prot_Ecto-sp13_S_contig13701.2917.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig13701.2917.1
Unique Nameprot_Ecto-sp13_S_contig13701.2917.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length101
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13701.2917.1 vs. uniprot
Match: A0A6H5JSB2_9PHAE (DUF4440 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JSB2_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 1.720e-48
Identity = 92/102 (90.20%), Postives = 94/102 (92.16%), Query Frame = 0 
Query:    1 MRRFSTTVLASTAVSMLTQDVNAFLAVPSTAPQAVWPVPSSLSVRRWNNRLRPRAWMSEGSRAPATSRRDMFQVAGAAIAATAVGLT-VPVTRSAGAAVTEG 101
            M RFSTTVLASTAVSMLTQDVNAFLAVPSTAPQAVWP PS  SVRRWNNR RPRAWMSEGS APAT+RRDMFQ AGAAIAATA+GLT VPVTRSAGAAVTEG
Sbjct:    1 MGRFSTTVLASTAVSMLTQDVNAFLAVPSTAPQAVWPAPSPSSVRRWNNRPRPRAWMSEGSGAPATTRRDMFQAAGAAIAATAMGLTAVPVTRSAGAAVTEG 102
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13701.2917.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JSB2_9PHAE1.720e-4890.20DUF4440 domain-containing protein n=2 Tax=Ectocarp... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..101
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..23
score: 0.453

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13701contigEcto-sp13_S_contig13701:1282..1891 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13701.2917.1mRNA_Ecto-sp13_S_contig13701.2917.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig13701 1282..2021 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig13701.2917.1 ID=prot_Ecto-sp13_S_contig13701.2917.1|Name=mRNA_Ecto-sp13_S_contig13701.2917.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=101bp
MRRFSTTVLASTAVSMLTQDVNAFLAVPSTAPQAVWPVPSSLSVRRWNNR
LRPRAWMSEGSRAPATSRRDMFQVAGAAIAATAVGLTVPVTRSAGAAVTE
G
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