mRNA_Ecto-sp13_S_contig13721.2927.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13721.2927.1
Unique NamemRNA_Ecto-sp13_S_contig13721.2927.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13721.2927.1 vs. uniprot
Match: D7G8T7_ECTSI (Protein-serine/threonine phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8T7_ECTSI)

HSP 1 Score: 371 bits (953), Expect = 2.070e-125
Identity = 182/184 (98.91%), Postives = 184/184 (100.00%), Query Frame = 1 
Query:    1 ASEKMQKEAAFAAAIMTDADVPLAEEINPDEIVVDSGYDGPRLGDDGEVTMDFCKAMMARFEEQKLIHKKYIVQILCQVYKALKDSPSLMRLHVPEEEGSHFTVCGDTHGQFYDVLNIFKLNGLPSAKNPYLFNGDFVDRGSFSLEVVTTFLALKLAEPEGIFLTRGNHESKNMNKIYGFEGEV 552
            ASEKMQKEAAFAAAIMTDADVPLAEEINPDEIVVDSGYDGPRLGDDGEVT+DFCKAMMARFEEQKLIHKKYIVQILCQVYKALKDSPSLMRLH+PEEEGSHFTVCGDTHGQFYDVLNIFKLNGLPSAKNPYLFNGDFVDRGSFSLEVVTTFLALKLAEPEGIFLTRGNHESKNMNKIYGFEGEV
Sbjct:  148 ASEKMQKEAAFAAAIMTDADVPLAEEINPDEIVVDSGYDGPRLGDDGEVTVDFCKAMMARFEEQKLIHKKYIVQILCQVYKALKDSPSLMRLHIPEEEGSHFTVCGDTHGQFYDVLNIFKLNGLPSAKNPYLFNGDFVDRGSFSLEVVTTFLALKLAEPEGIFLTRGNHESKNMNKIYGFEGEV 331
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13721.2927.1 vs. uniprot
Match: A0A835YLG0_9STRA (Protein-serine/threonine phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLG0_9STRA)

HSP 1 Score: 239 bits (611), Expect = 4.480e-74
Identity = 121/188 (64.36%), Postives = 144/188 (76.60%), Query Frame = 1 
Query:    1 ASEKMQKEAAFAAAIMTDADVPLAEEINPDEIVVDSGYDGPRLGDDGEVTMDFCKAMMARFEEQKLIHKKYIVQILCQVYKALKDSPSLMRLHVPEE----EGSHFTVCGDTHGQFYDVLNIFKLNGLPSAKNPYLFNGDFVDRGSFSLEVVTTFLALKLAEPEGIFLTRGNHESKNMNKIYGFEGEV 552
            A EK  +EAAFAAAIM + + PL   +   +I+VD  YDGP LG+D  VTMDF +AM+ RF  QKL+ K+Y+V +L Q +  L+ +PSLMRL VP +    +   FTVCGDTHGQFYD+L+IF+LNGLP+  NPYLFNGDFVDRGSFS EVVTT LALK+A PE I LTRGNHESKNMNKIYGFEGEV
Sbjct:  130 ACEKAAREAAFAAAIMQEEEEPLCTRVVVQDILVDPAYDGPALGEDLTVTMDFVRAMIERFRAQKLVAKRYVVAVLQQAFALLRATPSLMRLRVPADGADGKTGAFTVCGDTHGQFYDLLHIFELNGLPAPDNPYLFNGDFVDRGSFSFEVVTTLLALKVACPEAIHLTRGNHESKNMNKIYGFEGEV 317
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13721.2927.1 vs. uniprot
Match: F0X0B2_9STRA (Serine/threonine-protein phosphatase n=3 Tax=Albugo TaxID=65356 RepID=F0X0B2_9STRA)

HSP 1 Score: 230 bits (586), Expect = 2.320e-70
Identity = 110/185 (59.46%), Postives = 142/185 (76.76%), Query Frame = 1 
Query:    7 EKMQKEAAFAAAIMTDADVPLAEEINPDEIVVDSGYDGPRLGDDGEVTM-DFCKAMMARFEEQKLIHKKYIVQILCQVYKALKDSPSLMRLHVPEEEG--SHFTVCGDTHGQFYDVLNIFKLNGLPSAKNPYLFNGDFVDRGSFSLEVVTTFLALKLAEPEGIFLTRGNHESKNMNKIYGFEGEV 552
            +K+ KEAAFAAAI ++ ++P++E I+ D IV+DS YDGPRL DD + T+ DF   +M RF++ KL+H+KY++ IL ++ K     PSL+R+ +P+ +   +H TVCGDTHGQFYDV NIF LNG+PS +NPYLFNGDFVDRGSFS EVV T  A+KL  P  + L RGNHESKNMNKIYGFEGE+
Sbjct:  131 DKLVKEAAFAAAIQSERNLPISETIDVDSIVIDSSYDGPRLADDVQSTLPDFIPELMERFKKGKLLHRKYVILILLEMKKLFSSLPSLLRITLPDADADDAHITVCGDTHGQFYDVCNIFNLNGMPSEENPYLFNGDFVDRGSFSFEVVMTLFAMKLIYPRHVHLLRGNHESKNMNKIYGFEGEI 315
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13721.2927.1 vs. uniprot
Match: K3WPM4_GLOUD (Serine/threonine-protein phosphatase n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WPM4_GLOUD)

HSP 1 Score: 224 bits (570), Expect = 5.800e-68
Identity = 111/183 (60.66%), Postives = 134/183 (73.22%), Query Frame = 1 
Query:    7 EKMQKEAAFAAAIMTDADVPLAEEINPDEIVVDSGYDGPRLGDDGEVTM-DFCKAMMARFEEQKLIHKKYIVQILCQVYKALKDSPSLMRLHVPEEEGSHFTVCGDTHGQFYDVLNIFKLNGLPSAKNPYLFNGDFVDRGSFSLEVVTTFLALKLAEPEGIFLTRGNHESKNMNKIYGFEGEV 552
            EK+ KEAAFAAAI ++ ++PL+E I+ + IVVD  YDGP L  +   T  DF  A+M RF+  KL+H+KY++QIL  +       PSL+R+ +PE   +H TVCGDTHGQFYDV NIF LNG+PS  NPYLFNGDFVDRGSFS EVV T  A+KL  P  + L RGNHESKNMNKIYGFEGEV
Sbjct:  134 EKIIKEAAFAAAIQSERNLPLSETIDVNGIVVDPSYDGPHLAAEPTATKPDFVVALMERFKRGKLLHRKYVIQILLAMKNIFSSLPSLLRVSLPETADAHITVCGDTHGQFYDVCNIFALNGMPSETNPYLFNGDFVDRGSFSFEVVMTLFAMKLVFPNHVHLLRGNHESKNMNKIYGFEGEV 316
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13721.2927.1 vs. uniprot
Match: H3GA00_PHYRM (Serine/threonine-protein phosphatase n=8 Tax=Peronosporaceae TaxID=4777 RepID=H3GA00_PHYRM)

HSP 1 Score: 223 bits (569), Expect = 8.180e-68
Identity = 110/184 (59.78%), Postives = 141/184 (76.63%), Query Frame = 1 
Query:    7 EKMQKEAAFAAAIMTDADVPLAEEINPDEIVVDSGYDGPRLGDD-GEVTMDFCKAMMARFEEQKLIHKKYIVQILCQVYKALKDSPSLMRLHVPEEE-GSHFTVCGDTHGQFYDVLNIFKLNGLPSAKNPYLFNGDFVDRGSFSLEVVTTFLALKLAEPEGIFLTRGNHESKNMNKIYGFEGEV 552
            EK+ KEAAFAAAI ++ ++PL+E I+ + +VVD+ YDGP L +D  +   DF  A+M RF+  KL+H+K+++QIL ++ + L   PSL+R+ +P ++  +HFTVCGDTHGQFYDV NIF LNGLP   NPYLFNGDFVDRGSFS EVV T  A+KL  P+ + L RGNHESKNMNKIYGFEGEV
Sbjct:  133 EKIIKEAAFAAAIQSERNLPLSETIDLNSLVVDAAYDGPCLPEDISQTKADFIVALMDRFKRGKLLHRKFVIQILLKIKEMLCALPSLLRISLPSDDPDAHFTVCGDTHGQFYDVCNIFSLNGLPCETNPYLFNGDFVDRGSFSFEVVMTLFAMKLVYPQHVHLLRGNHESKNMNKIYGFEGEV 316
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13721.2927.1 vs. uniprot
Match: A0A2D4BSX5_PYTIN (Serine/threonine-protein phosphatase n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BSX5_PYTIN)

HSP 1 Score: 223 bits (567), Expect = 1.740e-67
Identity = 112/183 (61.20%), Postives = 134/183 (73.22%), Query Frame = 1 
Query:    7 EKMQKEAAFAAAIMTDADVPLAEEINPDEIVVDSGYDGPRLGDDGEVTM-DFCKAMMARFEEQKLIHKKYIVQILCQVYKALKDSPSLMRLHVPEEEGSHFTVCGDTHGQFYDVLNIFKLNGLPSAKNPYLFNGDFVDRGSFSLEVVTTFLALKLAEPEGIFLTRGNHESKNMNKIYGFEGEV 552
            EK+ KEAAFAAAI ++ + PL+E I+ D IVVD  YDGP L  D   T  DF  A+M RF+  KL+H+KY++QIL  +   L   PSL+R+ + +   +H TVCGDTHGQFYDV NIF LNG+PS  NPYLFNGDFVDRGSFS EVV T  A+KL  P+ + L RGNHESKNMNKIYGFEGEV
Sbjct:  137 EKIIKEAAFAAAIQSERNRPLSETIDVDSIVVDPAYDGPHLPADLSATKHDFLVALMDRFKRGKLLHRKYVIQILLAMKTMLSSLPSLLRVSLGDGADAHITVCGDTHGQFYDVCNIFALNGMPSESNPYLFNGDFVDRGSFSFEVVMTLFAMKLVYPQHVHLLRGNHESKNMNKIYGFEGEV 319
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13721.2927.1 vs. uniprot
Match: F0YIF4_AURAN (Serine/threonine-protein phosphatase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIF4_AURAN)

HSP 1 Score: 222 bits (565), Expect = 1.950e-67
Identity = 106/188 (56.38%), Postives = 140/188 (74.47%), Query Frame = 1 
Query:    7 EKMQKEAAFAAAIMTDADVPLAEEINPDEIVVDSGYDGPRLGDDGEVTMDFCKAMMARFEEQKLIHKKYIVQILCQVYKALKDSPSLMRLHVPEEEG------SHFTVCGDTHGQFYDVLNIFKLNGLPSAKNPYLFNGDFVDRGSFSLEVVTTFLALKLAEPEGIFLTRGNHESKNMNKIYGFEGEV 552
            EK  K+ AFA+AI +  D  ++  ++P ++VV+  YDGPRLGDDG +T +F + M+ RF +Q+L+HKKY++QIL      L+   SL+ L +PE +       +H+TVCGD HGQFYD+L+IF++NGLPSA NPY+FNGDFVDRGSFS+EVVT+  ALKL  P G+ L RGNHE+KNM KIYGFEGEV
Sbjct:  110 EKAVKQLAFASAIESSDDQCVSATVDPSQMVVEDAYDGPRLGDDGVMTDEFVEGMLERFRDQRLVHKKYVLQILLGAKALLQAEGSLVDLKIPETDADGDADKAHYTVCGDVHGQFYDLLHIFEINGLPSAANPYVFNGDFVDRGSFSVEVVTSLFALKLRHPGGVHLNRGNHETKNMTKIYGFEGEV 297
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13721.2927.1 vs. uniprot
Match: D0MY18_PHYIT (Serine/threonine-protein phosphatase n=40 Tax=Phytophthora TaxID=4783 RepID=D0MY18_PHYIT)

HSP 1 Score: 222 bits (566), Expect = 2.290e-67
Identity = 111/184 (60.33%), Postives = 141/184 (76.63%), Query Frame = 1 
Query:    7 EKMQKEAAFAAAIMTDADVPLAEEINPDEIVVDSGYDGPRLGDDGEVTM-DFCKAMMARFEEQKLIHKKYIVQILCQVYKALKDSPSLMRLHVPEEE-GSHFTVCGDTHGQFYDVLNIFKLNGLPSAKNPYLFNGDFVDRGSFSLEVVTTFLALKLAEPEGIFLTRGNHESKNMNKIYGFEGEV 552
            EK+ KEAAFAAAI ++ ++PL+E I+ + +VVD  YDGP L +D   T  DF  A+M RF+  KL+H+K+++QIL ++ + L   PSL+R+ +P ++  +HFTVCGDTHGQ+YDV NIF LNGLPS  NPYLFNGDFVDRGSFS EVV T  A+KL  P+ + L RGNHESKNMNKIYGFEGEV
Sbjct:  133 EKIIKEAAFAAAIQSERNLPLSETIDVNSLVVDPSYDGPCLPEDVSKTKPDFIVALMDRFKRGKLLHRKFVIQILLKLKEMLCALPSLLRVSLPTDDPDAHFTVCGDTHGQYYDVCNIFSLNGLPSESNPYLFNGDFVDRGSFSFEVVMTLFAMKLVYPQHVHLLRGNHESKNMNKIYGFEGEV 316
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13721.2927.1 vs. uniprot
Match: A0A7S0RRJ4_9CHLO (Protein-serine/threonine phosphatase n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RRJ4_9CHLO)

HSP 1 Score: 219 bits (558), Expect = 3.020e-66
Identity = 103/169 (60.95%), Postives = 132/169 (78.11%), Query Frame = 1 
Query:   52 DADVPLAEEINPDEIVVDSGYDGPRLG--DDGEVTMDFCKAMMARFEEQKLIHKKYIVQILCQVYKALKDSPSLMRLHVPEEEGSHFTVCGDTHGQFYDVLNIFKLNGLPSAKNPYLFNGDFVDRGSFSLEVVTTFLALKLAEPEGIFLTRGNHESKNMNKIYGFEGEV 552
            ++ +P +E+++  + VVDS Y GPRLG  D+ EVT+DF K MM  F+ Q+ IHK+Y  +IL QV + LK +P+LM +H+P ++  HFTVCGD HGQFYD+LNIF++NG+PS  NPYLFNGDFVDRGSFS+EV+ T  A+K   P  I+LTRGNHESKNMNKIYGFEGEV
Sbjct:  141 ESSMPASEQVDLSQYVVDSSYKGPRLGGLDEKEVTLDFVKQMMEEFKAQRTIHKRYAFEILLQVNQILKSTPTLMDIHIPNDK--HFTVCGDVHGQFYDLLNIFEINGMPSEDNPYLFNGDFVDRGSFSVEVIFTLFAIKTWCPTAIYLTRGNHESKNMNKIYGFEGEV 307
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13721.2927.1 vs. uniprot
Match: A0A0P1B6C1_PLAHL (Serine/threonine-protein phosphatase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B6C1_PLAHL)

HSP 1 Score: 215 bits (547), Expect = 1.550e-64
Identity = 109/184 (59.24%), Postives = 136/184 (73.91%), Query Frame = 1 
Query:    7 EKMQKEAAFAAAIMTDADVPLAEEINPDEIVVDSGYDGPRLGDDGEVTM-DFCKAMMARFEEQKLIHKKYIVQILCQVYKALKDSPSLMRLHVPEEE-GSHFTVCGDTHGQFYDVLNIFKLNGLPSAKNPYLFNGDFVDRGSFSLEVVTTFLALKLAEPEGIFLTRGNHESKNMNKIYGFEGEV 552
            EK+ KEAAFA AI ++ + PL+E I+ + +VVD  YDGP L +D   T  DF  A+M RF+  KL+H+K+++QIL ++ + L   PSL+ + +P ++  +HFTVCGDTHGQFYDV NIF LNGLPS  NPYLFNGDFVDRGSFS EVV T   +KL  P  + L RGNHESKNMNKIYGFEGEV
Sbjct:  133 EKIIKEAAFATAIQSERNRPLSETIDVNTLVVDPSYDGPCLPEDVTQTKPDFIVALMDRFKRGKLLHRKFVIQILLKLKEMLCALPSLVHVSLPADDPDAHFTVCGDTHGQFYDVCNIFSLNGLPSESNPYLFNGDFVDRGSFSFEVVMTLFVMKLVYPNHVHLLRGNHESKNMNKIYGFEGEV 316
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13721.2927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8T7_ECTSI2.070e-12598.91Protein-serine/threonine phosphatase n=1 Tax=Ectoc... [more]
A0A835YLG0_9STRA4.480e-7464.36Protein-serine/threonine phosphatase n=1 Tax=Tribo... [more]
F0X0B2_9STRA2.320e-7059.46Serine/threonine-protein phosphatase n=3 Tax=Albug... [more]
K3WPM4_GLOUD5.800e-6860.66Serine/threonine-protein phosphatase n=2 Tax=Pythi... [more]
H3GA00_PHYRM8.180e-6859.78Serine/threonine-protein phosphatase n=8 Tax=Peron... [more]
A0A2D4BSX5_PYTIN1.740e-6761.20Serine/threonine-protein phosphatase n=2 Tax=Pythi... [more]
F0YIF4_AURAN1.950e-6756.38Serine/threonine-protein phosphatase n=1 Tax=Aureo... [more]
D0MY18_PHYIT2.290e-6760.33Serine/threonine-protein phosphatase n=40 Tax=Phyt... [more]
A0A7S0RRJ4_9CHLO3.020e-6660.95Protein-serine/threonine phosphatase n=1 Tax=Pyram... [more]
A0A0P1B6C1_PLAHL1.550e-6459.24Serine/threonine-protein phosphatase n=1 Tax=Plasm... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13721contigEcto-sp13_S_contig13721:502..4636 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score367.9
Seed ortholog evalue2.8e-99
Seed eggNOG ortholog2880.D7G8T7
Preferred namePPP5C
Model size552
KEGG koko:K04460,ko:K11800
KEGG Pathwayko04010,map04010
Hectar predicted targeting categoryother localisation
GOsGO:0000165,GO:0000166,GO:0000278,GO:0000302,GO:0001101,GO:0001932,GO:0001933,GO:0001965,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004721,GO:0004722,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005819,GO:0005829,GO:0005856,GO:0005911,GO:0006139,GO:0006325,GO:0006351,GO:0006464,GO:0006468,GO:0006470,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006913,GO:0006950,GO:0006979,GO:0006996,GO:0007049,GO:0007154,GO:0007165,GO:0008017,GO:0008092,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009410,GO:0009416,GO:0009506,GO:0009628,GO:0009636,GO:0009639,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009967,GO:0009987,GO:0010017,GO:0010019,GO:0010033,GO:0010035,GO:0010038,GO:0010243,GO:0010288,GO:0010380,GO:0010467,GO:0010563,GO:0010605,GO:0010646,GO:0010647,GO:0010941,GO:0012505,GO:0014070,GO:0014072,GO:0015630,GO:0015631,GO:0016020,GO:0016021,GO:0016043,GO:0016070,GO:0016310,GO:0016311,GO:0016569,GO:0016570,GO:0016576,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016791,GO:0017076,GO:0017157,GO:0018130,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0022607,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0030054,GO:0030176,GO:0030425,GO:0030554,GO:0031072,GO:0031090,GO:0031224,GO:0031227,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031399,GO:0031400,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0032268,GO:0032269,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0032879,GO:0032991,GO:0033036,GO:0033143,GO:0033145,GO:0033365,GO:0033554,GO:0033993,GO:0034599,GO:0034613,GO:0034614,GO:0034641,GO:0034645,GO:0034654,GO:0035556,GO:0035639,GO:0035690,GO:0035970,GO:0036094,GO:0036211,GO:0036477,GO:0042175,GO:0042221,GO:0042325,GO:0042326,GO:0042493,GO:0042542,GO:0042578,GO:0042802,GO:0042995,GO:0043005,GO:0043025,GO:0043167,GO:0043168,GO:0043170,GO:0043204,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043278,GO:0043279,GO:0043412,GO:0043531,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044297,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044432,GO:0044444,GO:0044446,GO:0044451,GO:0044463,GO:0044464,GO:0045920,GO:0045936,GO:0046483,GO:0046677,GO:0046686,GO:0046906,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051048,GO:0051049,GO:0051051,GO:0051169,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051193,GO:0051195,GO:0051234,GO:0051246,GO:0051248,GO:0051259,GO:0051276,GO:0051291,GO:0051641,GO:0051649,GO:0051716,GO:0051879,GO:0055044,GO:0060255,GO:0060359,GO:0060548,GO:0060627,GO:0065003,GO:0065007,GO:0070013,GO:0070262,GO:0070301,GO:0070542,GO:0070727,GO:0070887,GO:0071214,GO:0071236,GO:0071241,GO:0071248,GO:0071276,GO:0071478,GO:0071482,GO:0071489,GO:0071704,GO:0071840,GO:0071944,GO:0072347,GO:0072686,GO:0080090,GO:0090056,GO:0090304,GO:0097159,GO:0097237,GO:0097367,GO:0097447,GO:0097458,GO:0097659,GO:0098827,GO:0101031,GO:0104004,GO:0120025,GO:0120038,GO:0140096,GO:1901214,GO:1901215,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901401,GO:1901402,GO:1901463,GO:1901464,GO:1901564,GO:1901576,GO:1901698,GO:1901700,GO:1901701,GO:1902325,GO:1903530,GO:1903531,GO:1904550,GO:1990635,GO:2000322,GO:2000324
Exons5
EggNOG free text desc.response to arachidonic acid
EggNOG OGsCOG0639@1,KOG0376@2759
EC3.1.3.16
Cds size540
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13721.2927.1prot_Ecto-sp13_S_contig13721.2927.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13721 502..4624 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462732.4817958-CDS-Ecto-sp13_S_contig13721:501..6341681462732.4817958-CDS-Ecto-sp13_S_contig13721:501..634Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13721 502..634 -
1681462732.491996-CDS-Ecto-sp13_S_contig13721:1241..13811681462732.491996-CDS-Ecto-sp13_S_contig13721:1241..1381Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13721 1242..1381 -
1681462732.5045846-CDS-Ecto-sp13_S_contig13721:3662..37321681462732.5045846-CDS-Ecto-sp13_S_contig13721:3662..3732Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13721 3663..3732 -
1681462732.5171552-CDS-Ecto-sp13_S_contig13721:4119..42311681462732.5171552-CDS-Ecto-sp13_S_contig13721:4119..4231Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13721 4120..4231 -
1681462732.5256536-CDS-Ecto-sp13_S_contig13721:4539..46241681462732.5256536-CDS-Ecto-sp13_S_contig13721:4539..4624Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13721 4540..4624 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462732.5339942-UTR-Ecto-sp13_S_contig13721:4624..46361681462732.5339942-UTR-Ecto-sp13_S_contig13721:4624..4636Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13721 4625..4636 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13721.2927.1

>prot_Ecto-sp13_S_contig13721.2927.1 ID=prot_Ecto-sp13_S_contig13721.2927.1|Name=mRNA_Ecto-sp13_S_contig13721.2927.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=180bp
MQKEAAFAAAIMTDADVPLAEEINPDEIVVDSGYDGPRLGDDGEVTMDFC
KAMMARFEEQKLIHKKYIVQILCQVYKALKDSPSLMRLHVPEEEGSHFTV
CGDTHGQFYDVLNIFKLNGLPSAKNPYLFNGDFVDRGSFSLEVVTTFLAL
KLAEPEGIFLTRGNHESKNMNKIYGFEGEV
back to top

mRNA from alignment at Ecto-sp13_S_contig13721:502..4636-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13721.2927.1 ID=mRNA_Ecto-sp13_S_contig13721.2927.1|Name=mRNA_Ecto-sp13_S_contig13721.2927.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13721:502..4636- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGAGCGAGAAGATGCAGAAGGAGGCCGCCTTCGCCGCGGCCATCATGAC
GGACGCGGACGTGCCCCTCGCGGAGGAGATCAACCCCGACGAGATCGGTA
CGTCTTCCGTCGCTATAATAGTGCTGCGTGTGTTGCTGTTGCCGTACTTC
AGCAGGTGGTACTGCTTTTGGGTGGTGGGGTTGCTGCTGTTGTCAACCAC
TTGGTCACTGTTTGGTTAGCGTGTTGCTAGTGCTGTGCTGTACAGTAGCA
GGTGGGTGTTTCTTTTGGTGGTCGGGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGTTGCCGGAGTTGGTAGATGTTGCTGTCACTAGTGATGG
GTGGCGAAAACCCCGGCACTAATTCATTTTTTTCTTTTTGTTCGACGAAA
CACAGTGGTGGATAGTGGGTACGACGGGCCACGTCTGGGGGACGATGGCG
AGGTGACGATGGACTTCTGCAAGGCCATGATGGCAAGATTCGAGGAGCAA
AAACTCATCCACAAGAAGTGAGTCATGTGACAGGGTTTCTCGGTGCGTGG
CCGCTAGAGTAGCAGCAGCAATGGAAGGAAAGGGGGCAAACGTGGAGCTT
TTTGTGTGAGTGTTTTTATTGTCGTAGCACCGACCGTGCGACATCCGGCT
GACCAAAGAAAAGAAGACGCCGGCCTCACTCTATGCGGTTGAAAACAGAA
CATGCTTGTACCGGCTATGCTCGTTTATCTTTCATGTTTAATGTCGACCG
CGCTAACCGACTGACCAGCCGGCGTCAGCGGCTGACCATCGAAAACCTTT
TGCAATTCATCACGTTGTGCAAATATAACTGATGTCTGTTCCCTCGTTTT
TGCTCGTGACATGACTTTTCTCCTTGTGGGACACGGTGGGATTCGGCTGG
CCAGGTACATTGTCCAAATCCTGTGTCAGGTGTACAAGGCACTGAAGGAC
TCGCCAAGCCTCATGCGACTACACGTAAGAGACAACAATTGCCGTGTTTT
TATCTTTGTTTATTTCTGTAGTTTTTTGTAGCGTACCACAAGAGTCCCAT
CTCTTTCACAGATAAGAGTCCATGAGTGAATTAATACTTTTTGTACGGTG
ACCATACTGTATTTATACGGTTCCCGAGGAGCAGACAGCGACGTTTTCCC
CTGTGGGCAACAGGCTCGGCAAGACAGGTAGGTGGCCATCTTGTTTGCTG
ACAAGTACGGTTGGATTGTTGAGTGCGTCCCGCTTGGGTGTTAATTTGAA
AAGTGGAGATAAGGTAATCTCCACTTGTGAATCGCCCCGTTGTTTGACTT
TGGGGTGTGGGGGTGTTTCGAAAGGGAGTTCTCATCACTGCCTCTAAGCC
TTTCTGCCAACACCAGATACCTGTAGCGTCTGGTTTAGGGGCCTTGGGCA
GTGAGTGGCGCTTGCGGCCCTCTGCCGCATCGCCCCCCCACTACAGCAAC
CCCTCCCCCCTCCCCACGCTCTCCCTCGATCGGCGGCACCCCTACGTCGT
GTTGGCTTCCGCTTCTTGCGGTACCGACGAAGGTTGCCGGCATTGTGTTG
TCCTCCGTGCGCGACCCTCAACTACCACCCACACGTTGCTGGCATCACTT
GGACCGCTGCGTGCGTGGACGCGTGGGATGGGGGAGGGGGATGTGTATTA
CTGCCGAGTTGTTTGTACGATCACAAAAGCAGTGGCCTTGCCAAACGAAG
AGAGAGATAGCCGTGGCTCCGACACAAAAGGGTGGGGTGACAAGGGCCCT
CGACCCTCTTTCACTTCTTATTCGGAGCCATCTAATATACCGGATTTAGA
TAGTGCCCTACTATGCTTTAGTGGGTCGATTCCGTTACAATCAATTACGA
CCCGCTTTATCTGAGCCCCCTCTTGTAAGGTACCCTCATATCGGAGCCAC
AACTGTAGCGAATTGTGTGGTGTTGGGTATTATTGACAGCAATGGCAGGG
ACGTCGCCCTCTTCCTCCCTTCCAGGCATTTGATCCAATCCCGGCGTTCC
CGCGGCCATCCTCTGCGCTAACCTCTCTGGTGGGAAAGGCTTTCCTCGCG
TCACATGAAGCATCGTCTTTACGTGTCATCCAGGGGGGAAAAATCTCCTT
TCCTGTCATGCGGCACATGCAGTAATTTTGACAAACGCATACTGTCATTG
AATCTTGCATGTTTTATTCGCACCAGCTTTCTCAAATATACAGGTCGCCA
TTTCACCTGTTTATTGGTTTCGCTTCTACAAGCATGGCGGAGTAAGCTGC
CAAAACCTTTCGGAACCGCGCTTGTCTCTTGGCTCAGCTCGAAGCAAGCG
CCAGGGTTCCGTGCCCACAGGCTAGCATTGTTATTTTTTGAAGCCCTGAT
AGGCTACAGTATTTAGTATTCCTTGTTGTAGAGCCCGGCTGAGCCATTGG
CCTGATTCTCCGCGCATCTTTCCTCGTGCAACTCTGGCGGCTCCTTCTTG
TAGAGCCCGGCCAAGCCATTGGCCTGATTCTCCGCGCATCTTTCCTCGTG
CAACTCTGGCGGGTTCCGATTCCCCCTCTTTTGCCAAAGCAGCTTTTGCT
CTCCCTCTCTCGTGCCCCGTTCGCACGCCCGCTTTACAGCCACGCGTACA
CACTCGTGGCTTTGTGGAGCATGATCACCAGCTTTTAGCTCTCTTGCGAG
CAAGGAAGGCTCAATTCGGCTGACCTCTTGTTGGACGAGGTCACTGGGCT
GTGTATGATATCTGCGTGCGACGAAGGGTAACGAAGTCATCATCCTCACG
CTCAGGGATGATGCCCTGTCCAGTCACCTCACCCAACAGAAGTCAGGAAT
TTTGAGCCGTAGAAGATGCCCCACAAAGCCATGAGTGTAGGCGCGGCTGC
AAAGTGCGTGTGCGTACGAGGCACACGAGAGAGGTTGAGCGAAAGCGTCT
ATGGCAAGAGAGGGGCGACCGGAATCCGCCCAAGCTGCACGGGGAGAGAC
TCAGAATGCGTGGATAATCAGGCGAATGGGCCCCCTTCCTTTTCAGGGCT
CCAATAGAAGAAGGGCTGGCCTGAGAGCCCATACGGAACCGGAAATTTGG
GGCCTGTCGAGCGCTGCCCCAGCCCCTTGTCACCGCAAAACAGACACACG
TACGTGTGCACCCCCCTTTCGGCAGAATCGCGTTCGCTTTTATTAGAAGG
CGTATTCGCGTTTTCTTATCCCGCTATGAGACGGACGTCTTTTCATTGGT
CAACGGGTTCACACGCAAATGAAGAACACGGACCGGCTTCCCAACGCGTG
CACAGGTACCGGAGGAAGAAGGGAGCCACTTTACCGTGTGCGGGGACACG
CACGGACAGTTTTACGACGTCCTCAACATCTTCAAGCTCAACGGCTTGCC
CTCGGCGAAAAACCCGTATCTCTTCAACGGGGACTTCGTGGACAGGTACG
TATTCTTAAGTACTCCGGAGTATGTATTTTTCTTGTGGCGCCCACACACC
CCTCCGTGCGAGCGCTTGTTGTGTGCATTCCGCAGATGTGCGCGTTACAT
TCACGTATGGGTTGGGAATGTTTTTTTGGTCGTTCACGCTACGGTGGTGT
TGAGGCCGACGTAGCCGTCCATTCGGTGCCCGCGATGTGCTCTTTGTTAT
TGCCAAGAGTAACCTTGACGACGCCCATCTAATCATGATCAGCGACCCAC
CTTCAGAATGCTGTGCCTTGCGCGTGTGTACGCGTGGCGTAGATACAAGC
GTCAGATTTGTTTTCGTCGATTCTGCTGTCTAGTGTTGGTGTTACGCAGC
CGTCCATTTGATGCCCGCGATGTGCTCTGTCCCGGTTTGTTGTTCGCCTG
GAGCAGCCGCGACAATGCCCATCTCATCCCGATAGGCGACCCAACTCCAG
CCAGGCGATGCCATGTATTGGAAATAGTACTTGTTTATCTTGCTGTGCTT
TTTAACTGGTCGGCACAGAAATAATAACTTGCTCGCGACGGCTGCTGCTG
CTGCTATTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTTCTTGGTCGTGC
AGGGGATCGTTTAGCTTGGAGGTAGTCACGACGTTCCTGGCCCTCAAGCT
GGCGGAGCCGGAGGGCATCTTCTTGACGCGGGGGAACCACGAAAGCAAGA
ACATGAACAAGATTTACGGGTTCGAGGGGGAGGTA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13721:502..4636-

>mRNA_Ecto-sp13_S_contig13721.2927.1 ID=mRNA_Ecto-sp13_S_contig13721.2927.1|Name=mRNA_Ecto-sp13_S_contig13721.2927.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=540bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13721:502..4636- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGAAGGAGGCCGCCTTCGCCGCGGCCATCATGACGGACGCGGACGT
GCCCCTCGCGGAGGAGATCAACCCCGACGAGATCGTGGTGGATAGTGGGT
ACGACGGGCCACGTCTGGGGGACGATGGCGAGGTGACGATGGACTTCTGC
AAGGCCATGATGGCAAGATTCGAGGAGCAAAAACTCATCCACAAGAAGTA
CATTGTCCAAATCCTGTGTCAGGTGTACAAGGCACTGAAGGACTCGCCAA
GCCTCATGCGACTACACGTACCGGAGGAAGAAGGGAGCCACTTTACCGTG
TGCGGGGACACGCACGGACAGTTTTACGACGTCCTCAACATCTTCAAGCT
CAACGGCTTGCCCTCGGCGAAAAACCCGTATCTCTTCAACGGGGACTTCG
TGGACAGGGGATCGTTTAGCTTGGAGGTAGTCACGACGTTCCTGGCCCTC
AAGCTGGCGGAGCCGGAGGGCATCTTCTTGACGCGGGGGAACCACGAAAG
CAAGAACATGAACAAGATTTACGGGTTCGAGGGGGAGGTA
back to top