mRNA_Ecto-sp13_S_contig137.2911.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig137.2911.1
Unique NamemRNA_Ecto-sp13_S_contig137.2911.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig137.2911.1 vs. uniprot
Match: D8LFN0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFN0_ECTSI)

HSP 1 Score: 432 bits (1112), Expect = 1.840e-145
Identity = 240/389 (61.70%), Postives = 242/389 (62.21%), Query Frame = 1 
Query:   40 DETRGPELRQGLDLFRVINRTGLQIRRGVGLNSEPCGRLFAGDVFCVNRCSAVPHRQENKRGKMRQLRLTRLHMVQPYTGWVTWSSKWVEKFQGGDTRPGPIPLKSTLRDNCPVSMVKPSDACSVRGGASSRCDPSKRCGPRHEAQGTHTEWDVLTHQESRTCTPRTTWLHARDGVWPVDVKSIPGPKYFPSVSGANRDHCSAEYGVLFPKERRFLSNATRYLSKGHERQARGVFSPGPAMYVGHDEILPLAPRPPPPASAPGSSRCRQHPPSSRTAGTGEGKVNVVNKRFLRRPRAVTAGSRVEIGARRRRQPVSGTTGAGAGSPYIGLKEQGAADKIVGKANAGTTGCPVIRTLVSSRGEREGPDGCFVTRMGAESPGPASHYPNVS 1206
            D   GPELRQGLDLFRVINRTGLQIRRGVGLNSEPCGRLFAGDVFCVNRCSAVPH QENKRGKMRQLRLTRLHMVQPYTGWVTWSSKWVEKFQGGDTRPGPIPLKSTLRDNCPVSMVKPSDAC VR GASSR                                         DGVWPVDVKSIPGPKY PSVSGANRDH SAEYGV+FPKERRFLSN+TR                                                                                          RQPVS TT AGAGSPYIGLKEQ AADKIVGKANAGTTGCPVIRTLVSSRGEREGPDGCFVTRMGAESPGP S   N S
Sbjct:   18 DRNSGPELRQGLDLFRVINRTGLQIRRGVGLNSEPCGRLFAGDVFCVNRCSAVPHHQENKRGKMRQLRLTRLHMVQPYTGWVTWSSKWVEKFQGGDTRPGPIPLKSTLRDNCPVSMVKPSDACPVRRGASSR-----------------------------------------DGVWPVDVKSIPGPKYLPSVSGANRDHSSAEYGVVFPKERRFLSNSTR------------------------------------------------------------------------------------------RQPVSSTTAAGAGSPYIGLKEQEAADKIVGKANAGTTGCPVIRTLVSSRGEREGPDGCFVTRMGAESPGPTSGERNGS 275
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig137.2911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFN0_ECTSI1.840e-14561.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig137contigEcto-sp13_S_contig137:8687..12508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1580
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_001510.1
Cds size1560
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig137.2911.1prot_Ecto-sp13_S_contig137.2911.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig137 8687..12488 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462731.421439-CDS-Ecto-sp13_S_contig137:8686..87381681462731.421439-CDS-Ecto-sp13_S_contig137:8686..8738Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig137 8687..8738 +
1681462731.4329228-CDS-Ecto-sp13_S_contig137:9946..104511681462731.4329228-CDS-Ecto-sp13_S_contig137:9946..10451Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig137 9947..10451 +
1681462731.4423773-CDS-Ecto-sp13_S_contig137:10761..109051681462731.4423773-CDS-Ecto-sp13_S_contig137:10761..10905Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig137 10762..10905 +
1681462731.453109-CDS-Ecto-sp13_S_contig137:11366..116361681462731.453109-CDS-Ecto-sp13_S_contig137:11366..11636Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig137 11367..11636 +
1681462731.4608192-CDS-Ecto-sp13_S_contig137:11899..124881681462731.4608192-CDS-Ecto-sp13_S_contig137:11899..12488Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig137 11900..12488 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462731.4693074-UTR-Ecto-sp13_S_contig137:12488..125081681462731.4693074-UTR-Ecto-sp13_S_contig137:12488..12508Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig137 12489..12508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig137.2911.1

>prot_Ecto-sp13_S_contig137.2911.1 ID=prot_Ecto-sp13_S_contig137.2911.1|Name=mRNA_Ecto-sp13_S_contig137.2911.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=520bp
MFLCRTPGDRFPHDETRGPELRQGLDLFRVINRTGLQIRRGVGLNSEPCG
RLFAGDVFCVNRCSAVPHRQENKRGKMRQLRLTRLHMVQPYTGWVTWSSK
WVEKFQGGDTRPGPIPLKSTLRDNCPVSMVKPSDACSVRGGASSRCDPSK
RCGPRHEAQGTHTEWDVLTHQESRTCTPRTTWLHARDGVWPVDVKSIPGP
KYFPSVSGANRDHCSAEYGVLFPKERRFLSNATRYLSKGHERQARGVFSP
GPAMYVGHDEILPLAPRPPPPASAPGSSRCRQHPPSSRTAGTGEGKVNVV
NKRFLRRPRAVTAGSRVEIGARRRRQPVSGTTGAGAGSPYIGLKEQGAAD
KIVGKANAGTTGCPVIRTLVSSRGEREGPDGCFVTRMGAESPGPASHYPN
VSSISSRGCPVFATPTALDAEEWERRNKSSNSKALHHQPAKMSAIPKTSQ
VHRRWPAYTHLRDEGRISGNLGQDSPGPGAVNIADHDPFRASSFLKMDVC
HPPPASNAASFPCRVPFGQ*
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mRNA from alignment at Ecto-sp13_S_contig137:8687..12508+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig137.2911.1 ID=mRNA_Ecto-sp13_S_contig137.2911.1|Name=mRNA_Ecto-sp13_S_contig137.2911.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3822bp|location=Sequence derived from alignment at Ecto-sp13_S_contig137:8687..12508+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCCTGTGTCGAACACCGGGAGACAGATTTCCTCACGACGAGACTCG
TGGTAGGTGGTAAGTGTGTGCGCGGTTGTGTTTACCACAGACATTCTTTG
CTCAGTCTGTCCGTTGTACTTCTTACTCTTGTAGATTACGCAACGATCCT
ATCGTGGACCATCAGGAGACGAGTCAAGTCTGGAGGCATCATTGTTTGGT
CGCCTACGTTCATTGTCAGTTGGCTCACAGTACAGTAGTACATGTGAAGT
ACGCTCAGATTCGTCGTGCCATTGCGGCGTCAGAGAAGGCTCTGTTGCAA
TGGTTTGCTACCGGAATAGATCGACGCGTTCCCCTGCGTCGTAGGCAGCG
CCCTACATACATACAAGCGAGTGCAGCACATACAGACACACAGGTGGAGA
AGAAAACCGCAATTTGATGTATTCGTGTTTCGGACCCATCTCCGGCGATC
CGCTTTGTCGCACAACCAAAACGCCGAGACTACAGTACCTACATAATACC
TCGGAACTTGCTCGAAACACATCTACAAACATGAAGATGGCAAACCAATC
TGTAGGTATGTGCGGGGAAACGACATGACCGATGCGGACCCGCGTCGGCG
AGTATACATTCCAGCTTTATGGAAGGGATAGACTACATGTCTTGCTTTGT
GATCTTTGATTTTCTTTGTGAAATCTACTTTGGTATAGATCTACTTACGT
AACCCTAGACGCATTTGCTGGGGCCTCGCGTGGCGAGTGGGAGCCCGCCC
TGTGCATCGATCTCCTTTTGGACATCATTTGTCCGACATGTCGCACTGAA
GACTGAGTGTTTGGTAGTGTCATGGATTCTCGCGGTAGTTGTACGGATTC
GCCCTTGGGTCCTACATCTATCGCAAATTATTTAGATCGTTATGCTGTCT
ACAGACTAAAATGTGCATCGGGTACCCGTTTTGGGGTAGTTAGCCTGCGA
CCGATGAACGCGCCCGTGTCAGTTGGACCAGTGTGGGTGTTGGCAAGTAC
TCCACAGAGACAGAAAGGATTTGATGTAAAGACAACAACATCAACCTCTG
ATGTACTACTTACCCCGACGGCACAGGCCCTCTCACGAGCGGGTACGTGT
GCAATACTGTCTATTACACCCAGTGGTTGCAACTATTCTGTTGCAGTCCC
ACTCCAAGAGACTGGCTACCCCGGCAGCGTATCAGGATACTGAGGTAGAG
TAATACAAGAAGTGCAGCATTTTTTTACATTTTGCCCCCCAACGGTTCTC
TCGAAAACAGGTCCCGAGCTACGGCAAGGCTTGGACCTGTTCCGGGTTAT
CAACCGTACCGGCCTGCAAATCCGCAGGGGCGTAGGCCTCAACTCAGAGC
CCTGCGGTCGCCTGTTCGCCGGAGACGTGTTCTGCGTCAATCGTTGTTCA
GCAGTACCCCACCGCCAGGAAAATAAGAGAGGGAAAATGCGCCAGCTGCG
CTTGACTCGATTACATATGGTCCAGCCGTACACGGGCTGGGTCACTTGGT
CTTCCAAGTGGGTGGAAAAGTTTCAGGGAGGCGACACAAGGCCTGGACCG
ATCCCTCTGAAATCGACGCTGAGGGACAACTGCCCGGTGTCGATGGTGAA
ACCGTCGGACGCATGCTCCGTGCGGGGGGGGGCGTCATCGCGGTGCGACC
CTTCAAAGCGTTGTGGGCCCCGGCATGAGGCACAGGGCACGCATACAGAA
TGGGATGTCCTTACACATCAGGAGTCACGAACGTGTACCCCAAGAACGAC
ATGGCTGCACGCAAGGTGACCGCACGTTTTTCGTGTACTCGAAGCTTCGT
CTGGACCTTTTGTGATTGCTTCGCTGGCCACCATCATTGTCGCTAAGCGT
GCTAACCACGTTCATGCAGAAGAGCGGGGTGACACGTCACAGCCAACCGT
GTGAGTGGCACACATTAACAGCCCCGACGTTGCACTCAACCGACCTCGTG
CCGGATTCGCGTGCGCACTGGTGTACCCGGGTAGTAGCATGCTCTTACCG
ATGTTTTTGTCTTGACTTGAAACTTCCTCTTCCGTCATTGCTACACCCGT
TGCATCGATTTCATCAAACTGACAGGGATGGGGTGTGGCCGGTGGACGTC
AAAAGCATCCCAGGGCCCAAGTACTTTCCCAGCGTTTCCGGGGCTAATAG
AGACCATTGCAGTGCGGAATACGGGGTTTTATTCCCCAAGGAACGAAGGT
TTCTGAGCAATGCCACCAGGTGAGAGGCTCCAAGAAACCCTGGGACCACC
CGCTCTCCTCGCCGTTGGGGCATTTTACACTGAGGAGCAATCAAAGACGT
GGACGATCTCGATAATGTCTTTACGGTACAAACCTCGACTGGCCATGAAC
ACCTCTTTTTTCGGAGTAACGATGCCGGCAGTTAATGTTTTCCAAACGTG
TGCCCACCGAGTCTGCTTCACATTGCTAAAACATAAACGCCTGCACCGAA
ACACTTCTCAAGAGGACATATTTTATCGCCAAATACCTGGGGCAAGGTTT
GAAAATTTTGTGAAACAGTCGTTGTTTTTGTTTACGGGGGGTGAAACAAG
AGAAGCTCGTTACAGCCTACATAGCGCTCGCTTTTATCTCCTTGGATCGG
GAATACCTGACACACAATCTGACATCCGTTTTGGTTGGTGACCTCCTCAT
CGCCTCCCGCTCCGTGGCGCGCTCCTCCAGATACCTCAGCAAGGGTCACG
AGAGGCAGGCGCGGGGAGTATTTTCGCCTGGGCCGGCCATGTATGTTGGA
CACGATGAGATTTTGCCGCTGGCGCCACGACCCCCGCCTCCTGCCTCGGC
TCCCGGGTCGTCCCGTTGCCGACAACACCCCCCGTCGTCTAGAACAGCAG
GGACTGGAGAAGGAAAGGTCAACGTTGTTAACAAGCGTTTCCTTCGCAGG
CCACGGGCGGTAACAGCGGGTTCTCGTGTGGAGATTGGTGCAAGAAGAAG
GTGACCTGATTGTGTCATAGTTTGGTGGAGAACGGCAGCGCCAATAGTGT
TGACTGGAAAAGATTGTACACGCCGAGCTACGCCGACAGAGGGGTGCTCA
AGACCAAGCCGAGTCGCGGCGACTCGTATGACTTGCCTGCCTATGTCATG
CCTACCCACATGTTTTTTATCGGATTGTCTCGAGTGTGTCCCATACTCCA
AGTACTCTAAACAATTTAAGCCCCCCTTCCAAACGCCATGCATCGTCACT
ATCGTTCGCGCAGACGCCAGCCAGTCTCCGGTACCACCGGAGCGGGCGCG
GGTAGCCCATACATCGGGCTCAAGGAGCAAGGGGCAGCCGACAAAATCGT
CGGGAAGGCCAACGCGGGGACCACGGGCTGCCCCGTGATACGTACACTTG
TGTCCAGCAGAGGAGAACGAGAAGGCCCAGACGGATGTTTCGTGACGAGA
ATGGGTGCAGAGTCTCCCGGGCCGGCCAGCCACTACCCAAACGTTTCTTC
CATCTCTTCTCGAGGCTGTCCGGTATTTGCCACACCAACGGCGTTGGATG
CAGAGGAATGGGAACGACGTAACAAGAGTTCCAACTCTAAAGCTCTGCAT
CATCAGCCTGCGAAGATGTCGGCGATACCCAAGACTTCCCAAGTTCATCG
AAGATGGCCCGCGTATACCCACCTCAGGGACGAAGGTCGGATTTCGGGCA
ACTTGGGGCAAGACAGCCCTGGACCAGGCGCCGTCAATATTGCTGACCAT
GACCCTTTCCGAGCGAGTTCGTTCCTGAAAATGGATGTATGCCACCCGCC
ACCAGCGTCAAATGCCGCCTCGTTTCCGTGTCGCGTCCCTTTCGGACAAT
AACGTGTTTCAACCAGTGTCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig137:8687..12508+

>mRNA_Ecto-sp13_S_contig137.2911.1 ID=mRNA_Ecto-sp13_S_contig137.2911.1|Name=mRNA_Ecto-sp13_S_contig137.2911.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1560bp|location=Sequence derived from alignment at Ecto-sp13_S_contig137:8687..12508+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCCTGTGTCGAACACCGGGAGACAGATTTCCTCACGACGAGACTCG
TGGTCCCGAGCTACGGCAAGGCTTGGACCTGTTCCGGGTTATCAACCGTA
CCGGCCTGCAAATCCGCAGGGGCGTAGGCCTCAACTCAGAGCCCTGCGGT
CGCCTGTTCGCCGGAGACGTGTTCTGCGTCAATCGTTGTTCAGCAGTACC
CCACCGCCAGGAAAATAAGAGAGGGAAAATGCGCCAGCTGCGCTTGACTC
GATTACATATGGTCCAGCCGTACACGGGCTGGGTCACTTGGTCTTCCAAG
TGGGTGGAAAAGTTTCAGGGAGGCGACACAAGGCCTGGACCGATCCCTCT
GAAATCGACGCTGAGGGACAACTGCCCGGTGTCGATGGTGAAACCGTCGG
ACGCATGCTCCGTGCGGGGGGGGGCGTCATCGCGGTGCGACCCTTCAAAG
CGTTGTGGGCCCCGGCATGAGGCACAGGGCACGCATACAGAATGGGATGT
CCTTACACATCAGGAGTCACGAACGTGTACCCCAAGAACGACATGGCTGC
ACGCAAGGGATGGGGTGTGGCCGGTGGACGTCAAAAGCATCCCAGGGCCC
AAGTACTTTCCCAGCGTTTCCGGGGCTAATAGAGACCATTGCAGTGCGGA
ATACGGGGTTTTATTCCCCAAGGAACGAAGGTTTCTGAGCAATGCCACCA
GATACCTCAGCAAGGGTCACGAGAGGCAGGCGCGGGGAGTATTTTCGCCT
GGGCCGGCCATGTATGTTGGACACGATGAGATTTTGCCGCTGGCGCCACG
ACCCCCGCCTCCTGCCTCGGCTCCCGGGTCGTCCCGTTGCCGACAACACC
CCCCGTCGTCTAGAACAGCAGGGACTGGAGAAGGAAAGGTCAACGTTGTT
AACAAGCGTTTCCTTCGCAGGCCACGGGCGGTAACAGCGGGTTCTCGTGT
GGAGATTGGTGCAAGAAGAAGACGCCAGCCAGTCTCCGGTACCACCGGAG
CGGGCGCGGGTAGCCCATACATCGGGCTCAAGGAGCAAGGGGCAGCCGAC
AAAATCGTCGGGAAGGCCAACGCGGGGACCACGGGCTGCCCCGTGATACG
TACACTTGTGTCCAGCAGAGGAGAACGAGAAGGCCCAGACGGATGTTTCG
TGACGAGAATGGGTGCAGAGTCTCCCGGGCCGGCCAGCCACTACCCAAAC
GTTTCTTCCATCTCTTCTCGAGGCTGTCCGGTATTTGCCACACCAACGGC
GTTGGATGCAGAGGAATGGGAACGACGTAACAAGAGTTCCAACTCTAAAG
CTCTGCATCATCAGCCTGCGAAGATGTCGGCGATACCCAAGACTTCCCAA
GTTCATCGAAGATGGCCCGCGTATACCCACCTCAGGGACGAAGGTCGGAT
TTCGGGCAACTTGGGGCAAGACAGCCCTGGACCAGGCGCCGTCAATATTG
CTGACCATGACCCTTTCCGAGCGAGTTCGTTCCTGAAAATGGATGTATGC
CACCCGCCACCAGCGTCAAATGCCGCCTCGTTTCCGTGTCGCGTCCCTTT
CGGACAATAA
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