mRNA_Ecto-sp13_S_contig13703.2919.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13703.2919.1
Unique NamemRNA_Ecto-sp13_S_contig13703.2919.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13703.2919.1 vs. uniprot
Match: D8LKU4_ECTSI (Formin-like 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKU4_ECTSI)

HSP 1 Score: 187 bits (474), Expect = 6.610e-53
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 2 
Query:   29 KEVYIPTEDLGVFMATLMDGMRSDGVQLAQSAKSVVANTYQVVVRPWEAVTRMAAPFLPTNPPHIQPSRENTRRGHELLDNALAFRMPGAF 301
            KEVYIPTEDLGVFMATLMDGMRSDGVQLAQSAKSVVANTYQVVVRPWEAVTRMAAPFLPTNPPHIQPSRENTRRGHELLDNALAFRMPGAF
Sbjct:  116 KEVYIPTEDLGVFMATLMDGMRSDGVQLAQSAKSVVANTYQVVVRPWEAVTRMAAPFLPTNPPHIQPSRENTRRGHELLDNALAFRMPGAF 206
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13703.2919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKU4_ECTSI6.610e-53100.00Formin-like 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13703contigEcto-sp13_S_contig13703:2846..3748 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size304
Hectar predicted targeting categoryother localisation
Exons2
Cds size303
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462731.9628935-CDS-Ecto-sp13_S_contig13703:2845..29961681462731.9628935-CDS-Ecto-sp13_S_contig13703:2845..2996Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13703 2846..2996 +
1681462731.9731572-CDS-Ecto-sp13_S_contig13703:3596..37481681462731.9731572-CDS-Ecto-sp13_S_contig13703:3596..3748Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13703 3597..3748 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13703.2919.1prot_Ecto-sp13_S_contig13703.2919.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13703 2846..3748 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13703.2919.1

>prot_Ecto-sp13_S_contig13703.2919.1 ID=prot_Ecto-sp13_S_contig13703.2919.1|Name=mRNA_Ecto-sp13_S_contig13703.2919.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=101bp
MGGRRRRRRQGGVHPHRGSWRVHGHLDGRDEVGRGAAGAVRQERRREYLS
GGRAPVGGRNAHGGTVPADQPPPHPALAGEHQARPRAPRQRPGLPHAGGF
R
back to top

mRNA from alignment at Ecto-sp13_S_contig13703:2846..3748+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13703.2919.1 ID=mRNA_Ecto-sp13_S_contig13703.2919.1|Name=mRNA_Ecto-sp13_S_contig13703.2919.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=903bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13703:2846..3748+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGAGGACGACGGCGACGACGACGACAAGGAGGTGTACATCCCCACAG
AGGATCTTGGCGTGTTCATGGCCACCTTGATGGACGGGATGAGGTCGGAC
GGGGTGCAGCTGGCGCAGTCCGCCAAGAGCGTCGTCGCGAATACTTATCA
GGTTCGTATTGGTGTGACCCACCCCGTTCATGAGCGAGACACAGGAAAAA
AGTTGGATATAGAGCCACACGCGGGAAGGCGCAGCGGTGCTACCTACTGC
TGCTGCTGTGCAACATGAGAGCGTGGATAGCAGCACGCGGCAGCAGCGTA
TTCAGCCGTGTTCCCTGTTGTTCATTGGACTTTTCTCCATCTTTTCATGG
GCGCACTCGCAGGTTTGGTCTCGGTGGCTCGTGGGTGGTGGCTGCTGTCG
ACTAATTCCTTCCCGTCATGAGTGTATTGAGTGCGCGAACATGTAGGCGG
GTATGTAGACGAGGGCGAAGGCGATAGCTGCAGTTTTATCCAACACCGAA
AGTACGGACCAACCGGCCGCAACGATTTCCACGCGTTTGCTCAGCTACTG
CATCTCGTTCTTGTCGCAAGGACCCTCGAAAGACTGAAATCAATCAAATT
CTTGGATGAACCCAAGGCACGCACTGGTTGAGGCTGTATACGTCTTGTGT
CTTGCAGAACCAAACACCGACAAACCGCCGTTCCGCCATTTTTACTGTGA
CACCTGCAATCCTTCGTATTTACGTACCCTTGCTACAACCCGACGCTGCA
GGTGGTCGTGCGCCCGTGGGAGGCCGTAACGCGCATGGCGGCACCGTTCC
TGCCGACCAACCCCCCCCACATCCAGCCCTCGCGGGAGAACACCAGGCGC
GGCCACGAGCTCCTCGACAACGCCCTGGCCTTCCGCATGCCGGGGGCTTT
CGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13703:2846..3748+

>mRNA_Ecto-sp13_S_contig13703.2919.1 ID=mRNA_Ecto-sp13_S_contig13703.2919.1|Name=mRNA_Ecto-sp13_S_contig13703.2919.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13703:2846..3748+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGAGGACGACGGCGACGACGACGACAAGGAGGTGTACATCCCCACAG
AGGATCTTGGCGTGTTCATGGCCACCTTGATGGACGGGATGAGGTCGGAC
GGGGTGCAGCTGGCGCAGTCCGCCAAGAGCGTCGTCGCGAATACTTATCA
GGTGGTCGTGCGCCCGTGGGAGGCCGTAACGCGCATGGCGGCACCGTTCC
TGCCGACCAACCCCCCCCACATCCAGCCCTCGCGGGAGAACACCAGGCGC
GGCCACGAGCTCCTCGACAACGCCCTGGCCTTCCGCATGCCGGGGGCTTT
CGG
back to top