mRNA_Ecto-sp13_S_contig13717.2925.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13717.2925.1
Unique NamemRNA_Ecto-sp13_S_contig13717.2925.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13717.2925.1 vs. uniprot
Match: D7FWX1_ECTSI (RNA-binding protein SiahBP n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWX1_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 4.300e-39
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 1 
Query:    1 RIYVGSLHYELKESDITSIFANFGALKLVDMSHDSSTGRHKGFCFIEYVDVKAADAALRAMNGFELAGRAIKV 219
            RIYVGSLHYELKESDITSIFANFGALKLVDMSHDSSTGRHKGFCFIEYVDVK+ADAALRAMNGFELAGRAIKV
Sbjct:  288 RIYVGSLHYELKESDITSIFANFGALKLVDMSHDSSTGRHKGFCFIEYVDVKSADAALRAMNGFELAGRAIKV 360
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BLAST of mRNA_Ecto-sp13_S_contig13717.2925.1 vs. uniprot
Match: A0A836CC18_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC18_9STRA)

HSP 1 Score: 106 bits (264), Expect = 3.440e-25
Identity = 49/73 (67.12%), Postives = 62/73 (84.93%), Query Frame = 1 
Query:    1 RIYVGSLHYELKESDITSIFANFGALKLVDMSHDSSTGRHKGFCFIEYVDVKAADAALRAMNGFELAGRAIKV 219
            RIY+GSL+YEL+ESDI +IF  FG ++ VDMS D +TG+HKGFCFIEY++  +A+AAL +MNGFELAGR IKV
Sbjct:  120 RIYIGSLYYELQESDILAIFGAFGQIRAVDMSKDPATGKHKGFCFIEYMEPASAEAALNSMNGFELAGRPIKV 192
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BLAST of mRNA_Ecto-sp13_S_contig13717.2925.1 vs. uniprot
Match: A0A7S2WU02_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WU02_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 3.330e-22
Identity = 47/73 (64.38%), Postives = 58/73 (79.45%), Query Frame = 1 
Query:    1 RIYVGSLHYELKESDITSIFANFGALKLVDMSHDSSTGRHKGFCFIEYVDVKAADAALRAMNGFELAGRAIKV 219
            RIYVGSL+Y+L E DI ++F +FG +  V MS + +TG+HKGFCFIEY +  AAD AL+AMNGFELAGR IKV
Sbjct:  139 RIYVGSLNYDLTEVDIRNVFGSFGNIIDVTMSFEPATGKHKGFCFIEYDNTPAADQALQAMNGFELAGRPIKV 211
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BLAST of mRNA_Ecto-sp13_S_contig13717.2925.1 vs. uniprot
Match: A0A7S2AH99_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AH99_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 3.600e-20
Identity = 44/73 (60.27%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:    1 RIYVGSLHYELKESDITSIFANFGALKLVDMSHDSSTGRHKGFCFIEYVDVKAADAALRAMNGFELAGRAIKV 219
            RIYVGSLHY+L E DI  +F  FG +  V MS++ +TG+ KG+CFIEY +  +A+ AL+AMNGFELAGR IKV
Sbjct:  112 RIYVGSLHYDLAEHDIRGVFEAFGKITEVTMSYEPATGKSKGYCFIEYENPNSANQALQAMNGFELAGRQIKV 184
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BLAST of mRNA_Ecto-sp13_S_contig13717.2925.1 vs. uniprot
Match: W7U4B1_9STRA (PolyU-binding-splicing factor PUF60 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U4B1_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 4.970e-20
Identity = 41/73 (56.16%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:    1 RIYVGSLHYELKESDITSIFANFGALKLVDMSHDSSTGRHKGFCFIEYVDVKAADAALRAMNGFELAGRAIKV 219
            RIYVGSLHY+LKE DI  +FA FGA++ ++MS +  TGR KGF F+++   ++A  AL+ MNGF+LAGR +KV
Sbjct:  215 RIYVGSLHYDLKEDDIRKVFAPFGAIRSINMSFEPGTGRSKGFAFVDFEQAESATMALQTMNGFQLAGRTLKV 287
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BLAST of mRNA_Ecto-sp13_S_contig13717.2925.1 vs. uniprot
Match: F0WWX1_9STRA (Poly(U)bindingsplicing factor PUF60 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WWX1_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.050e-19
Identity = 41/73 (56.16%), Postives = 58/73 (79.45%), Query Frame = 1 
Query:    1 RIYVGSLHYELKESDITSIFANFGALKLVDMSHDSSTGRHKGFCFIEYVDVKAADAALRAMNGFELAGRAIKV 219
            R+YVG+L+YELKE DI ++FA FGA+  +D+S +  TGR KGFCF+E+ DV AA++A++ +NG  +A RAIKV
Sbjct:  137 RLYVGNLYYELKEDDIRNVFAPFGAIHSIDLSMEPGTGRSKGFCFLEFNDVLAAESAVQVLNGSTMANRAIKV 209
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BLAST of mRNA_Ecto-sp13_S_contig13717.2925.1 vs. uniprot
Match: A0A433QFW3_9FUNG (Uncharacterized protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433QFW3_9FUNG)

HSP 1 Score: 87.8 bits (216), Expect = 2.980e-19
Identity = 41/73 (56.16%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:    1 RIYVGSLHYELKESDITSIFANFGALKLVDMSHDSSTGRHKGFCFIEYVDVKAADAALRAMNGFELAGRAIKV 219
            RIYVGS+++EL E+ I ++F  FG++K V MS D +TG+HKGFCFIE+   +AA  AL AMNG +L GR +KV
Sbjct:  131 RIYVGSINFELNEAHIKAVFGQFGSIKSVSMSVDPATGKHKGFCFIEFETPEAAAMALEAMNGADLGGRQLKV 203
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BLAST of mRNA_Ecto-sp13_S_contig13717.2925.1 vs. uniprot
Match: A0A7S1H1Q7_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1H1Q7_HEMAN)

HSP 1 Score: 87.0 bits (214), Expect = 4.480e-19
Identity = 39/73 (53.42%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:    1 RIYVGSLHYELKESDITSIFANFGALKLVDMSHDSSTGRHKGFCFIEYVDVKAADAALRAMNGFELAGRAIKV 219
            R+YVGSL+Y++K++D+  IFA FG +K +DMS++ +TG+ KGF F+E+ D   A+A   AMNGF L GRAIK+
Sbjct:   76 RLYVGSLNYDIKDTDLRPIFAPFGPIKCIDMSYEPATGKSKGFGFVEFYDGLHAEACQMAMNGFNLGGRAIKI 148
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BLAST of mRNA_Ecto-sp13_S_contig13717.2925.1 vs. uniprot
Match: A0A433PH05_9FUNG (RRM domain-containing protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PH05_9FUNG)

HSP 1 Score: 87.0 bits (214), Expect = 5.250e-19
Identity = 41/73 (56.16%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:    1 RIYVGSLHYELKESDITSIFANFGALKLVDMSHDSSTGRHKGFCFIEYVDVKAADAALRAMNGFELAGRAIKV 219
            RIYVGS+++EL E+ I ++F  FG++K V MS D +TG+HKGFCFIE+   +AA  AL AMNG +L GR +KV
Sbjct:  128 RIYVGSINFELNEAHIKAVFGQFGSIKSVSMSVDPATGKHKGFCFIEFETPEAAAMALDAMNGADLGGRQLKV 200
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BLAST of mRNA_Ecto-sp13_S_contig13717.2925.1 vs. uniprot
Match: A0A7S3H5S2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H5S2_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 5.330e-19
Identity = 43/73 (58.90%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:    1 RIYVGSLHYELKESDITSIFANFGALKLVDMSHDSSTGRHKGFCFIEYVDVKAADAALRAMNGFELAGRAIKV 219
            R+YVGS+HY+LKESDI ++F+ FG +   +MS D  TGR KGFCFIE+ +   A+AA+  M+GFELAGR IKV
Sbjct:   87 RVYVGSIHYDLKESDIIALFSAFGKINKSEMSIDPLTGRTKGFCFIEFDEPAYAEAAM-VMDGFELAGRKIKV 158
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13717.2925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWX1_ECTSI4.300e-3998.63RNA-binding protein SiahBP n=2 Tax=Ectocarpus TaxI... [more]
A0A836CC18_9STRA3.440e-2567.12Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2WU02_9STRA3.330e-2264.38Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2AH99_9STRA3.600e-2060.27Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
W7U4B1_9STRA4.970e-2056.16PolyU-binding-splicing factor PUF60 n=2 Tax=Monodo... [more]
F0WWX1_9STRA1.050e-1956.16Poly(U)bindingsplicing factor PUF60 putative n=1 T... [more]
A0A433QFW3_9FUNG2.980e-1956.16Uncharacterized protein n=1 Tax=Jimgerdemannia fla... [more]
A0A7S1H1Q7_HEMAN4.480e-1953.42Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
A0A433PH05_9FUNG5.250e-1956.16RRM domain-containing protein n=1 Tax=Endogone sp.... [more]
A0A7S3H5S2_9STRA5.330e-1958.90Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13717contigEcto-sp13_S_contig13717:472..1311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score146.0
Seed ortholog evalue7.4e-33
Seed eggNOG ortholog2880.D7FWX1
Preferred namePUF60
Model size231
KEGG koko:K11798,ko:K12811,ko:K12838
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000245,GO:0000375,GO:0000377,GO:0000380,GO:0000381,GO:0000398,GO:0001558,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003727,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006355,GO:0006366,GO:0006376,GO:0006396,GO:0006397,GO:0006401,GO:0006417,GO:0006725,GO:0006807,GO:0007276,GO:0007281,GO:0007282,GO:0007623,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0008285,GO:0008356,GO:0008380,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009299,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0010638,GO:0016043,GO:0016070,GO:0016071,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030054,GO:0030154,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031974,GO:0031981,GO:0032204,GO:0032206,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032991,GO:0033043,GO:0033044,GO:0034248,GO:0034250,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0042127,GO:0042162,GO:0042752,GO:0042789,GO:0042802,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0043487,GO:0043488,GO:0043565,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045727,GO:0045893,GO:0045926,GO:0045935,GO:0046483,GO:0046700,GO:0048024,GO:0048468,GO:0048511,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0050684,GO:0050789,GO:0050790,GO:0050794,GO:0051052,GO:0051054,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051301,GO:0051338,GO:0051347,GO:0051704,GO:0051972,GO:0051973,GO:0060255,GO:0061013,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097167,GO:0097659,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902680,GO:1903311,GO:1903506,GO:1903508,GO:1904353,GO:1904355,GO:1905661,GO:1905663,GO:1990904,GO:2000112,GO:2000278,GO:2000573,GO:2001141,GO:2001252
Exons2
EggNOG free text desc.RNA splicing
EggNOG OGsKOG0124@1,KOG0124@2759
EC3.6.4.13
Cds size231
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462732.3735564-CDS-Ecto-sp13_S_contig13717:471..5211681462732.3735564-CDS-Ecto-sp13_S_contig13717:471..521Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13717 472..521 +
1681462732.3918538-CDS-Ecto-sp13_S_contig13717:1130..13111681462732.3918538-CDS-Ecto-sp13_S_contig13717:1130..1311Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13717 1131..1311 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13717.2925.1prot_Ecto-sp13_S_contig13717.2925.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13717 472..1311 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13717.2925.1

>prot_Ecto-sp13_S_contig13717.2925.1 ID=prot_Ecto-sp13_S_contig13717.2925.1|Name=mRNA_Ecto-sp13_S_contig13717.2925.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=77bp
RIYVGSLHYELKESDITSIFANFGALKLVDMSHDSSTGRHKGFCFIEYVD
VKAADAALRAMNGFELAGRAIKVCQLS
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mRNA from alignment at Ecto-sp13_S_contig13717:472..1311+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13717.2925.1 ID=mRNA_Ecto-sp13_S_contig13717.2925.1|Name=mRNA_Ecto-sp13_S_contig13717.2925.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=840bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13717:472..1311+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCATCTATGTTGGCTCCCTCCACTACGAGCTGAAGGAGAGTGACATCAC
GTGAGTTATTTTGTTTTTTTCTTTTGTTGACGTGGAAAAAAAATCCGTAT
CGACCAGCAGACTGCTGTAGGTGCTTATGAGGAAAGGTTGAACATCCCTT
GTACTTGGATTTATTTGTATGTGTTTTGTACTTGGATGCCCGCAGCAGTT
GCATCGACCACCCTCATGCGCCATCTTCGCCCACCAATCGTGTTGTAAGC
GGAGGTTTCTTGCTTTCAACGTTCTCGGAGACAGCCAGCCTCACTGTATA
TCCCTTCGCAGTCTGCGTGCGCGCGGCGGCTGTGTGCTTTGGTTTGTAGC
TGAGTCAACGGTCAAGCGCCTACGCTACACCATGCACCTTTGTCGTGCTC
ATGCTTCCCGGACTCTCTTTTGGCTGTTGAGCACCGCAGTTTGTCCCGCA
GACTATAATAAACTATCTGAGAGTGTATCGGCCGAACCAAAGTGTTGCAA
CGGAACTGTGTCGCCCCTTGTTTGTTGCCGTGAAAGACCCTGCCACAAAT
AAAAACTGACCCCCCCCCCCCCATTCCTCTTCCCTCTTGGCATGTGTGTT
CGCGCCGTGCGATCGGCGTGTCTGGCGGCTTTGCCTGTCCGACGCGCGTG
GACACAAAGGTCAATATTTGCGAACTTCGGGGCGCTCAAGCTGGTGGATA
TGTCCCACGACAGTTCCACCGGTCGGCATAAGGGTTTCTGCTTCATCGAG
TACGTGGACGTGAAGGCGGCTGACGCGGCGCTGAGGGCCATGAACGGCTT
CGAGCTCGCCGGCCGCGCCATCAAGGTGTGCCAGCTATCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13717:472..1311+

>mRNA_Ecto-sp13_S_contig13717.2925.1 ID=mRNA_Ecto-sp13_S_contig13717.2925.1|Name=mRNA_Ecto-sp13_S_contig13717.2925.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=231bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13717:472..1311+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCATCTATGTTGGCTCCCTCCACTACGAGCTGAAGGAGAGTGACATCAC
GTCAATATTTGCGAACTTCGGGGCGCTCAAGCTGGTGGATATGTCCCACG
ACAGTTCCACCGGTCGGCATAAGGGTTTCTGCTTCATCGAGTACGTGGAC
GTGAAGGCGGCTGACGCGGCGCTGAGGGCCATGAACGGCTTCGAGCTCGC
CGGCCGCGCCATCAAGGTGTGCCAGCTATCC
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