin... [more]
A0A4D9DA31_9STRA2.180e-7242.22Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S2LNP4_9STRA3.140e-6934.23Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S1XK22_9STRA1.630e-6542.71Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A448ZF00_9STRA1.740e-6441.01Hydroxymethylglutaryl-CoA synthase n=1 Tax=Pseudo-... [more]
M4BVN1_HYAAE1.910e-6443.23Hydroxymethylglutaryl-CoA synthase n=1 Tax=Hyalope... [more]
D0NKN5_PHYIT2.500e-6443.97Hydroxymethylglutaryl-CoA synthase n=14 Tax=Phytop... [more]
A0A7S4VID6_9STRA8.720e-6440.31Hydroxymethylglutaryl-CoA synthase n=2 Tax=Ditylum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13728contigEcto-sp13_S_contig13728:45..3689 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score768.5
Seed ortholog evalue2.1e-219
Seed eggNOG ortholog2880.D7FXY3
Model size1617
KEGG rclassRC00004,RC00503
KEGG koko:K01641
KEGG ReactionR01978
KEGG Pathwayko00072,ko00280,ko00650,ko00900,ko01100,ko01110,ko01130,map00072,map00280,map00650,map00900,map01100,map01110,map01130
KEGG ModuleM00088,M00095
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.hydroxymethylglutaryl-CoA synthase activity
EggNOG OGsCOG3425@1,KOG1393@2759
EC2.3.3.10
Cds size1617
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462732.6407435-CDS-Ecto-sp13_S_contig13728:44..2121681462732.6407435-CDS-Ecto-sp13_S_contig13728:44..212Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13728 45..212 +
1681462732.6517816-CDS-Ecto-sp13_S_contig13728:664..10001681462732.6517816-CDS-Ecto-sp13_S_contig13728:664..1000Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13728 665..1000 +
1681462732.660711-CDS-Ecto-sp13_S_contig13728:1865..20831681462732.660711-CDS-Ecto-sp13_S_contig13728:1865..2083Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13728 1866..2083 +
1681462732.6698384-CDS-Ecto-sp13_S_contig13728:2794..36891681462732.6698384-CDS-Ecto-sp13_S_contig13728:2794..3689Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13728 2795..3689 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13728.2930.1prot_Ecto-sp13_S_contig13728.2930.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13728 45..3689 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13728.2930.1

>prot_Ecto-sp13_S_contig13728.2930.1 ID=prot_Ecto-sp13_S_contig13728.2930.1|Name=mRNA_Ecto-sp13_S_contig13728.2930.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=539bp
LIVPRKGPARPTGGCGAVAVLIGPDAPLVINMKTRASYACDVWDFFKPDM
SSEYPRVNGQLSQTCYLRALDSCYNRLAAKKTAAAAAAAAAAASAGDSEG
EEGDGDKRAPFVLGDVEHVLCHSPYNKLVQKSFARMAFSDARRLKGTGKP
LGEGQEEALGKWLDVPAEETYDDRDLEKALKAFAGVSSEAYRNKVEPGCR
LSKQIGNTYTASVFANIVCLVCARGAALEGETALVFSYGSGAVATMYELH
FRDTTAATATAAASATPTFSVAKIAETVGLSERLADRERLPPAELDAALA
ARSHAHALASSSSPSAGGGAEGGGFVFVPGFPLDRLFPGVFYLKGIGGDG
VRGYGRRDKEAPRTRGGGALAPSLVKKEEALGAGDREEEVATTTTIGSRT
ETSNSGEDDEEEEKARPVANGAVPAEAPSSDSSLANGAAKVAPPTAAAAA
AGNSKEETVLVGKEAPAAATATSPAAGGKLGALLLPRVVVTGVACGLPGQ
EKVFERDNLARLLAGQGCVKRLSAGSTAALVEKNVVQVK
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mRNA from alignment at Ecto-sp13_S_contig13728:45..3689+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13728.2930.1 ID=mRNA_Ecto-sp13_S_contig13728.2930.1|Name=mRNA_Ecto-sp13_S_contig13728.2930.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3645bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13728:45..3689+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTATCGTGCCGCGAAAGGGACCGGCACGTCCTACGGGGGGGTGCGGCGC GGTGGCTGTCCTGATAGGTCCAGACGCCCCGCTAGTGATCAACATGAAGA CCCGGGCATCGTACGCTTGCGACGTTTGGGACTTCTTCAAGCCAGACATG TCTTCGGAGTACCCGCGGGTGAGCCGGGCGAAGAGCAAAATTGTGACGCG CACGTGCGTGCGGCTGGTAGCGGCCTGGGGCTATAGGGGTGGTATCACTA TCTACAGGGGACAGAGGCTATTGGGGTGATTTAACGGACTAGTTTTTTTT TATTAAGGATGCCTGCTCTCTGATCGTGCTCCTGGTGCCATGCAGAGCGG ACGGCTGTTTCGCGAAGGACGTCCGCGAACGATGTATACATGGTAAAAGA AACTGCAAGGGCTGCATTCGTGGATATTGGGTATGCCTTCGGTGTCGTTG CGCGAGTATTCGCGTCTAACACGCCGGTGTGTCCGATGCGCGGCATTAAG TGGCAACCTGGTAGACTGGTCAGTGTACCCACCGGATGGACATCCGATCG CCCCTCCGCATCATCCCCTTCCAACGGTACCCCCCCCCCCATCCCCCTCG GTTTCCTCGTGCACGTGAAGGTGAATGGACAGCTTTCGCAGACGTGCTAC CTGCGCGCCCTCGACAGCTGCTACAACCGCCTTGCGGCGAAAAAGACGGC CGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCTCTGCCGGGGACTCGGAGG GGGAGGAGGGAGACGGGGACAAGCGGGCACCGTTCGTGCTAGGCGACGTC GAGCACGTGCTCTGCCACTCCCCTTACAACAAGCTGGTGCAGAAGTCGTT CGCGAGGATGGCGTTCTCCGACGCGAGACGCCTCAAGGGGACAGGCAAAC CCCTGGGGGAGGGGCAGGAGGAGGCGCTGGGAAAGTGGCTCGACGTGCCC GCCGAGGTGCGTGCGTACCGTCGTGTGGGGGCGCGGGTTTCCCGTGAGTG TTTCCTTCTGCAGTTGCGAGGAGGCCGCTCACAGCGGCTGAGCAATCGCT TGTACAGCAGTAGTTTTTTTTAGCGAAACAACGGTAAGAAAATCCGATGC CACGCCCGTGTATGGAAGGGCCACTAAAGAGCGTTATGTAGCCATCATTT TGCTTTCTGAGCGAGACCACCGCGCTGGCAAACCAAGCTGATGAACGAGA ATGTTGTTGAAAACGTGAGAGGAATCGTGAAGTGGCTGACCCCTCCCATG TACCACGTGCAATTGTTGCTTGGAACAGCGCTGGGGTGTTGGCGTGTACG GTCGTGTTGCATTGTTGTGATGATGTAGCAGGGAGTTATTCAGTAGGCCG GGTGCAAATGGCTGGAGGGGGAGCGCAGCCGCAGCGAGTTTGTCGGTTGT TTTCCTCCACTAGGGGGGAGCGTGCGCGTGCTTGCCCACGAAGGCGCGCG CACGCACCCGTCCGTGTCGCAACAATTGTTGAGCGAGTTGCAGCGATCAA GTTTCCTTTCAAAAGGGGATGCGATTTGTCCGGTCCGACCAATCGGTCCC GGTGGGGTCTAAAGTAACAGATCATCGTCTTCCTCTGCTGCTGCGGCTGC TTAATGCTCACTCACTGGAGGACTCACTCACTAGAGGACATCCGGGTTGT ACTAGAAACACCGAAGGCGGAGGTCCGGAAGAATGATGGCACACACCCGG CCTTCCGTCCTTTCCGTCCCTTGCTTCGGTCCCTCTCTGATCTACACGAA TCCACCCAAGTGACCATCCCTTTTTGGCGAGCGAACGCCCCCTCCCGTTG TTATCTTCTCCGCCCACGCAGGAGACGTACGACGACCGCGATCTCGAGAA AGCCCTCAAGGCGTTCGCCGGGGTGTCCTCGGAGGCATACCGGAACAAGG TCGAGCCGGGGTGCCGCCTTAGCAAACAGATCGGCAACACCTACACCGCC TCGGTGTTCGCCAACATCGTATGCCTGGTGTGCGCCCGCGGGGCGGCACT GGAGGGGGAGACCGCGCTCGTGTTCTCGTACGGCAGCGGGTGAGAGAAAA AAACGGTTGAAACTCTGTTATTGTCTTAAGTTCCCTGGAAATGTTATTTG AAGGCCGTTGAAAAACGTTTGGGCGTCTGGTGATATATGGTCATGCTTCT CTCGAACTGCCACTCTTGTTTGTGGAAGTATAGGGATCGTGAGGGTACTC GCGCTGGTTTCCGAGTGGCCCTTGAAGAGAGTGGTACGGTGTACGGGCAT ACTACCGACGTGTGTCGTTGCAAGAGTGTTTGTGTTCATCGTCTCTTTCG TCGTTGTCGTTGAGTAAGCAGTGTCGGAAAGAGTTGGAAGGCGAACCAAG CCGCAGACGACCGGAAGGACATCTAGAGGAAGGTCAAGGTACTGCAAGTT TGGATGCTGTAGGTGCGACGAGAGAGCTCTTTGCGCGTCGCGCGCTTGGA AAGGTCAAGAGTGATTGGGCTCGGAAGCGAAGATTACAGTCAACAGCGTG TGCGGCTGGTTTGTTCCTGCAAAGTGAAGCTGACTCGCCCCGGCAGTACA AATTCTATGGGAGTATCAAGGTGTTGTGAAACGCGCCCGGAGTCACCCAC AAAGAGCAAGGGATCTCACGCCGGTTCTCAGGTTTGTGGGAAAAGCACAC TCGAAACCCAACCCGTAGCAGACACGTAGCCCTGCGGTTTGTCGGCCACT TGTCCTTATGAACCCTCTTCCCCCAACGTTGTTGCTGCCCAAACTCTCAG CGCCGTGGCCACCATGTACGAGCTGCACTTCCGAGACACTACCGCTGCGA CGGCGACCGCTGCAGCATCAGCCACGCCCACCTTCAGCGTCGCCAAGATA GCGGAAACGGTGGGCCTGTCGGAGCGACTGGCCGATCGCGAGCGCTTGCC GCCGGCGGAGCTTGACGCCGCTCTCGCGGCGCGCTCCCACGCCCACGCTC TCGCGTCCTCTTCTTCGCCTTCCGCTGGAGGAGGAGCAGAGGGGGGTGGT TTTGTATTTGTCCCCGGGTTTCCGTTAGATAGGCTTTTCCCGGGGGTGTT CTACTTGAAAGGGATTGGTGGCGATGGGGTGAGGGGGTACGGTAGGCGGG ATAAGGAGGCGCCGCGGACGCGGGGCGGGGGGGCTCTCGCTCCGTCCCTT GTTAAAAAGGAGGAGGCATTGGGGGCTGGGGATAGGGAGGAGGAGGTTGC GACGACGACGACAATCGGGAGCAGGACGGAGACGAGCAACAGCGGCGAGG ACGACGAGGAGGAAGAGAAGGCGCGGCCGGTGGCAAACGGAGCCGTGCCC GCAGAAGCCCCTTCTTCGGACAGCAGCCTCGCGAATGGGGCCGCTAAAGT CGCTCCTCCGACGGCGGCGGCGGCGGCGGCGGGCAATAGCAAGGAGGAGA CCGTTCTTGTCGGGAAGGAAGCGCCGGCGGCGGCGACGGCCACGTCCCCG GCTGCTGGCGGCAAGCTGGGCGCGCTGCTGCTGCCGAGGGTGGTCGTGAC CGGCGTGGCGTGCGGGCTCCCCGGGCAGGAGAAGGTGTTCGAGCGGGACA ACCTGGCGAGGCTGCTGGCGGGGCAGGGTTGCGTGAAGAGGCTGAGCGCC GGCAGCACCGCGGCCTTGGTGGAGAAGAACGTCGTGCAGGTGAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13728:45..3689+

>mRNA_Ecto-sp13_S_contig13728.2930.1 ID=mRNA_Ecto-sp13_S_contig13728.2930.1|Name=mRNA_Ecto-sp13_S_contig13728.2930.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1617bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13728:45..3689+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTATCGTGCCGCGAAAGGGACCGGCACGTCCTACGGGGGGGTGCGGCGC
GGTGGCTGTCCTGATAGGTCCAGACGCCCCGCTAGTGATCAACATGAAGA
CCCGGGCATCGTACGCTTGCGACGTTTGGGACTTCTTCAAGCCAGACATG
TCTTCGGAGTACCCGCGGGTGAATGGACAGCTTTCGCAGACGTGCTACCT
GCGCGCCCTCGACAGCTGCTACAACCGCCTTGCGGCGAAAAAGACGGCCG
CCGCCGCCGCCGCCGCCGCCGCCGCCGCCTCTGCCGGGGACTCGGAGGGG
GAGGAGGGAGACGGGGACAAGCGGGCACCGTTCGTGCTAGGCGACGTCGA
GCACGTGCTCTGCCACTCCCCTTACAACAAGCTGGTGCAGAAGTCGTTCG
CGAGGATGGCGTTCTCCGACGCGAGACGCCTCAAGGGGACAGGCAAACCC
CTGGGGGAGGGGCAGGAGGAGGCGCTGGGAAAGTGGCTCGACGTGCCCGC
CGAGGAGACGTACGACGACCGCGATCTCGAGAAAGCCCTCAAGGCGTTCG
CCGGGGTGTCCTCGGAGGCATACCGGAACAAGGTCGAGCCGGGGTGCCGC
CTTAGCAAACAGATCGGCAACACCTACACCGCCTCGGTGTTCGCCAACAT
CGTATGCCTGGTGTGCGCCCGCGGGGCGGCACTGGAGGGGGAGACCGCGC
TCGTGTTCTCGTACGGCAGCGGCGCCGTGGCCACCATGTACGAGCTGCAC
TTCCGAGACACTACCGCTGCGACGGCGACCGCTGCAGCATCAGCCACGCC
CACCTTCAGCGTCGCCAAGATAGCGGAAACGGTGGGCCTGTCGGAGCGAC
TGGCCGATCGCGAGCGCTTGCCGCCGGCGGAGCTTGACGCCGCTCTCGCG
GCGCGCTCCCACGCCCACGCTCTCGCGTCCTCTTCTTCGCCTTCCGCTGG
AGGAGGAGCAGAGGGGGGTGGTTTTGTATTTGTCCCCGGGTTTCCGTTAG
ATAGGCTTTTCCCGGGGGTGTTCTACTTGAAAGGGATTGGTGGCGATGGG
GTGAGGGGGTACGGTAGGCGGGATAAGGAGGCGCCGCGGACGCGGGGCGG
GGGGGCTCTCGCTCCGTCCCTTGTTAAAAAGGAGGAGGCATTGGGGGCTG
GGGATAGGGAGGAGGAGGTTGCGACGACGACGACAATCGGGAGCAGGACG
GAGACGAGCAACAGCGGCGAGGACGACGAGGAGGAAGAGAAGGCGCGGCC
GGTGGCAAACGGAGCCGTGCCCGCAGAAGCCCCTTCTTCGGACAGCAGCC
TCGCGAATGGGGCCGCTAAAGTCGCTCCTCCGACGGCGGCGGCGGCGGCG
GCGGGCAATAGCAAGGAGGAGACCGTTCTTGTCGGGAAGGAAGCGCCGGC
GGCGGCGACGGCCACGTCCCCGGCTGCTGGCGGCAAGCTGGGCGCGCTGC
TGCTGCCGAGGGTGGTCGTGACCGGCGTGGCGTGCGGGCTCCCCGGGCAG
GAGAAGGTGTTCGAGCGGGACAACCTGGCGAGGCTGCTGGCGGGGCAGGG
TTGCGTGAAGAGGCTGAGCGCCGGCAGCACCGCGGCCTTGGTGGAGAAGA
ACGTCGTGCAGGTGAAG
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