mRNA_Ecto-sp13_S_contig13714.2923.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13714.2923.1
Unique NamemRNA_Ecto-sp13_S_contig13714.2923.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13714.2923.1 vs. uniprot
Match: A0A6H5K928_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K928_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 6.600e-37
Identity = 105/207 (50.72%), Postives = 119/207 (57.49%), Query Frame = 3 
Query:  354 GSDAAAAYKSIGGAPRKLLRDELLAMFDGKTEHGPTQEQHQLSSPLQRNPFQECANLFWLGQPNRALRVLCYGLVASGHHHDACAAPA--------APTVEGGGFPQQWQRIACRVSAYATAPST-SR*RPSSCPSS--------GRSRAEAYPLATGRR*RRRPAAVATGRRETSC*STRGGLRQHLARNGMEVSALEVLGSDASG 923
            G +AAAAYKSIGGA RKLLRDELL +FDG+TEHGPTQ Q + S  LQRNPF ECA LFWLGQP+RALR LC GLVASGH   + AAPA        A  + G G   +   IA R    +      SR +P+   S+        G   A   PL   RR     AAV            R    +HLARNGME+SALEVLGSDA G
Sbjct: 2094 GGNAAAAYKSIGGASRKLLRDELLPVFDGETEHGPTQGQQRSSFRLQRNPFLECATLFWLGQPDRALRALCRGLVASGHQDGSYAAPAGGFSSTVAADNLSGLGLCNRAIDIAMRPFLVSKLRQIESRGKPAGDRSTVAAAVAGGGGDWAAGDPLINARR----AAAV------------RLATAEHLARNGMEISALEVLGSDAGG 2284
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BLAST of mRNA_Ecto-sp13_S_contig13714.2923.1 vs. uniprot
Match: D7G803_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G803_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 3.000e-35
Identity = 129/278 (46.40%), Postives = 143/278 (51.44%), Query Frame = 2 
Query:   80 MARHRIAGRLLIASIFVGQAVVTLGFIAPKAFVAVGRSAGEGFLGEILQ-KGLGRGQSCMVSSRTDRGVDDGATMRLGVKAKASTAGGKVGRRKRCSRCVQVYRGSA*EAAAGRATCHV*WQDRAWANAGTASIIIPSPAQPIPGVRQPVLAGAAEPSATGAVLRPRRLRPPSRRLRRPRGSDCRGGGVSSTVAADSLSGLGLCNRAIDVAMTPFLVSKLRQIESRGIPARDGSAVAAXXXXXXXXXXXXXXXXXXXXXXXAPGSERDGSLGAGGARE 910
            MA HR+A  LL+AS+FV Q VVTLGFIAPKA VAVG SAGEGFLGE LQ KGLG G +          V  G    LG         G    ++R S  +Q  R    E A              W      ++ +        G      A  A P+  G                          GVSSTVAA +LSGL LCNRAI+VAM PFLVSKLRQIESRG PARD SAVA XXXXXXXXXXXX           APG ERDG+LGAGGA E
Sbjct:    1 MAPHRLAALLLVASVFVCQVVVTLGFIAPKASVAVGSSAGEGFLGETLQEKGLGAGTALWFLRGRTAEVVMGLLCALGH--------GPTQGQQRSSSPLQ--RNPFQEFAT-----------LFWLGQPDRALWVLCYGLVASGHHDDPYAAPAAPTVEGK-------------------------GVSSTVAAANLSGLDLCNRAIEVAMRPFLVSKLRQIESRGKPARDRSAVAXXXXXXXXXXXXXPLLINARRAAAAPGPERDGNLGAGGAWE 232
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BLAST of mRNA_Ecto-sp13_S_contig13714.2923.1 vs. uniprot
Match: D7G824_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G824_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 5.400e-34
Identity = 96/196 (48.98%), Postives = 110/196 (56.12%), Query Frame = 3 
Query:  369 AAYKSIGGAPRKLLRDELLAMFDGKTEHGPTQEQHQLSSPLQRNPFQECANLFWLGQPNRALRVLCYGLVASGHHHDACAAPA--------APTVEGGGFPQQWQRIACR---VSAYATAPSTSR*RPSSCPSSGRSRAEAYPLATGRR*RRRPAAVATGRRETSC*STRGGLRQHLARNGMEVSALEVLGSDASG 923
            AAYKSIGGA RKLLRDELL +FDG+T  GPTQ Q + SSPLQRNPF ECA LFWLGQP+RALR LC GLVASGH   + AAPA        A  + G G   +   +A R   VS      S  +      P+  RS                   +   RR  +    R    +HLARNGME+SALEVLGSDA G
Sbjct: 2007 AAYKSIGGASRKLLRDELLPVFDGETGDGPTQGQQRSSSPLQRNPFLECATLFWLGQPDRALRALCRGLVASGHQGGSYAAPAGGISSTVAADNLSGLGLCNRAIDVAMRPFLVSKLRQIESRGK------PARDRSTVAXXXXXXXXXXXXGDPLLINARRAAA---VRLATAEHLARNGMEISALEVLGSDAGG 2193
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BLAST of mRNA_Ecto-sp13_S_contig13714.2923.1 vs. uniprot
Match: A0A6H5JLH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH6_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 6.850e-27
Identity = 61/85 (71.76%), Postives = 69/85 (81.18%), Query Frame = 2 
Query:   80 MARHRIAGRLLIASIFVGQAVVTLGFIAPKAFVAVGRSAGEGFLGEILQ-KGLGRGQSCMVSSRTDRGVDDGATMRLGVKAKAST 331
            MA HR+A  LL+AS+FV QAVVTLGFI+PKA VAVGR+AGE F+GE LQ KGLGRGQSCMVSSR D    DGATMRLGV   A++
Sbjct:    1 MAPHRLAALLLVASVFVCQAVVTLGFISPKASVAVGRTAGEAFVGETLQQKGLGRGQSCMVSSRPDNRGGDGATMRLGVSMGAAS 85
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BLAST of mRNA_Ecto-sp13_S_contig13714.2923.1 vs. uniprot
Match: D7G820_ECTSI (UDP-sulfoquinovose: diacylglycerol alpha-sulfoquinovosyltransferase SQD2, N-terminal, family GT4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G820_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 1.580e-24
Identity = 60/85 (70.59%), Postives = 65/85 (76.47%), Query Frame = 2 
Query:   80 MARHRIAGRLLIASIFVGQAVVTLGFIAPKAFVAVGRSAGEGFLGEILQ-KGLGRGQSCMVSSRTDRGVDDGATMRLGVKAKAST 331
            MA H +A  LL+AS+FV Q VVTLGFIAPKA VAVG SAGEGFLGE LQ KGL RGQ CMVSSR D    DGATMRLG+  K +T
Sbjct:    1 MAPHSLAALLLVASVFVCQVVVTLGFIAPKASVAVGSSAGEGFLGETLQQKGLRRGQGCMVSSRPDSRGGDGATMRLGLSGKKTT 85
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13714.2923.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K928_9PHAE6.600e-3750.72PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G803_ECTSI3.000e-3546.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G824_ECTSI5.400e-3448.98PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JLH6_9PHAE6.850e-2771.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G820_ECTSI1.580e-2470.59UDP-sulfoquinovose: diacylglycerol alpha-sulfoquin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13714contigEcto-sp13_S_contig13714:1838..4028 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size924
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionUDP-sulfoquinovose: diacylglycerol alpha-sulfoquinovosyltransferase SQD2, N-terminal fragment, family GT4
Ec32 orthologEc-06_009850.1
Cds size393
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462732.1973648-UTR-Ecto-sp13_S_contig13714:1837..23131681462732.1973648-UTR-Ecto-sp13_S_contig13714:1837..2313Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13714 1838..2313 -
1681462732.2062273-UTR-Ecto-sp13_S_contig13714:2764..28121681462732.2062273-UTR-Ecto-sp13_S_contig13714:2764..2812Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13714 2765..2812 -
1681462732.23305-UTR-Ecto-sp13_S_contig13714:4021..40281681462732.23305-UTR-Ecto-sp13_S_contig13714:4021..4028Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13714 4022..4028 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462732.2142239-CDS-Ecto-sp13_S_contig13714:2812..29021681462732.2142239-CDS-Ecto-sp13_S_contig13714:2812..2902Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13714 2813..2902 -
1681462732.2221992-CDS-Ecto-sp13_S_contig13714:3718..40211681462732.2221992-CDS-Ecto-sp13_S_contig13714:3718..4021Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13714 3719..4021 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13714.2923.1prot_Ecto-sp13_S_contig13714.2923.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13714 2813..4021 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13714.2923.1

>prot_Ecto-sp13_S_contig13714.2923.1 ID=prot_Ecto-sp13_S_contig13714.2923.1|Name=mRNA_Ecto-sp13_S_contig13714.2923.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=131bp
MHAYVDTHGAHHRAVDSGVVRTPFMARHRIAGRLLIASIFVGQAVVTLGF
IAPKAFVAVGRSAGEGFLGEILQKGLGRGQSCMVSSRTDRGVDDGATMRL
GVKAKASTAGGKVGRRKRCSRCVQVYRGSA*
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mRNA from alignment at Ecto-sp13_S_contig13714:1838..4028-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13714.2923.1 ID=mRNA_Ecto-sp13_S_contig13714.2923.1|Name=mRNA_Ecto-sp13_S_contig13714.2923.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2191bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13714:1838..4028- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAATACATGCATGCTTACGTTGACACCCACGGGGCACATCATCGAGCAG
TAGATTCAGGCGTCGTGCGAACGCCGTTCATGGCTCGCCACAGGATTGCC
GGTCGACTACTGATCGCGTCCATTTTCGTGGGCCAGGCGGTTGTGACCCT
GGGGTTCATCGCGCCCAAGGCTTTTGTCGCCGTGGGAAGAAGCGCCGGCG
AGGGCTTCCTGGGTGAAATATTGCAGAAAGGGCTTGGGCGCGGGCAGAGC
TGTATGGTTTCTTCGAGGACGGACAGAGGAGTTGATGATGGGGCTACTAT
GCGCCTTGGGGTGAGTGTGGGCGCAGCCAGTCTCTTGTCATGTTGGTCAG
ACGCCCGTAGGAATCTACATACAGCAGTAACCTTCGAAGAGCTGTCTCAA
ATTTCCACTCCCTTTTTCACGCTCAGCAGCAGCCCTTTGTTGCAGCAGCT
CTCCTTGCCCAGAGATGTTCTACGGCGAATGTCTGAACAACAAGTAAAGC
GCAACAGCAGTCGTTCGAAACAAGTGGGACGTGATACTCCGTGATGCTGT
ACTCTACACAGCAACATTGTGAAACCAAAGGAGATGGAATGTAGTAAATA
CAACAGGGTCCATTTCAATTCGGCGGAGTACAACTCCACATGAGCACCCG
CGTATGGCCAAAAGGTGGCAATCATAGACTTTCCTTCTAGACGCCACCAT
GTAGGTGTTGCTGTAGTCTATCGGCAAACGCATGTATATTGCTTTGGAAG
CCGATGTACTCAACCATCGTTACCTCCCGTTTACAGGACGCACACGCCTA
GAGTCATCGGTTGATCCATGTCGCAAGAGTGAGGGTAAGAGTAGCATGTA
CTCAGCAGCGTGCGGCAGCTTCTCGTAGATACAGGCTTTTGCGGAATCGT
GAGCACCGAACCGGCGTGCGAGCTCAGCAGCGGTAGTGCATACATATGCA
TACGACAGCAGTTCCTTCTTCAGCAGTGCAGCCCCCGACCGAGCTGGGCT
CTGTCGGTACTGCGATAGGCAGGCTGTTGCGCGTCGTGTGAGCGAGCTAG
AGGGGACACACAGATCGCAGGCGATAAAGACGCACAAGCCCGATGACTAG
AAACTGTCCGCGTTTTTTAATCCCAGGTAAAAGCCAAGGCAAGCACCGCA
GGGGGAAAGGTGGGGCGCCGGAAGCGATGCAGCCGCTGCGTACAAGTCTA
TCGGGGGAGCGCCTAGGAAGCTGCTGCGGGACGAGCTACTTGCCATGTTT
GATGGCAAGACCGAGTGAGTGAGAGCGCTAGAGAGGAAAAGAACGACAAG
GAGGGACAGGGGGAGTGTGTGTGTGAGAGAGAGGGAGAAAGAAAGAGATA
CAGGCACAGGCATAGACAGACAGACACAAAGAGAGACAGACAGACAGACA
GACAGACAGAAGAGAGACAGAGAGGAACAGAGTGCGGAGACAAAAGTGCG
ATGAAAACTGGCAGCAGAATGGAGGAGGAAGATGTGCCATGTGAATGAGG
AGCAACCGGGTAGGAACAATGAGACGAGTGACGTGACGCTCAAGGTATGC
TCTCAAGCGACCGTTGAAAAAAAGCCTTTGAACTCACTCAATAACCACGA
GCAGCAACCGCGCGCTCCTCCCCCCGCCCCCATGGTGCGCATGTTGCTTC
AACGGGCTTTGATGATGCCCCCACCCCCCCCAATGCACCCTTCCCCTCGC
TTCCAACCTTTCCAGGCATGGGCCAACGCAGGAACAGCATCAATTATCAT
CCCCTCTCCAGCGCAACCCATTCCAGGAGTGCGCCAACCTGTTCTGGCTG
GGGCAGCCGAACCGAGCGCTACGGGTGCTGTGCTACGGCCTCGTCGCCTC
CGGCCACCATCACGACGCCTGCGCCGCCCCCGCGGCTCCGACTGTCGAGG
GGGGGGGGTTTCCTCAACAGTGGCAGCGGATAGCTTGTCGGGTCTCGGCC
TATGCAACCGCGCCATCGACGTCGCGATGACGCCCTTCCTCGTGTCCAAG
CTCCGGCAGATCGAGAGCAGAGGCATACCCGCTCGCGACGGGTCGGCGGT
AGCGGCGACGACCGGCGGCGGTGGCGACGGGTCGGCGGGAGACCTCCTGC
TGATCAACACGCGGCGGGCTGCGGCAGCACCTGGCTCGGAACGGGATGGA
AGTCTCGGCGCTGGAGGTGCTCGGGAGTGACGCCAGCGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13714:1838..4028-

>mRNA_Ecto-sp13_S_contig13714.2923.1 ID=mRNA_Ecto-sp13_S_contig13714.2923.1|Name=mRNA_Ecto-sp13_S_contig13714.2923.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13714:1838..4028- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCATGCTTACGTTGACACCCACGGGGCACATCATCGAGCAGTAGATTC
AGGCGTCGTGCGAACGCCGTTCATGGCTCGCCACAGGATTGCCGGTCGAC
TACTGATCGCGTCCATTTTCGTGGGCCAGGCGGTTGTGACCCTGGGGTTC
ATCGCGCCCAAGGCTTTTGTCGCCGTGGGAAGAAGCGCCGGCGAGGGCTT
CCTGGGTGAAATATTGCAGAAAGGGCTTGGGCGCGGGCAGAGCTGTATGG
TTTCTTCGAGGACGGACAGAGGAGTTGATGATGGGGCTACTATGCGCCTT
GGGGTAAAAGCCAAGGCAAGCACCGCAGGGGGAAAGGTGGGGCGCCGGAA
GCGATGCAGCCGCTGCGTACAAGTCTATCGGGGGAGCGCCTAG
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