mRNA_Ecto-sp13_S_contig137.2913.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig137.2913.1 vs. uniprot
Match: D7G0Y0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y0_ECTSI) HSP 1 Score: 244 bits (622), Expect = 1.240e-76 Identity = 129/200 (64.50%), Postives = 131/200 (65.50%), Query Frame = 3
Query: 255 AARTPRHAKGWRTAPEPQTYLRRRWLDR--------------------------------------------------RLADTNLDASLESFLEDFFAAYSGKRPEWVVTSPPYSRALNFVKAAMSLATKGAAFKMPISFLEPCAGRGGWLQTKPPSVCAFLRRAKYTRAKNAKMGEFWGVWYTQEMSCRKRTRLVLCPE 704
AARTPRHAKG RTAPEPQT+LRRRWLDR R ADTNLDASLESF EDF AAYSGKRPEWV TSPPYSRAL FVKAAMSLATKG FKM I FLEPCA GGWLQT PPS+C FLRRAKYTRA NAK EFWGVWYTQEMSCR RTRLV CPE
Sbjct: 2 AARTPRHAKGQRTAPEPQTHLRRRWLDRYCTSPEAMDASLGAVDITGCVLDMCGGPTDAVATRLRSTCEILTNDVSSGRPADTNLDASLESFPEDFLAAYSGKRPEWVATSPPYSRALTFVKAAMSLATKGVTFKMHIFFLEPCADWGGWLQTNPPSLCVFLRRAKYTRANNAKTSEFWGVWYTQEMSCRNRTRLVFCPE 201
BLAST of mRNA_Ecto-sp13_S_contig137.2913.1 vs. uniprot
Match: A0A6H5KU02_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU02_9PHAE) HSP 1 Score: 228 bits (582), Expect = 7.860e-70 Identity = 109/127 (85.83%), Postives = 112/127 (88.19%), Query Frame = 3
Query: 324 RWLDRRLADTNLDASLESFLEDFFAAYSGKRPEWVVTSPPYSRALNFVKAAMSLATKGAAFKMPISFLEPCAGRGGWLQTKPPSVCAFLRRAKYTRAKNAKMGEFWGVWYTQEMSCRKRTRLVLCPE 704
R + RR ADTNLDASLESF EDF AAYSGKRPEWVVTSPPYSRAL FVKAAMSLATKG FKMPIS LEPCA RGGWLQT PPSVC FLRRAKYTRA NAKMGEFWGVWYTQE+SCR +TRLV CPE
Sbjct: 130 RTMRRRPADTNLDASLESFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVEFKMPISCLEPCADRGGWLQTNPPSVCLFLRRAKYTRANNAKMGEFWGVWYTQEVSCRNKTRLVFCPE 256
BLAST of mRNA_Ecto-sp13_S_contig137.2913.1 vs. uniprot
Match: D8LSI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI1_ECTSI) HSP 1 Score: 223 bits (567), Expect = 4.320e-69 Identity = 106/122 (86.89%), Postives = 107/122 (87.70%), Query Frame = 3
Query: 339 RLADTNLDASLESFLEDFFAAYSGKRPEWVVTSPPYSRALNFVKAAMSLATKGAAFKMPISFLEPCAGRGGWLQTKPPSVCAFLRRAKYTRAKNAKMGEFWGVWYTQEMSCRKRTRLVLCPE 704
R ADTNL+ASLE F EDF AAYSGKRPEWVVTSPPYSRAL FVKAAMSLATKG AFKMPI FLEPCA RGGWLQT PPSVC FLRRAKYTRA NAK GEFWGVWY QEMSCR RTRLV CPE
Sbjct: 28 RPADTNLNASLELFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVAFKMPIFFLEPCADRGGWLQTNPPSVCVFLRRAKYTRANNAKTGEFWGVWYPQEMSCRNRTRLVFCPE 149
BLAST of mRNA_Ecto-sp13_S_contig137.2913.1 vs. uniprot
Match: A0A6H5JUK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK3_9PHAE) HSP 1 Score: 208 bits (530), Expect = 2.000e-61 Identity = 121/260 (46.54%), Postives = 150/260 (57.69%), Query Frame = 3
Query: 81 RAFVEEVGIVNQFPALDQWNSGVSALVLWKRPACLLQMYKRHKQKASKDRSKDRRARKAARTPRHAKGWRTAPEPQTYLRRRWLDR-------------------------------------------------RL-ADTNLDASLESFLEDFFAAYSGKRPEWVVTSPPYSRALNFVKAAMSLATKGAAFKMPISFLEPCAGRGGWLQTKPPSVCAFLRRAKYTRAKNAKMGEFWGVWYTQEMSCRKR--TRLVLCPE 704
R+FV+E GI ++FP +G + L L KR CLL++Y QK RS++R ARKA + PRH++ W APEP T+ +RR LDR RL A TNLDASL SF ++F A GK+P+WVVTSPPY A+ FVKAA+++ATKG A K+P+SFLEPCA RGGWL PP+VC FLRRAKYT A + K+GEFWGVWYT C K +RLV CPE
Sbjct: 47 RSFVDEAGIADKFPGFQSIAAGTNLLALCKRAGCLLELY----QKQEWARSRERVARKAKQMPRHSRMWSAAPEPVTHDKRRRLDRYCTLPEAVEVLQNAVAIAGCVLDMCGGPEDAVAQGFRSTCEVLTNDVSSRLSAGTNLDASLLSFRDNFRKANPGKQPDWVVTSPPYKGAVGFVKAALAVATKGVALKLPLSFLEPCADRGGWLVDNPPAVCIFLRRAKYTHAHHVKVGEFWGVWYTDGGCCGKSGGSRLVFCPE 302
BLAST of mRNA_Ecto-sp13_S_contig137.2913.1 vs. uniprot
Match: A0A6H5KD58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD58_9PHAE) HSP 1 Score: 179 bits (454), Expect = 4.830e-51 Identity = 104/195 (53.33%), Postives = 118/195 (60.51%), Query Frame = 3
Query: 81 RAFVEEVGIVNQFPALDQWNSGVSALVLWKRPACLLQMYKRHKQKASKDRSKDRRARKAARTPRHAKGWRTAPEPQTYLRRRWLDR--------------------------------------------------RLADTNLDASLESFLEDFFAAYSGKRPEWVVTSPPYSRALNFVKAAMSLATKGAAFKMP 515
RAFV+E+GI NQFPALD+ G S L L KR CLLQ+YK+H+Q+ SK+RSKDRRARKAA+TPRHA G T PEPQT+L+RRWLDR R ADTNLDASLESF +DFFAA SGKRP+WVVTSP Y AL FVKAAMSLAT+G P
Sbjct: 10 RAFVDEIGIANQFPALDEGGLGASTLTLCKRSGCLLQLYKKHEQRMSKERSKDRRARKAAQTPRHATGMWTVPEPQTHLKRRWLDRYCTSPEAVEALLGAVSITGCILDVCGGPTDAVATRLGPTCEVLTNDVSSGRPADTNLDASLESFPDDFFAASSGKRPDWVVTSPSYKSALTFVKAAMSLATRGVTVPAP 204
BLAST of mRNA_Ecto-sp13_S_contig137.2913.1 vs. uniprot
Match: A0A6H5K049_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K049_9PHAE) HSP 1 Score: 153 bits (386), Expect = 5.930e-41 Identity = 92/231 (39.83%), Postives = 126/231 (54.55%), Query Frame = 3
Query: 111 NQFPALDQWNSGVSALVLWKRPACLLQMYKRHKQKASKDRSKDRRARKAARTPRHAKGWRTAPEPQTYLRRRWLDR----------------------------------RLADT----------------NLDASLESFLEDFFAAYSGKRPEWVVTSPPYSRALNFVKAAMSLATKGAAFKMPISFLEPCAGRGGWLQTKPPSVCAFLRRAKYTRAKNAKMGEFWGVWY 653
++FP L + + LVL KR CLL+++ ++Q+ S+ +K R+A R P+ W APEP L+RR +DR RL DT NLDAS SF +DF AA+ G++P+W+VTSPPY AL FVKAA+++A KG A K+P+SFLEPCA R GWLQ PP++C + RA+Y A + ++GEFWGVWY
Sbjct: 3 DKFPGLKCGDPSIDKLVLCKRAGCLLELFVLNQQRDSRAPTK----RRAKRGPK----WTCAPEPVKQLKRRCVDRYCTSPATLEALLGVVSISGCVLDMCGGTDDAVAIRLRDTCQVLTNDVGPRLSPATNLDASSASFTDDFLAAHHGQQPDWIVTSPPYKGALAFVKAALTVAKKGVALKLPLSFLEPCADRAGWLQANPPALCMMMSRARYQPA-HVRVGEFWGVWY 224
BLAST of mRNA_Ecto-sp13_S_contig137.2913.1 vs. uniprot
Match: A0A6H5KAM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM1_9PHAE) HSP 1 Score: 139 bits (349), Expect = 1.000e-36 Identity = 60/102 (58.82%), Postives = 81/102 (79.41%), Query Frame = 3
Query: 348 DTNLDASLESFLEDFFAAYSGKRPEWVVTSPPYSRALNFVKAAMSLATKGAAFKMPISFLEPCAGRGGWLQTKPPSVCAFLRRAKYTRAKNAKMGEFWGVWY 653
DTNLDAS S+ +D+ AA++G++P+WVV SPPY AL+FVKAA+++A +G A K+P+SFLEPCA R GWLQ PPS+C + RA+Y A + ++GEFWGVWY
Sbjct: 13 DTNLDASSTSYADDYLAAHNGQQPDWVVASPPYKGALSFVKAALTVAKEGVALKLPLSFLEPCADRAGWLQENPPSLCMMMSRARYQPA-HVRVGEFWGVWY 113
BLAST of mRNA_Ecto-sp13_S_contig137.2913.1 vs. uniprot
Match: D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI) HSP 1 Score: 141 bits (356), Expect = 1.270e-36 Identity = 87/214 (40.65%), Postives = 112/214 (52.34%), Query Frame = 3
Query: 114 QFPALDQWNSGVSALVLWKRPACLLQMYKRHKQKASKDRSKDRRARKAARTPRHAKGWRTAPEPQTYLRRRWLDR-------------------------------------------------RLA------DTNLDASLESFLEDFFAAYSGKRPEWVVTSPPYSRALNFVKAAMSLATKGAAFKMPISFLEPCAGRGGWLQTKPPSVCAFL 590
+FP+L+ SG+ LVL RP CLLQ+Y + ++ +K R+K R A + RH W PEP+ +++RR LDR RL+ DTNLDASL SF DF A G+RP+WV+TSPPY AL +VK+A+SLA KG A K+P+SFLEPCA RGGWLQ PP+VC F
Sbjct: 12 KFPSLNAEGSGMYRLVLCNRPDCLLQLYIKQLREKNKPRTKLR----AQQLARHGAKWTGIPEPRKHIKRRCLDRYCTSPEAVEALLGAVELEGCVLDMCGGPGDAIATRLGATCKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCVFF 221
BLAST of mRNA_Ecto-sp13_S_contig137.2913.1 vs. uniprot
Match: A0A6H5JSV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSV3_9PHAE) HSP 1 Score: 137 bits (346), Expect = 9.520e-36 Identity = 65/120 (54.17%), Postives = 84/120 (70.00%), Query Frame = 3
Query: 348 DTNLDASLESFLEDFFAAYSGKRPEWVVTSPPYSRALNFVKAAMSLATKGAAFKMPISFLEPCAGRGGWLQTKPPSVCAFLRRAKYTRAKNAKMGEFWGVWYT--QEMSCRKRTRLVLCP 701
DTNLDAS SF +DF AA+ ++P+WVVT PPY+ AL FVKAA+ +A KG A K+P+SFLEPCA R GWLQ PP++C + RA+Y A + ++GEFWGVWY S T+L+ P
Sbjct: 54 DTNLDASSASFTDDFLAAHHEQQPDWVVTRPPYNGALAFVKAALPVAKKGVALKLPLSFLEPCADRAGWLQANPPALCMMMSRARYQPA-HVRVGEFWGVWYPPGSGYSSSDSTKLLFVP 172
BLAST of mRNA_Ecto-sp13_S_contig137.2913.1 vs. uniprot
Match: A0A6H5K929_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K929_9PHAE) HSP 1 Score: 135 bits (341), Expect = 1.570e-35 Identity = 61/104 (58.65%), Postives = 77/104 (74.04%), Query Frame = 3
Query: 399 AYSGKRPEWVVTSPPYSRALNFVKAAMSLATKGAAFKMPISFLEPCAGRGGWLQTKPPSVCAFLRRAKYTRAKNAKMGEFWGVWYTQEMSCRKR--TRLVLCPE 704
A+ GK+P+WVVTSPPY A+ FVKA +++A KG A ++P+SF +PCA RG WL PP +C FLRRAKYT A + K+GEFWGVWYT + C K +RLV CPE
Sbjct: 31 AHPGKQPDWVVTSPPYKGAVGFVKAVLAVAAKGVALRLPLSFRKPCADRGSWLVDNPPVMCGFLRRAKYTHAHHVKVGEFWGVWYT-DGGCGKSGGSRLVFCPE 133 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig137.2913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig137.2913.1 >prot_Ecto-sp13_S_contig137.2913.1 ID=prot_Ecto-sp13_S_contig137.2913.1|Name=mRNA_Ecto-sp13_S_contig137.2913.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=172bp MYKRHKQKASKDRSKDRRARKAARTPRHAKGWRTAPEPQTYLRRRWLDRRback to top mRNA from alignment at Ecto-sp13_S_contig137:19251..21172- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig137.2913.1 ID=mRNA_Ecto-sp13_S_contig137.2913.1|Name=mRNA_Ecto-sp13_S_contig137.2913.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1922bp|location=Sequence derived from alignment at Ecto-sp13_S_contig137:19251..21172- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig137:19251..21172- >mRNA_Ecto-sp13_S_contig137.2913.1 ID=mRNA_Ecto-sp13_S_contig137.2913.1|Name=mRNA_Ecto-sp13_S_contig137.2913.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=516bp|location=Sequence derived from alignment at Ecto-sp13_S_contig137:19251..21172- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |