mRNA_Ecto-sp13_S_contig10281.291.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10281.291.1
Unique NamemRNA_Ecto-sp13_S_contig10281.291.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10281.291.1 vs. uniprot
Match: A0A6H5L0G8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0G8_9PHAE)

HSP 1 Score: 515 bits (1326), Expect = 2.420e-175
Identity = 264/307 (85.99%), Postives = 274/307 (89.25%), Query Frame = 1 
Query:    1 RKQGTASSSLDRRAKSFAIRSSRXXXXXXXXXXAPRASRDCSRPRASLDSCKFEANRGSKESVLDSEYLHARQREGMVGASLRSCGGEERIGEKEAEGKRPSCFDHMHNLNGTCTSDVKDEEEGCFAPQTRRGGCDY--RGNRDHSERIMAKEKDVNGENQQRERWSTRGRVLWAAHAEPAARATSIDSRMFPRATMQSCSQPVVRPYRGLYARSLQANGIEPANFRSSRCSCRTTENRQIDGSVLWPDRENEARTRSPVDGLPDRLEAGRVLDSFQRRAELLGKMPPTTLRAKIAWMEKPGDPQYR 915
            RKQGTASSSLDRR KS AIRSSR          APRASRDC+RPRASLD CKFEANRGSKESVLD+ YLHARQREGMVGASLRSCGGEERIGEKE EGKRPSCFD  H+LNGTCTSDVKDEEEGCFAPQTRRG CDY  + NRDH+ERI AKE DVN ENQQRERWSTRGRVLWA HAEPAARAT  DSR++PRATMQSCSQPV+RPY GLYARSLQANGIEPA  RSSRCSC TT+NRQIDGSVLWPDREN ARTRSPVDGLPDRLEAGRVLDSF+RRAELLGKMPPTTLRAK AWMEKPGDPQYR
Sbjct:  318 RKQGTASSSLDRRVKSTAIRSSRSERSEKS---APRASRDCARPRASLDPCKFEANRGSKESVLDNGYLHARQREGMVGASLRSCGGEERIGEKEEEGKRPSCFDSTHHLNGTCTSDVKDEEEGCFAPQTRRGDCDYHRKWNRDHNERITAKEDDVNEENQQRERWSTRGRVLWATHAEPAARATCTDSRIYPRATMQSCSQPVLRPYHGLYARSLQANGIEPAKIRSSRCSCHTTDNRQIDGSVLWPDRENAARTRSPVDGLPDRLEAGRVLDSFERRAELLGKMPPTTLRAKTAWMEKPGDPQYR 621
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BLAST of mRNA_Ecto-sp13_S_contig10281.291.1 vs. uniprot
Match: D7FJI5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJI5_ECTSI)

HSP 1 Score: 511 bits (1316), Expect = 1.540e-173
Identity = 266/308 (86.36%), Postives = 276/308 (89.61%), Query Frame = 1 
Query:    1 RKQGTA-SSSLDRRAKSFAIRSSRXXXXXXXXXXAPRASRDCSRPRASLDSCKFEANRGSKESVLDSEYLHARQREGMVGASLRSCGGEERIGEKEAEGKRPSCFDHMHNLNGTCTSDVKDEEEGCFAPQTRRGGCDYRGN--RDHSERIMAKEKDVNGENQQRERWSTRGRVLWAAHAEPAARATSIDSRMFPRATMQSCSQPVVRPYRGLYARSLQANGIEPANFRSSRCSCRTTENRQIDGSVLWPDRENEARTRSPVDGLPDRLEAGRVLDSFQRRAELLGKMPPTTLRAKIAWMEKPGDPQYR 915
            RKQGTA SSSLDRRAK+ AIRSSR          APRASRDCSRPRASLD CKFEANRGSKESVLD+ YLHARQREGMVGASLRSC GEERIGEKEAEGKRPSCFD  H+LNGT TSDVKDEEEGCFAPQTRRG CDYRG   RDHSERI AK+KDVN EN  RERWSTRGRVLWA HAEPAARATS D+R+FPRATM+SCSQPVVRPY GLYARSLQANGIEPA+FRSSRCSC TTE+RQIDGSVLWPDREN ARTRSPVDGLPDRLEAGRVLDSF+RRAELLGKMPPTTLRAK AWMEKPGDPQYR
Sbjct:  329 RKQGTAASSSLDRRAKNTAIRSSRSERPEQS---APRASRDCSRPRASLDPCKFEANRGSKESVLDNGYLHARQREGMVGASLRSCAGEERIGEKEAEGKRPSCFDSTHHLNGTLTSDVKDEEEGCFAPQTRRGDCDYRGKWVRDHSERITAKKKDVNEENHHRERWSTRGRVLWATHAEPAARATSTDARIFPRATMRSCSQPVVRPYNGLYARSLQANGIEPAHFRSSRCSCHTTEHRQIDGSVLWPDRENAARTRSPVDGLPDRLEAGRVLDSFERRAELLGKMPPTTLRAKTAWMEKPGDPQYR 633
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10281.291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L0G8_9PHAE2.420e-17585.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJI5_ECTSI1.540e-17386.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10281contigEcto-sp13_S_contig10281:4184..5916 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1384
Hectar predicted targeting categoryother localisation
Exons2
Cds size999
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462520.6102152-UTR-Ecto-sp13_S_contig10281:4183..43401681462520.6102152-UTR-Ecto-sp13_S_contig10281:4183..4340Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10281 4184..4340 -
1681462520.639105-UTR-Ecto-sp13_S_contig10281:5688..59161681462520.639105-UTR-Ecto-sp13_S_contig10281:5688..5916Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10281 5689..5916 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462520.6210396-CDS-Ecto-sp13_S_contig10281:4340..46531681462520.6210396-CDS-Ecto-sp13_S_contig10281:4340..4653Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10281 4341..4653 -
1681462520.6291988-CDS-Ecto-sp13_S_contig10281:5002..56881681462520.6291988-CDS-Ecto-sp13_S_contig10281:5002..5688Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10281 5003..5688 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10281.291.1prot_Ecto-sp13_S_contig10281.291.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10281 4341..5688 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10281.291.1

>prot_Ecto-sp13_S_contig10281.291.1 ID=prot_Ecto-sp13_S_contig10281.291.1|Name=mRNA_Ecto-sp13_S_contig10281.291.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=333bp
MVGASLRSCGGEERIGEKEAEGKRPSCFDHMHNLNGTCTSDVKDEEEGCF
APQTRRGGCDYRGNRDHSERIMAKEKDVNGENQQRERWSTRGRVLWAAHA
EPAARATSIDSRMFPRATMQSCSQPVVRPYRGLYARSLQANGIEPANFRS
SRCSCRTTENRQIDGSVLWPDRENEARTRSPVDGLPDRLEAGRVLDSFQR
RAELLGKMPPTTLRAKIAWMEKPGDPQYRLRESRDGLLSSFSGTSPDRRF
AMYASCAGKAYVRPSKVEATTLLAASSGAWDKPFGPSPTKHSVWARREIE
EEVPLFDRRKVADTGGTSFAKASPCNCQIRGG*
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mRNA from alignment at Ecto-sp13_S_contig10281:4184..5916-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10281.291.1 ID=mRNA_Ecto-sp13_S_contig10281.291.1|Name=mRNA_Ecto-sp13_S_contig10281.291.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1733bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10281:4184..5916- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGAAGCAAGGGACTGCAAGCTCATCGTTAGATCGACGGGCAAAAAGCTT
TGCAATCAGAAGCTCTAGGTCAGAGAGATCAGAGAGATCGGAGCAGAGTG
CACCGAGGGCAAGCAGAGATTGTTCTCGTCCAAGGGCAAGTCTCGACTCG
TGCAAATTTGAAGCTAATAGAGGGAGCAAGGAGAGCGTTCTAGACAGCGA
GTACCTGCACGCTCGACAGCGTGAGGGAATGGTCGGGGCATCGCTGAGAA
GCTGCGGGGGTGAGGAACGAATTGGAGAAAAAGAGGCGGAAGGGAAACGA
CCGAGTTGCTTCGATCACATGCACAATTTGAACGGGACTTGTACCTCAGA
TGTAAAGGACGAAGAAGAGGGATGCTTTGCCCCCCAAACGAGGCGTGGTG
GCTGCGATTACCGCGGGAATCGTGACCACAGCGAGAGGATCATGGCGAAA
GAGAAGGATGTAAATGGGGAGAATCAACAGCGCGAGCGGTGGAGCACCAG
GGGAAGGGTGTTATGGGCTGCACACGCAGAGCCTGCAGCGCGAGCGACTT
CCATCGACTCTAGAATGTTCCCTCGAGCGACGATGCAATCGTGTTCGCAG
CCTGTTGTTCGGCCATACCGTGGTCTTTACGCGAGGTCTCTTCAGGCCAA
CGGCATCGAGCCTGCCAACTTCCGGTCGTCACGCTGCTCCTGCCGTACTA
CCGAGAACAGACAGATTGATGGCTCAGTCCTTTGGCCTGATCGGGAGAAC
GAGGCGCGGACTCGGTCACCGGTCGACGGCCTTCCCGACAGGCTCGAAGC
AGGTCGTGTGTTGGACTCGTTCCAACGAAGAGCAGAGCTGCTGGGCAAGA
TGCCGCCTACAACGCTGCGCGCCAAGATCGCTTGGATGGAAAAACCGGGC
GATCCCCAGTACAGGTTTGTCTACGGAACAACGGCGGCGAGGAGAGATGC
ACGTCCATGCCGTGACGCTGGCGTCCATATTGCATTATATTCTTCGCTGT
GTAGAAATGTGCATGTCACGCAGAGTCTTTGTCCACTGCTCAAACGATAC
GATGCCCGTTGGTCGACGTCTTGAGATCATCGATTAAAAAAACGGAGTTG
TCGCCGGTTGATTTTTGTTTTCGCACACGTCAAGACTCCGGAGGAAGACG
AGCATGTCGGCTTTATTCGCACTAAACTACATTACCACTCCCGTATCCGC
CGTGGCCTCATAGCTATGTTCGTTCTCGTTCTAACCTTTCTCCGACAATT
TTGCACAATCAAGGCTACGGGAGAGCCGGGACGGACTGCTTTCCTCGTTC
AGCGGGACTTCCCCTGACCGGCGGTTCGCCATGTACGCTTCATGCGCCGG
GAAAGCCTATGTCCGCCCCTCCAAGGTAGAGGCGACGACCTTACTGGCCG
CATCATCAGGCGCCTGGGACAAGCCATTCGGGCCAAGTCCGACGAAGCAC
TCTGTTTGGGCGAGAAGAGAAATTGAGGAGGAGGTGCCACTCTTTGATCG
ACGGAAAGTGGCCGACACTGGGGGTACGTCCTTCGCCAAGGCTTCCCCTT
GCAACTGCCAAATACGAGGGGGTTGATCATGAGGGATACATCACAAGCCT
TCAACCGCAACCTCTGTGCGCTGAATCTTGCGGGCACACCGCGCGTGCCG
ATACTAAATGTAGTGTGTCATGTAAGGGGAACTATATCCCATCTGGAGGG
GGATCGGCGCGTTTCATCGGCCGTCCTGCGATT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10281:4184..5916-

>mRNA_Ecto-sp13_S_contig10281.291.1 ID=mRNA_Ecto-sp13_S_contig10281.291.1|Name=mRNA_Ecto-sp13_S_contig10281.291.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=999bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10281:4184..5916- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCGGGGCATCGCTGAGAAGCTGCGGGGGTGAGGAACGAATTGGAGA
AAAAGAGGCGGAAGGGAAACGACCGAGTTGCTTCGATCACATGCACAATT
TGAACGGGACTTGTACCTCAGATGTAAAGGACGAAGAAGAGGGATGCTTT
GCCCCCCAAACGAGGCGTGGTGGCTGCGATTACCGCGGGAATCGTGACCA
CAGCGAGAGGATCATGGCGAAAGAGAAGGATGTAAATGGGGAGAATCAAC
AGCGCGAGCGGTGGAGCACCAGGGGAAGGGTGTTATGGGCTGCACACGCA
GAGCCTGCAGCGCGAGCGACTTCCATCGACTCTAGAATGTTCCCTCGAGC
GACGATGCAATCGTGTTCGCAGCCTGTTGTTCGGCCATACCGTGGTCTTT
ACGCGAGGTCTCTTCAGGCCAACGGCATCGAGCCTGCCAACTTCCGGTCG
TCACGCTGCTCCTGCCGTACTACCGAGAACAGACAGATTGATGGCTCAGT
CCTTTGGCCTGATCGGGAGAACGAGGCGCGGACTCGGTCACCGGTCGACG
GCCTTCCCGACAGGCTCGAAGCAGGTCGTGTGTTGGACTCGTTCCAACGA
AGAGCAGAGCTGCTGGGCAAGATGCCGCCTACAACGCTGCGCGCCAAGAT
CGCTTGGATGGAAAAACCGGGCGATCCCCAGTACAGGCTACGGGAGAGCC
GGGACGGACTGCTTTCCTCGTTCAGCGGGACTTCCCCTGACCGGCGGTTC
GCCATGTACGCTTCATGCGCCGGGAAAGCCTATGTCCGCCCCTCCAAGGT
AGAGGCGACGACCTTACTGGCCGCATCATCAGGCGCCTGGGACAAGCCAT
TCGGGCCAAGTCCGACGAAGCACTCTGTTTGGGCGAGAAGAGAAATTGAG
GAGGAGGTGCCACTCTTTGATCGACGGAAAGTGGCCGACACTGGGGGTAC
GTCCTTCGCCAAGGCTTCCCCTTGCAACTGCCAAATACGAGGGGGTTGA
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