prot_Ecto-sp13_S_contig13717.2925.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig13717.2925.1
Unique Nameprot_Ecto-sp13_S_contig13717.2925.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length77
Homology
BLAST of mRNA_Ecto-sp13_S_contig13717.2925.1 vs. uniprot
Match: D7FWX1_ECTSI (RNA-binding protein SiahBP n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWX1_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 4.300e-39
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 0
Query:    1 RIYVGSLHYELKESDITSIFANFGALKLVDMSHDSSTGRHKGFCFIEYVDVKAADAALRAMNGFELAGRAIKV 73
            RIYVGSLHYELKESDITSIFANFGALKLVDMSHDSSTGRHKGFCFIEYVDVK+ADAALRAMNGFELAGRAIKV
Sbjct:  288 RIYVGSLHYELKESDITSIFANFGALKLVDMSHDSSTGRHKGFCFIEYVDVKSADAALRAMNGFELAGRAIKV 360          
BLAST of mRNA_Ecto-sp13_S_contig13717.2925.1 vs. uniprot
Match: A0A836CC18_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC18_9STRA)

HSP 1 Score: 106 bits (264), Expect = 3.440e-25
Identity = 49/73 (67.12%), Postives = 62/73 (84.93%), Query Frame = 0
Query:    1 RIYVGSLHYELKESDITSIFANFGALKLVDMSHDSSTGRHKGFCFIEYVDVKAADAALRAMNGFELAGRAIKV 73
            RIY+GSL+YEL+ESDI +IF  FG ++ VDMS D +TG+HKGFCFIEY++  +A+AAL +MNGFELAGR IKV
Sbjct:  120 RIYIGSLYYELQESDILAIFGAFGQIRAVDMSKDPATGKHKGFCFIEYMEPASAEAALNSMNGFELAGRPIKV 192          
BLAST of mRNA_Ecto-sp13_S_contig13717.2925.1 vs. uniprot
Match: A0A7S2WU02_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WU02_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 3.330e-22
Identity = 47/73 (64.38%), Postives = 58/73 (79.45%), Query Frame = 0
Query:    1 RIYVGSLHYELKESDITSIFANFGALKLVDMSHDSSTGRHKGFCFIEYVDVKAADAALRAMNGFELAGRAIKV 73
            RIYVGSL+Y+L E DI ++F +FG +  V MS + +TG+HKGFCFIEY +  AAD AL+AMNGFELAGR IKV
Sbjct:  139 RIYVGSLNYDLTEVDIRNVFGSFGNIIDVTMSFEPATGKHKGFCFIEYDNTPAADQALQAMNGFELAGRPIKV 211          
BLAST of mRNA_Ecto-sp13_S_contig13717.2925.1 vs. uniprot
Match: A0A7S2AH99_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AH99_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 3.600e-20
Identity = 44/73 (60.27%), Postives = 56/73 (76.71%), Query Frame = 0
Query:    1 RIYVGSLHYELKESDITSIFANFGALKLVDMSHDSSTGRHKGFCFIEYVDVKAADAALRAMNGFELAGRAIKV 73
            RIYVGSLHY+L E DI  +F  FG +  V MS++ +TG+ KG+CFIEY +  +A+ AL+AMNGFELAGR IKV
Sbjct:  112 RIYVGSLHYDLAEHDIRGVFEAFGKITEVTMSYEPATGKSKGYCFIEYENPNSANQALQAMNGFELAGRQIKV 184          
BLAST of mRNA_Ecto-sp13_S_contig13717.2925.1 vs. uniprot
Match: W7U4B1_9STRA (PolyU-binding-splicing factor PUF60 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U4B1_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 4.970e-20
Identity = 41/73 (56.16%), Postives = 56/73 (76.71%), Query Frame = 0
Query:    1 RIYVGSLHYELKESDITSIFANFGALKLVDMSHDSSTGRHKGFCFIEYVDVKAADAALRAMNGFELAGRAIKV 73
            RIYVGSLHY+LKE DI  +FA FGA++ ++MS +  TGR KGF F+++   ++A  AL+ MNGF+LAGR +KV
Sbjct:  215 RIYVGSLHYDLKEDDIRKVFAPFGAIRSINMSFEPGTGRSKGFAFVDFEQAESATMALQTMNGFQLAGRTLKV 287          
BLAST of mRNA_Ecto-sp13_S_contig13717.2925.1 vs. uniprot
Match: F0WWX1_9STRA (Poly(U)bindingsplicing factor PUF60 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WWX1_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.050e-19
Identity = 41/73 (56.16%), Postives = 58/73 (79.45%), Query Frame = 0
Query:    1 RIYVGSLHYELKESDITSIFANFGALKLVDMSHDSSTGRHKGFCFIEYVDVKAADAALRAMNGFELAGRAIKV 73
            R+YVG+L+YELKE DI ++FA FGA+  +D+S +  TGR KGFCF+E+ DV AA++A++ +NG  +A RAIKV
Sbjct:  137 RLYVGNLYYELKEDDIRNVFAPFGAIHSIDLSMEPGTGRSKGFCFLEFNDVLAAESAVQVLNGSTMANRAIKV 209          
BLAST of mRNA_Ecto-sp13_S_contig13717.2925.1 vs. uniprot
Match: A0A433QFW3_9FUNG (Uncharacterized protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433QFW3_9FUNG)

HSP 1 Score: 87.8 bits (216), Expect = 2.980e-19
Identity = 41/73 (56.16%), Postives = 55/73 (75.34%), Query Frame = 0
Query:    1 RIYVGSLHYELKESDITSIFANFGALKLVDMSHDSSTGRHKGFCFIEYVDVKAADAALRAMNGFELAGRAIKV 73
            RIYVGS+++EL E+ I ++F  FG++K V MS D +TG+HKGFCFIE+   +AA  AL AMNG +L GR +KV
Sbjct:  131 RIYVGSINFELNEAHIKAVFGQFGSIKSVSMSVDPATGKHKGFCFIEFETPEAAAMALEAMNGADLGGRQLKV 203          
BLAST of mRNA_Ecto-sp13_S_contig13717.2925.1 vs. uniprot
Match: A0A7S1H1Q7_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1H1Q7_HEMAN)

HSP 1 Score: 87.0 bits (214), Expect = 4.480e-19
Identity = 39/73 (53.42%), Postives = 56/73 (76.71%), Query Frame = 0
Query:    1 RIYVGSLHYELKESDITSIFANFGALKLVDMSHDSSTGRHKGFCFIEYVDVKAADAALRAMNGFELAGRAIKV 73
            R+YVGSL+Y++K++D+  IFA FG +K +DMS++ +TG+ KGF F+E+ D   A+A   AMNGF L GRAIK+
Sbjct:   76 RLYVGSLNYDIKDTDLRPIFAPFGPIKCIDMSYEPATGKSKGFGFVEFYDGLHAEACQMAMNGFNLGGRAIKI 148          
BLAST of mRNA_Ecto-sp13_S_contig13717.2925.1 vs. uniprot
Match: A0A433PH05_9FUNG (RRM domain-containing protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PH05_9FUNG)

HSP 1 Score: 87.0 bits (214), Expect = 5.250e-19
Identity = 41/73 (56.16%), Postives = 55/73 (75.34%), Query Frame = 0
Query:    1 RIYVGSLHYELKESDITSIFANFGALKLVDMSHDSSTGRHKGFCFIEYVDVKAADAALRAMNGFELAGRAIKV 73
            RIYVGS+++EL E+ I ++F  FG++K V MS D +TG+HKGFCFIE+   +AA  AL AMNG +L GR +KV
Sbjct:  128 RIYVGSINFELNEAHIKAVFGQFGSIKSVSMSVDPATGKHKGFCFIEFETPEAAAMALDAMNGADLGGRQLKV 200          
BLAST of mRNA_Ecto-sp13_S_contig13717.2925.1 vs. uniprot
Match: A0A7S3H5S2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H5S2_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 5.330e-19
Identity = 43/73 (58.90%), Postives = 56/73 (76.71%), Query Frame = 0
Query:    1 RIYVGSLHYELKESDITSIFANFGALKLVDMSHDSSTGRHKGFCFIEYVDVKAADAALRAMNGFELAGRAIKV 73
            R+YVGS+HY+LKESDI ++F+ FG +   +MS D  TGR KGFCFIE+ +   A+AA+  M+GFELAGR IKV
Sbjct:   87 RVYVGSIHYDLKESDIIALFSAFGKINKSEMSIDPLTGRTKGFCFIEFDEPAYAEAAM-VMDGFELAGRKIKV 158          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13717.2925.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWX1_ECTSI4.300e-3998.63RNA-binding protein SiahBP n=2 Tax=Ectocarpus TaxI... [more]
A0A836CC18_9STRA3.440e-2567.12Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2WU02_9STRA3.330e-2264.38Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2AH99_9STRA3.600e-2060.27Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
W7U4B1_9STRA4.970e-2056.16PolyU-binding-splicing factor PUF60 n=2 Tax=Monodo... [more]
F0WWX1_9STRA1.050e-1956.16Poly(U)bindingsplicing factor PUF60 putative n=1 T... [more]
A0A433QFW3_9FUNG2.980e-1956.16Uncharacterized protein n=1 Tax=Jimgerdemannia fla... [more]
A0A7S1H1Q7_HEMAN4.480e-1953.42Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
A0A433PH05_9FUNG5.250e-1956.16RRM domain-containing protein n=1 Tax=Endogone sp.... [more]
A0A7S3H5S2_9STRA5.330e-1958.90Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 1..74
e-value: 2.7E-22
score: 90.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 2..72
e-value: 1.1E-20
score: 73.2
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 1..77
score: 17.131
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..77
e-value: 4.4E-23
score: 83.6
NoneNo IPR availablePANTHERPTHR47330FAMILY NOT NAMEDcoord: 1..74
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 1..73

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13717contigEcto-sp13_S_contig13717:472..1311 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13717.2925.1mRNA_Ecto-sp13_S_contig13717.2925.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig13717 472..1311 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig13717.2925.1 ID=prot_Ecto-sp13_S_contig13717.2925.1|Name=mRNA_Ecto-sp13_S_contig13717.2925.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=77bp
RIYVGSLHYELKESDITSIFANFGALKLVDMSHDSSTGRHKGFCFIEYVD
VKAADAALRAMNGFELAGRAIKVCQLS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf