mRNA_Ecto-sp13_S_contig13720.2926.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13720.2926.1
Unique NamemRNA_Ecto-sp13_S_contig13720.2926.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13720.2926.1 vs. uniprot
Match: A0A6H5JVQ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVQ5_9PHAE)

HSP 1 Score: 581 bits (1498), Expect = 2.160e-200
Identity = 373/570 (65.44%), Postives = 387/570 (67.89%), Query Frame = 1 
Query:    1 ATVVGTLSRQGGEEERQERNERKPGRSRETITPMHRKEDEKPSEEFWEHFFREENFQGKTLGDFLNDASPTPTAVKKREAWFDVPHRELFYKEEDLRCFRTNGTYIGDDCDPDDLEEEAAGTEQEPYQESEPPAVSVFFSADDATRVPRRKEAEHTECQEKGEWEEE-GEGRLPGTGSTGYRPAQTPEELCLGAAAFAAASAAYGRPSSS-------------------------GSGS------------------------------------KEDHRTGSSRNVNKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLAPTSSSLGRAAATKSVLGEIGVANSKDPMHKKLLEFRQKKSSTSAAVAGAGKSKAPTKGKRAVSKTTSVQTVAAIQAKPARGRPASTRGRTNVAS----------VRGSRSASLKGSVTSAAGAPARGMAGTANSTPHGVSLGVSSASIAGGPEAEAKKSVSSSTNVRKXXXXXXXXXXXXXXXXXXXXXXXXXGPKSAREQSTGVKRKGPAVLSSNVTDRTKR 1494
            A  VGTL RQGGEEER+ER   K  RS ET TPMHRKEDEKPSEEFWEHFFREENFQGKTLGDFLN+ASP+PTAVKKREAWFDVPHRELFYKEEDLRCFRTNGTYIGDDCDPDDLEEEAAGTEQEP QESEPPAVSV  SADDA RVPRRKE EHTECQE+GEWEEE G GRLPGTGSTG RPAQTPEELCLGAAAFAAASAAYGRPSSS                         GSG                                     K+D  TGSSRNVNKS                                              XXXXXXX VLAPTSSSLGRAA+TK VLGEIGVAN+KDPMH+KLLEFRQKKS+T+ AV GAG SKAPTKGK  VSKTTSV TVAAIQAK ARGRPASTRGRT+ AS          VRGSRSASL+GSV SAAGAPARGMAGTANSTP GVSLGVSSASIAG  EAE KKSV SS NV +                         GPKSARE+ST VKRKGP VLSSNVTDRTKR
Sbjct:   17 AIAVGTLGRQGGEEERKER---KADRSGETTTPMHRKEDEKPSEEFWEHFFREENFQGKTLGDFLNEASPSPTAVKKREAWFDVPHRELFYKEEDLRCFRTNGTYIGDDCDPDDLEEEAAGTEQEPDQESEPPAVSVSSSADDAIRVPRRKEVEHTECQEEGEWEEEEGGGRLPGTGSTGCRPAQTPEELCLGAAAFAAASAAYGRPSSSASTPVAPGGLALPSEGGGGTNGSSEGSGKLPLEGNAGKTRSSGRSXXXXXXXXXXXXXXXXXXXXKKDRPTGSSRNVNKSEGHGGLKQHQKQRHERVGGKRQRSAATGDGGLTEASVGDSSGDDPRXXXXXXXGVLAPTSSSLGRAASTKYVLGEIGVANNKDPMHRKLLEFRQKKSTTATAVPGAGTSKAPTKGKGEVSKTTSVHTVAAIQAKSARGRPASTRGRTSAASAHADAAPRAAVRGSRSASLRGSVASAAGAPARGMAGTANSTPRGVSLGVSSASIAGKAEAEHKKSVFSSANVPRSNPKTVSKPVTTVKRSVSGTGGGVGGPKSARERSTDVKRKGPTVLSSNVTDRTKR 583
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BLAST of mRNA_Ecto-sp13_S_contig13720.2926.1 vs. uniprot
Match: D7G7F5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F5_ECTSI)

HSP 1 Score: 538 bits (1385), Expect = 4.750e-183
Identity = 395/572 (69.06%), Postives = 406/572 (70.98%), Query Frame = 1 
Query:    1 ATVVGTLSRQGGEEERQERNERKPGRSRETITPMHRKEDEKPSEEFWEHFFREENFQGKTLGDFLNDASPTPTAVKKREAWFDVPHRELFYKEEDLRCFRTNGTYIGDDCDPDDLEEEAAGTEQEPYQESEPPAVSVFFSADDATRVPRRKEAEHTECQEKGEWEEEGEGRLPGTGSTGYRPAQTPEELCLGAAAFAAASAAYGRPSSS----------------------------------------------------------------GSGSKEDHRTGSSRNVNKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLAPTSSSLGRAAATKSVLGEIGVANSKDPMHKKLLEFRQKKSSTSAAVAGAGKSKAPTKGKRAVSKTTSVQTVAAIQAKPARGRPASTRGRTNVASVRGSRSASLKGSVTSAAGAPARGMAGTANSTPH----------GVSLGVSSASIAGGPEAEAKKSVSSSTNVRKXXXXXXXXXXXXXXXXXXXXXXXXXGPKSAREQSTGVKRKGPAVLSSNVTDRTKR 1494
            A  VGTL RQG EEER    ERKPGRS ET TPMHRKEDEKPSEEFWEHFFREENFQGKTLGDFLNDASPTPTAVKKREAWFDVPHRELFYKEEDLRCFRTNGTYIGDD DPDDLEEEA G+EQEP QESEPP VSV  SADDA RVPRRKEAEHT CQE+GEWEEEGEGRLPGTGST  RPAQTPEELCLGAAAFAAASAAYGRPSSS                                                                GSGSKE H TGSSRNV KSG   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLAPTSSSLGRAAATKSVL EIGVAN+KDPM KKL EFRQKKSST+ AVAGAG SKA TKGKRAVSKTTSVQ+VAA+QAKPARGRPASTRGRT+VAS     +                                     GVSLGVS+ASIAGG EAEAKK+VSSSTNV +                         GPKSAREQSTGVKRKGP VLSSNVTDRTKR
Sbjct:   33 AIAVGTLGRQGREEER---TERKPGRSGETTTPMHRKEDEKPSEEFWEHFFREENFQGKTLGDFLNDASPTPTAVKKREAWFDVPHRELFYKEEDLRCFRTNGTYIGDDWDPDDLEEEAVGSEQEPDQESEPPTVSVSSSADDAIRVPRRKEAEHTGCQEEGEWEEEGEGRLPGTGSTVNRPAQTPEELCLGAAAFAAASAAYGRPSSSSSTPLAPGGLALPSQGGGGTNGSSEGSGNLPVEGNRVGKTRSSGRYRSSTAAASCGRSVNGSSSGSGSKEGHPTGSSRNVKKSGGHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLAPTSSSLGRAAATKSVLDEIGVANNKDPMQKKLREFRQKKSSTATAVAGAGTSKASTKGKRAVSKTTSVQSVAAMQAKPARGRPASTRGRTSVASAHADAAPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVSLGVSTASIAGGAEAEAKKNVSSSTNVPRSNPKTVSKPVTTVKRSVSGNGSGVGGPKSAREQSTGVKRKGPTVLSSNVTDRTKR 601
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13720.2926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JVQ5_9PHAE2.160e-20065.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7F5_ECTSI4.750e-18369.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13720contigEcto-sp13_S_contig13720:783..3827 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1494
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-02_000060.1
Cds size1494
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462732.422914-CDS-Ecto-sp13_S_contig13720:782..14241681462732.422914-CDS-Ecto-sp13_S_contig13720:782..1424Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13720 783..1424 -
1681462732.4351075-CDS-Ecto-sp13_S_contig13720:2245..24711681462732.4351075-CDS-Ecto-sp13_S_contig13720:2245..2471Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13720 2246..2471 -
1681462732.446081-CDS-Ecto-sp13_S_contig13720:2651..31031681462732.446081-CDS-Ecto-sp13_S_contig13720:2651..3103Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13720 2652..3103 -
1681462732.4564486-CDS-Ecto-sp13_S_contig13720:3653..38271681462732.4564486-CDS-Ecto-sp13_S_contig13720:3653..3827Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13720 3654..3827 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13720.2926.1prot_Ecto-sp13_S_contig13720.2926.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13720 783..3827 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13720.2926.1

>prot_Ecto-sp13_S_contig13720.2926.1 ID=prot_Ecto-sp13_S_contig13720.2926.1|Name=mRNA_Ecto-sp13_S_contig13720.2926.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=498bp
ATVVGTLSRQGGEEERQERNERKPGRSRETITPMHRKEDEKPSEEFWEHF
FREENFQGKTLGDFLNDASPTPTAVKKREAWFDVPHRELFYKEEDLRCFR
TNGTYIGDDCDPDDLEEEAAGTEQEPYQESEPPAVSVFFSADDATRVPRR
KEAEHTECQEKGEWEEEGEGRLPGTGSTGYRPAQTPEELCLGAAAFAAAS
AAYGRPSSSGSGSKEDHRTGSSRNVNKSGGHGGPKQQQKQRHERVGGKRQ
RSAASGDGGSTGASVGDSSGDDPRKRRRAAGGVLAPTSSSLGRAAATKSV
LGEIGVANSKDPMHKKLLEFRQKKSSTSAAVAGAGKSKAPTKGKRAVSKT
TSVQTVAAIQAKPARGRPASTRGRTNVASVRGSRSASLKGSVTSAAGAPA
RGMAGTANSTPHGVSLGVSSASIAGGPEAEAKKSVSSSTNVRKNVPKTVS
KPVTTVKRNVSGNGGGVGGPKSAREQSTGVKRKGPAVLSSNVTDRTKR
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mRNA from alignment at Ecto-sp13_S_contig13720:783..3827-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13720.2926.1 ID=mRNA_Ecto-sp13_S_contig13720.2926.1|Name=mRNA_Ecto-sp13_S_contig13720.2926.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3045bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13720:783..3827- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGACCGTTGTCGGCACACTAAGCAGGCAAGGTGGAGAGGAAGAGCGACA
AGAGCGAAACGAGCGAAAGCCTGGCCGCTCACGAGAGACCATCACACCCA
TGCATCGCAAGGAAGACGAGAAACCCTCGGAGGAATTCTGGGAGCACTTC
TTCCGCGAAGAGAACTTCCAAGGCGTGAGTGGAGTAGTTGCGGATGCTTG
TTGTGCCGATGGTATGTGACGCAAGAAACCATCCGACGCATGAAATGTCG
CTCATACCCGAGCGCGACCGAGTCAGAATCGAACCCTCGTAACAGTTGCA
TGTATTTATTGCACCGTGTCCAAATTGGTGTCTTGCCCTCCCTCGCCCCC
TCTACTCTGGACGTGCTGTAAGACCTGGAATCAATTACGTGACGAGCTGT
CGTCCTTTCCCAAAAGCAATCATCTCAAGCAGGATTGAAATTTGCCTCCG
AACCTGCTCCCTACGGGAAATTAACCTGCCCCAGTGGTCGTCCTCCCAGC
CCCTATCCCACGCGCACAGCACCCGTTGATTTCTCTTCAGCGGCCTATTC
CCCTTGCTTATTCCCTGAGCACCAACCCCGCTCCCCACCACACCCTCCTG
ATTACTTATTCTCTACCCGCGCACACCACTCCCGGCTGAGATGACCGACG
AGGGAACGTCTTTCCACCTACATTCCGCGTTACCCGTTTCCCATTCGCTC
CTTCTTCCTGTGCGGTTCACTCAGAAAACTCTCGGAGACTTCCTGAACGA
TGCATCTCCCACTCCTACCGCTGTGAAAAAGAGAGAAGCATGGTTCGACG
TTCCCCATCGGGAGCTTTTCTACAAAGAAGAAGACCTCCGCTGCTTCCGC
ACGAACGGCACTTACATCGGAGACGACTGCGACCCGGATGATTTGGAGGA
AGAGGCCGCTGGAACCGAACAGGAACCGTACCAAGAATCAGAACCGCCGG
CAGTTTCTGTTTTCTTCTCCGCGGATGATGCAACTCGCGTTCCACGTAGG
AAAGAGGCGGAACACACGGAGTGCCAGGAAAAGGGGGAGTGGGAGGAGGA
GGGAGAGGGGCGGTTGCCGGGTACGGGCTCGACGGGGTATAGACCCGCGC
AGACGCCTGAAGAGTTGTGCCTCGGAGCCGCGGCTTTCGCTGCCGCTTCC
GCTGCTTACGGTAGGCCTTCTTCTTCGTCATGTACGCCTTTGGCCCCCGG
TGGGCTTGCGTTGCCGTCCAAGGGCGGTAGCGATACCAATGGTTCTTCAG
AAGGATCTGGGAACCTTCCTGTGGAAGGAAATCATGTCGGGAAAACTCGT
CCTTCTGGACGTTCTCGGAGTTCCACCGCTGCCGCTAGCAGCGGCAGAAG
TGACAGCGGCAGCGGCAGCAAAGAAGACCACCGGACGGGCAGCAGCAGGA
ATGTCAACAAGAGCGGAGGGCATGGCGGACCGAAGCAGCAACAGAAGCAG
CGTCACGAACGAGTGGGAGGGAAGAGGCAACGGAGCGCGGCGTCGGGCGA
TGGTGGGTCAACGGGGGCTTCGGTTGGTGATTCCAGTGGGGACGATCCGC
GGAAGAGAAGGAGGGCGGCAGGCGGCGTCTTGGTGAGTCCTTTTGTTCCT
GGTGAATGTTGTATCGCTCTAAGGTTGACAATCTCGGCATGCTTGCGTTT
TCTGGGCACGTGTGCCTTCCGCTGCGCACAACCTTGATACATTTCTACTT
CTCATCTTCCTGCAGCATCTTCTTTTTGTGTTTGGTGATGCATGTGCTGT
CGACGACCGTGCTATGCTCATGACGGTTTTGACAACCTACGCAAATACCA
TGTCGCGGAAATCTACGCGCGCAGGATGTCGCAGCAATCTATTTCTCCCA
CTAGAAACACGGCATCCCCTCACCTCTAGGTTTGTCTTTTGTTTACCCTG
GGTGTTTTGTCCTGATGCCCCGCTCAGGGTCATACGGAATTATTCCTCTC
CCCGAAGCCTTCCTGGCTTTGCTGAAGTGTGTAGGAAAGCATGTGTTGAT
ATTCACTTAAACGTTTGTGGTGGTGGTCGTGACTCTCCGAAGACAGGATG
CCGAAATACCTCCTTGATGTGTGCGGGTAGTGGAATTCTCCGATTATTCG
GGCGGCGTGAGTCGGAATGGTAACGGCTGTACTATCCCGTAGTGCTTTTA
TGTTTAACCCCAGGTAAAAAATGCGGTCTGCTAGGCCAGTATGCACCAAA
ATTGTGTCTCGTGGCGATGGGTATCATATGTCTGCGGTGGCTATAAGTTG
TGATTAGCAACCGACCTGTTAAACGTTTGGTTGGTGGGGCTTTTCTACTG
CAGAAACGACTCTCCTGGATAGAAGCAATGCGGACGACGACGTTTCCCAA
TGTGATGATGACGGCAACGATGTGAACTGCTGCACTGTATTATTCGTGTG
CAGGCACCGACGAGCAGTTCTCTCGGCAGAGCTGCGGCAACAAAGTCTGT
ACTGGGTGAAATCGGTGTCGCCAACAGCAAAGACCCGATGCACAAGAAGC
TTCTTGAGTTCCGCCAGAAGAAGTCCAGCACGTCGGCCGCCGTCGCAGGG
GCAGGCAAGAGCAAGGCACCAACCAAGGGTAAGAGGGCGGTATCCAAGAC
GACGTCCGTCCAGACCGTAGCGGCCATACAGGCAAAGCCGGCACGTGGAC
GGCCTGCCTCAACTCGAGGAAGGACTAATGTCGCCTCGGTCCGGGGGTCA
CGATCGGCATCTTTGAAGGGTTCGGTGACCTCGGCGGCGGGGGCACCGGC
GAGGGGGATGGCAGGGACGGCCAATTCCACCCCACATGGTGTAAGCTTGG
GTGTGAGCAGCGCTTCTATCGCCGGAGGTCCAGAGGCGGAGGCCAAGAAA
AGCGTCTCCTCGTCTACGAACGTTCGCAAGAACGTTCCCAAGACGGTGTC
GAAGCCGGTGACTACGGTGAAGCGCAACGTCAGCGGCAACGGCGGTGGTG
TTGGAGGGCCAAAGAGCGCGAGAGAGCAGTCGACTGGTGTGAAGCGGAAG
GGGCCGGCAGTGCTGTCAAGCAACGTGACAGACCGAACGAAAAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13720:783..3827-

>mRNA_Ecto-sp13_S_contig13720.2926.1 ID=mRNA_Ecto-sp13_S_contig13720.2926.1|Name=mRNA_Ecto-sp13_S_contig13720.2926.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1494bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13720:783..3827- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGACCGTTGTCGGCACACTAAGCAGGCAAGGTGGAGAGGAAGAGCGACA
AGAGCGAAACGAGCGAAAGCCTGGCCGCTCACGAGAGACCATCACACCCA
TGCATCGCAAGGAAGACGAGAAACCCTCGGAGGAATTCTGGGAGCACTTC
TTCCGCGAAGAGAACTTCCAAGGCAAAACTCTCGGAGACTTCCTGAACGA
TGCATCTCCCACTCCTACCGCTGTGAAAAAGAGAGAAGCATGGTTCGACG
TTCCCCATCGGGAGCTTTTCTACAAAGAAGAAGACCTCCGCTGCTTCCGC
ACGAACGGCACTTACATCGGAGACGACTGCGACCCGGATGATTTGGAGGA
AGAGGCCGCTGGAACCGAACAGGAACCGTACCAAGAATCAGAACCGCCGG
CAGTTTCTGTTTTCTTCTCCGCGGATGATGCAACTCGCGTTCCACGTAGG
AAAGAGGCGGAACACACGGAGTGCCAGGAAAAGGGGGAGTGGGAGGAGGA
GGGAGAGGGGCGGTTGCCGGGTACGGGCTCGACGGGGTATAGACCCGCGC
AGACGCCTGAAGAGTTGTGCCTCGGAGCCGCGGCTTTCGCTGCCGCTTCC
GCTGCTTACGGTAGGCCTTCTTCTTCCGGCAGCGGCAGCAAAGAAGACCA
CCGGACGGGCAGCAGCAGGAATGTCAACAAGAGCGGAGGGCATGGCGGAC
CGAAGCAGCAACAGAAGCAGCGTCACGAACGAGTGGGAGGGAAGAGGCAA
CGGAGCGCGGCGTCGGGCGATGGTGGGTCAACGGGGGCTTCGGTTGGTGA
TTCCAGTGGGGACGATCCGCGGAAGAGAAGGAGGGCGGCAGGCGGCGTCT
TGGCACCGACGAGCAGTTCTCTCGGCAGAGCTGCGGCAACAAAGTCTGTA
CTGGGTGAAATCGGTGTCGCCAACAGCAAAGACCCGATGCACAAGAAGCT
TCTTGAGTTCCGCCAGAAGAAGTCCAGCACGTCGGCCGCCGTCGCAGGGG
CAGGCAAGAGCAAGGCACCAACCAAGGGTAAGAGGGCGGTATCCAAGACG
ACGTCCGTCCAGACCGTAGCGGCCATACAGGCAAAGCCGGCACGTGGACG
GCCTGCCTCAACTCGAGGAAGGACTAATGTCGCCTCGGTCCGGGGGTCAC
GATCGGCATCTTTGAAGGGTTCGGTGACCTCGGCGGCGGGGGCACCGGCG
AGGGGGATGGCAGGGACGGCCAATTCCACCCCACATGGTGTAAGCTTGGG
TGTGAGCAGCGCTTCTATCGCCGGAGGTCCAGAGGCGGAGGCCAAGAAAA
GCGTCTCCTCGTCTACGAACGTTCGCAAGAACGTTCCCAAGACGGTGTCG
AAGCCGGTGACTACGGTGAAGCGCAACGTCAGCGGCAACGGCGGTGGTGT
TGGAGGGCCAAAGAGCGCGAGAGAGCAGTCGACTGGTGTGAAGCGGAAGG
GGCCGGCAGTGCTGTCAAGCAACGTGACAGACCGAACGAAAAGG
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