mRNA_Ecto-sp13_S_contig137.2912.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig137.2912.1
Unique NamemRNA_Ecto-sp13_S_contig137.2912.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig137.2912.1 vs. uniprot
Match: A0A6H5JS69_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS69_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.330e-16
Identity = 44/56 (78.57%), Postives = 47/56 (83.93%), Query Frame = 2 
Query:  503 SEMIEHDRRFKHVLGSEYTDVTLPGYESLLRRPICVDATAQVLLNGADSADGGGRG 670
            SEMIE+ R FKHVLGS+ TDV LPGYE LLRRP+ VDATAQ LLN ADSADGG RG
Sbjct:   45 SEMIEYARSFKHVLGSQDTDVILPGYEGLLRRPMLVDATAQALLNEADSADGGTRG 100
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BLAST of mRNA_Ecto-sp13_S_contig137.2912.1 vs. uniprot
Match: A0A6H5KB14_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB14_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.190e-15
Identity = 39/57 (68.42%), Postives = 45/57 (78.95%), Query Frame = 2 
Query:  503 SEMIEHDRRFKHVLGSEYTDVTLPGYESLLRRPICVDATAQVLLNGADSADGGGRGL 673
            S+++EH   FK  LGS  T V LPGYE LLRRP+CVD TAQ LLNGADSADGGG+G+
Sbjct:   61 SDVVEHALSFKLDLGSGDTVVILPGYEGLLRRPMCVDVTAQALLNGADSADGGGKGI 117
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BLAST of mRNA_Ecto-sp13_S_contig137.2912.1 vs. uniprot
Match: A0A6H5JIG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIG7_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.470e-11
Identity = 36/55 (65.45%), Postives = 43/55 (78.18%), Query Frame = 2 
Query:  509 MIEHDRRFKHVLGSEYTDVTLPGYESLLRRPICVDATAQVLLNGADSADGGGRGL 673
            +I+H + FK VL SE TDV LPGYE LLRRP+ VD TA+ LLNG + ADGGGRG+
Sbjct:   41 IIQHAKSFKDVLCSEDTDVILPGYEGLLRRPMRVDRTAEDLLNGGEGADGGGRGV 95
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig137.2912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JS69_9PHAE1.330e-1678.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB14_9PHAE1.190e-1568.42Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIG7_9PHAE1.470e-1165.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig137contigEcto-sp13_S_contig137:15828..17809 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size679
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-09_001720.1
Cds size171
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462731.5024576-UTR-Ecto-sp13_S_contig137:15827..161501681462731.5024576-UTR-Ecto-sp13_S_contig137:15827..16150Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig137 15828..16150 +
1681462731.5109363-UTR-Ecto-sp13_S_contig137:16739..169241681462731.5109363-UTR-Ecto-sp13_S_contig137:16739..16924Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig137 16740..16924 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462731.5182285-CDS-Ecto-sp13_S_contig137:16924..169901681462731.5182285-CDS-Ecto-sp13_S_contig137:16924..16990Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig137 16925..16990 +
1681462731.5267045-CDS-Ecto-sp13_S_contig137:17704..178091681462731.5267045-CDS-Ecto-sp13_S_contig137:17704..17809Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig137 17705..17809 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig137.2912.1prot_Ecto-sp13_S_contig137.2912.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig137 16925..17809 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig137.2912.1

>prot_Ecto-sp13_S_contig137.2912.1 ID=prot_Ecto-sp13_S_contig137.2912.1|Name=mRNA_Ecto-sp13_S_contig137.2912.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=57bp
MIEHDRRFKHVLGSEYTDVTLPGYESLLRRPICVDATAQVLLNGADSADG
GGRGLR*
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mRNA from alignment at Ecto-sp13_S_contig137:15828..17809+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig137.2912.1 ID=mRNA_Ecto-sp13_S_contig137.2912.1|Name=mRNA_Ecto-sp13_S_contig137.2912.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1982bp|location=Sequence derived from alignment at Ecto-sp13_S_contig137:15828..17809+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCCCTTTTTCCTATGGGATGCAGCGAAACTTTGCAACAGCTCCCGCTGT
AGTGCTGATCCAAAATTCTAGTATTGACATTCAGTGAGTTTGCCTACTAA
GCCGTACACCCACCACGTTCTGAGGGATTCGGCCATTTCTACGGGTGGTC
AACTTGTGGTTGAAGTTGAGGTTGGGGGGTGGTATATTCCGACATATGTT
TGGCGGGCTGCTCCATCAACACGAGGTATCGACATCCACGTGTCCATCCA
CTGCGCATGCTGCAGCCTGGCACCTAGATCTTCAGCACTGCGGGCGAGGG
AAGTGCTGCGTCAGGCTTTGAACGTGAGTGGTTTCCAAACCATGGCTGTC
AACACCCACGAGGATCTGTTTTACTCGATCAAGTGAGGAGCGCACCAATG
ATACATAGCCTACCTGGATACGCGGGCTGTACAGCGGTACGCTGCTGCGT
TGCCGCTCTTACGGAGGAGGGCGGCCGTCTAGTAGAGGATACGCTTGAGT
CTATGGGTGACGATCGCCGAGATATAGGAATGGCTGCTAACGACGCAAAT
TGCATAGCACATACGACCGATTCGGTGTATAACACAGATAGATATGTTCG
GATTTTTGTTTGAAAATGTCCGTTCATGTGCATACGTGTACAGCAGTAGT
CTACAGCAGTAGTCTTTACACGGCCTGTGAGACCAGGTCTTGCTTACTGC
CTGCTGTGGCCGATTCTCGCATTGGTGGCTCAAAGAATGTGCAGCAGTTG
TAACTTTGCATTGCACATGTTCAAGTACCGTGTGTGATGCATACACCGCA
ATGTTTCGTGTGCGCACCGCCGTTTTTGGCATGCCGCACCCCTTTCTGGA
CCCGCACGCAATGCCAACACTGTACGAAATTGGCATGCTGCTATCGGTGT
ACGATGTAGCAGGATGGGTCTCAGCCGGAAAAACGCGTGGGGGTCAATGT
GGAATCGGGAATGTCATGGAAGAATGACAACGCACTCGCGGACCACCAAG
GGAACTTCCGTTTCTTGGAGCGCGTGAGGGAAAGCATCCATGTTTTGCTC
TCTAGAGAAAGCATGGAAGACGTTGTGGCACTCGTGCACGCTCGGAGATG
ATCGAGCACGATAGGAGATTCAAGCACGTGTTGGGCAGCGAATATACGGA
CGTCACCCTACCGGTAAGAGCACTAGACGTACGCACGGAATTCGGCATAT
AACCGTAGTCGTCGGTGCCGCCCCCCCCCCCCCTCCTTGATGCCGTAGCA
CCTCCCCCGAAAAAATACAGCAGGGTGAATTTTGCGACTCGTTTTTATGT
CACTACCCGTCAAAGTTGACGTGCCCATATTATATCCGTATCTTGCCGTA
TTTGGGACTGGACCCGCGGTCGACGTTTGGCAAGACGAGTGCATCACGGT
GTCATCTAGAGGGCTCTCCAAGTGCTATCATTGTTTATTTTCCTCCTCAA
GCTTCTCTCTTTTTTTTCCTTGCTGGAACGGTTGGAATGATCCTCTTGTC
TGTGCACCCCCCGGGCCGCTGGGTGTATATGGAAAACTCCCACCCCATTT
TTCCTATTTACCCCCGAGATGGCATAATTGCAATTCCAGAGGCAAAGTCC
ATTCCCTTCAAGAGGGCGAACGGCCCCAGTGACCGCGGCACTTCATGTCT
TGGTATAAGCGCGCAATGTTTCGAGCATGACTAGCCAAAGTAGTCTCTGC
GAAGCACAAGGTGGGTGCACTTGCGCGAAAAAACTGGTCGCGTTGAATGC
CTTTCCAACACCCTGTGTATTGAGTGAGCAATATGTGTGCAACCATGAAT
CGTCCACGTCTCATAGGCACACCATGGGAACATACGATGCAAACAGAAAC
CCAACCGCCCCCGGTCGTTTTGTTCAGGGATACGAAAGCTTGTTGAGGCG
GCCCATATGCGTGGATGCAACAGCTCAAGTCCTGCTCAACGGGGCGGACA
GCGCGGATGGTGGGGGCAGAGGGTTACGATAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig137:15828..17809+

>mRNA_Ecto-sp13_S_contig137.2912.1 ID=mRNA_Ecto-sp13_S_contig137.2912.1|Name=mRNA_Ecto-sp13_S_contig137.2912.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig137:15828..17809+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCGAGCACGATAGGAGATTCAAGCACGTGTTGGGCAGCGAATATAC
GGACGTCACCCTACCGGGATACGAAAGCTTGTTGAGGCGGCCCATATGCG
TGGATGCAACAGCTCAAGTCCTGCTCAACGGGGCGGACAGCGCGGATGGT
GGGGGCAGAGGGTTACGATAA
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