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Homology
BLAST of mRNA_Ecto-sp13_S_contig13697.2909.1 vs. uniprot
Match: D8LMZ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMZ6_ECTSI) HSP 1 Score: 774 bits (1998), Expect = 2.680e-271 Identity = 431/496 (86.90%), Postives = 436/496 (87.90%), Query Frame = 1
Query: 1 QSILTEYMDEYAWPSSLPAPGRRGKRSGMGVDHVGRLLAGRRAEEPARKLPDPAVVARLGAAADRALRAGSLGHLSEMCRLKSPPLACRRLMLGLVMALGLRWRRWSDIRTHLLGNKPELQGFLKRFNKDRAGLASAALLPFVEDPSLSPAEVRRVAACMVWVSRWLHALHDYLAVKEGKELDLDTMPMFQESAASRSRATSARRRQSSGWRAHGTVPGTVLGTVPPDGESKGRERRRLGAGEGGSGTQPRISGTAVAAGATAATMGLSEQKHDEDHHHGRGGMRKTLRPSRAAATRGDDSTCPPGSTPTGGDTEGGARREGFRYFGEEGRVGASGKVDVDGDLESESQWTVGTVTSRGDVLRTPTEDQVDIGSSVVVGDGKENVRKAPDKHAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRAGT-TLGFEETLAPKKGGRGGSVRRGLSRGDTQASHACIYRHKHKGRTPSRFANPKVQGTV 1485
QSILTEYMDEYAWPSSLPAPGRRGKRSGMGVDHVGRLLAGRRAEEPARKLPDPAVVARLGAAADRAL AGSLGHLSEMCRLKSPPLACRRLMLGLV+ALGLRWRRWSDIRTHLLGNKPELQGFLKRFNKDRAGLAS ALLPFVEDPSLSPAEVRRVAACMVWV RWLHALHDYLAVKEGKELD+DTMPMFQE A SRSRA ARRRQSSG RAHGTVPGTV PPDG SKGRE RR GAGEGGSGTQPR SGTA AAGATAATMGLSEQKHD+ HHHGRGG RKT RPSRAAATRGDDSTCPPGSTPTGGDTEGG+R EGFRYFGE GR G GKVDVDGDLESESQWTVGTVTSRGDVLRTPTEDQVDIGSSVVVG GK NVRKAP KHAGXXXXXXXXXXXXXX RRAGT TLGFEETLAPK GGR GSVRRGLSRGDTQASHACIYRHKHKGRTPSR ANPK + V
Sbjct: 484 QSILTEYMDEYAWPSSLPAPGRRGKRSGMGVDHVGRLLAGRRAEEPARKLPDPAVVARLGAAADRALGAGSLGHLSEMCRLKSPPLACRRLMLGLVIALGLRWRRWSDIRTHLLGNKPELQGFLKRFNKDRAGLASTALLPFVEDPSLSPAEVRRVAACMVWVPRWLHALHDYLAVKEGKELDVDTMPMFQEPATSRSRAKLARRRQSSGCRAHGTVPGTV----PPDGASKGREGRRPGAGEGGSGTQPRKSGTAAAAGATAATMGLSEQKHDQGHHHGRGGTRKTRRPSRAAATRGDDSTCPPGSTPTGGDTEGGSRGEGFRYFGEGGRGGDGGKVDVDGDLESESQWTVGTVTSRGDVLRTPTEDQVDIGSSVVVGGGKGNVRKAPHKHAGXXXXXXXXXXXXXXGVPASPPRRRVRSTGDAA-------RRAGTGTLGFEETLAPK-GGRRGSVRRGLSRGDTQASHACIYRHKHKGRTPSRVANPKARRPV 967
BLAST of mRNA_Ecto-sp13_S_contig13697.2909.1 vs. uniprot
Match: A0A6H5JPQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPQ9_9PHAE) HSP 1 Score: 64.3 bits (155), Expect = 2.730e-9 Identity = 32/50 (64.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query: 1336 LAPKKGGRGGSVRRGLSRGDTQASHACIYRHKHKGRTPSRFANPKVQGTV 1485
++P K G + R GLSRG TQ SHACIYRHK KGRTPSR ANPK + V
Sbjct: 1 MSPLKEGPRRAARGGLSRGGTQVSHACIYRHKLKGRTPSRVANPKARRPV 50
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 0 |
| Start | 1 |
| Model size | 1485 |
| Hectar predicted targeting category | other localisation |
| Exons | 8 |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-16_001210.1 |
| Cds size | 1464 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462731.202707-CDS-Ecto-sp13_S_contig13697:138..276 | 1681462731.202707-CDS-Ecto-sp13_S_contig13697:138..276 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig13697 139..276 - |
| 1681462731.2119362-CDS-Ecto-sp13_S_contig13697:958..1229 | 1681462731.2119362-CDS-Ecto-sp13_S_contig13697:958..1229 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig13697 959..1229 - |
| 1681462731.2218707-CDS-Ecto-sp13_S_contig13697:1689..2018 | 1681462731.2218707-CDS-Ecto-sp13_S_contig13697:1689..2018 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig13697 1690..2018 - |
| 1681462731.2312107-CDS-Ecto-sp13_S_contig13697:2587..2840 | 1681462731.2312107-CDS-Ecto-sp13_S_contig13697:2587..2840 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig13697 2588..2840 - |
| 1681462731.2411299-CDS-Ecto-sp13_S_contig13697:3109..3226 | 1681462731.2411299-CDS-Ecto-sp13_S_contig13697:3109..3226 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig13697 3110..3226 - |
| 1681462731.2507539-CDS-Ecto-sp13_S_contig13697:3697..3769 | 1681462731.2507539-CDS-Ecto-sp13_S_contig13697:3697..3769 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig13697 3698..3769 - |
| 1681462731.2638462-CDS-Ecto-sp13_S_contig13697:4084..4243 | 1681462731.2638462-CDS-Ecto-sp13_S_contig13697:4084..4243 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig13697 4085..4243 - |
| 1681462731.2727525-CDS-Ecto-sp13_S_contig13697:4429..4554 | 1681462731.2727525-CDS-Ecto-sp13_S_contig13697:4429..4554 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig13697 4430..4554 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462731.2810144-UTR-Ecto-sp13_S_contig13697:4554..4575 | 1681462731.2810144-UTR-Ecto-sp13_S_contig13697:4554..4575 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig13697 4555..4575 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13697.2909.1 >prot_Ecto-sp13_S_contig13697.2909.1 ID=prot_Ecto-sp13_S_contig13697.2909.1|Name=mRNA_Ecto-sp13_S_contig13697.2909.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=488bp
MDEYAWPSSLPAPGRRGKRSGMGVDHVGRLLAGRRAEEPARKLPDPAVVA RLGAAADRALRAGSLGHLSEMCRLKSPPLACRRLMLGLVMALGLRWRRWS DIRTHLLGNKPELQGFLKRFNKDRAGLASAALLPFVEDPSLSPAEVRRVA ACMVWVSRWLHALHDYLAVKEGKELDLDTMPMFQESAASRSRATSARRRQ SSGWRAHGTVPGTVLGTVPPDGESKGRERRRLGAGEGGSGTQPRISGTAV AAGATAATMGLSEQKHDEDHHHGRGGMRKTLRPSRAAATRGDDSTCPPGS TPTGGDTEGGARREGFRYFGEEGRVGASGKVDVDGDLESESQWTVGTVTS RGDVLRTPTEDQVDIGSSVVVGDGKENVRKAPDKHAGGGGGGGGGGGGGG GGRSLSSSGVPASPPRRKVRSTGGAARRAGTTLGFEETLAPKKGGRGGSV RRGLSRGDTQASHACIYRHKHKGRTPSRFANPKVQGTV back to topmRNA from alignment at Ecto-sp13_S_contig13697:139..4575- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig13697.2909.1 ID=mRNA_Ecto-sp13_S_contig13697.2909.1|Name=mRNA_Ecto-sp13_S_contig13697.2909.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4437bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13697:139..4575- (Ectocarpus species13 EcNAP12_S_4_19m) CAGTCGATACTGACGGAGTACATGGACGAGTACGCTTGGCCATCGAGCCT
CCCGGCTCCCGGTCGACGCGGGAAAAGGAGCGGGATGGGGGTTGATCACG
TGGGGCGTCTCCTGGCGGGAAGGCGCGCCGAAGAGCCCGCTAGGAAGTGA
GGGAGCAAACGTCACCACCCTTACTCCTGTAAATACGTTGCCCCGACGCT
GTCGTTCTATGTCAATGGGTTGCCGAGCAGAGAGGAAAGCACTAATATCA
TCCGACCGACGCCGACTCTTACCTACCCCCCCCACGCGCGGGAATGTTAT
TGCTGGGTCTCTCCCCTGCCCTGCTGCTCCAGGCTGCCCGATCCTGCTGT
TGTTGCTCGGCTGGGAGCCGCGGCCGATCGGGCCCTTAGGGCCGGCAGCC
TCGGGCACCTCTCGGAGATGTGTCGCCTCAAGTCGCCCCCGCTGGCGTGT
CGCAGGCTGATGTTGGGGCTTGTGATGGCCTTAGGGCTCAGGTAGGTTGA
TTATGCTCCTTTTTTTTTAGGCCGACTTGTTGTTTGATGTTAGTAGGCCT
TGTGCGCCTCAAGCCACCGATTTCCTCCCTGGGGGGGGGCGGGGCGTACC
AATGTAAACGCATGACGTAGTCGTAAGACCATCCATAGACCTCACATCGG
ACCGCCTCAAACCACAAACCCGGGTGGGGGTGTACGCATATACACGCAGG
GGTGTAATCATACCCGCGAAGTATTGTTTCTTTTCGCCGATGACTTTCTC
ACTCGCTGTTGGATATGTCCTCTTTACTATCATACTGTGTTCTGCGGGCT
CTTTAGGTGGAGGCGGTGGAGCGACATCCGAACGCACCTCTTGGGGAACA
AGCCGGAGCTGCAGGGTTTCTTAAAGAGGTGGGAAGGCGCTTCGTGGGAG
TTTTACGGTGTTCGAGCTCTTTCCTCCTAGGTCTATTCATGTTGTTGCGA
TTGCGGAAGGCGTCCGTCTGATAGAGTTATACCGATACGGGTGTTAGAAG
GTACGGAGCAGAGGCCGGAACGGTTTTACCGTGGCAGACAGCAACTCAAG
CAACACTCCGCCGTTCGGCAATGTCGTCGGCGAAGATGTTGCGATGCACG
GGGCTAGATAAACTTGCGGGGTACCTCGACCGCATTGTACTCAAGGGAGT
GGCATCAACAAATACATTCTTCCAAGTTGAAATCTCGGAAGAAAATAGCA
ATGAAGGTGTTTTGCAACACAAGCAATAGTGTTTTTTGTTGGAAGAAAAC
ACCTCAGCGCTGTTGCAGATGCTGCTAAGTGGTGTTGCTTACTACTGTTG
GTGTCATGAACGCCTGCTGACGACATGCCTCGGCCACTGCCCTCGCCAGG
TTCAACAAGGACCGAGCCGGTCTCGCTTCCGCGGCGCTTCTTCCGTTCGT
GGAAGACCCCAGCCTATCCCCCGCCGAAGTCCGACGGGTGGCGGCGTGCA
TGGTCTGGGTGTCCCGGTGGGTGCATAAGGGCTGTGCAGGTTGAGGTCGT
GGAACGGTCCGTCGGCTAAGGCGGCACCGTCCGTGAAGTCGTAGTGCTTT
CCGTACTTTCCGTACCTCCCTCCGCAAGAACCCCTCAAGACTATCATTCG
CAACACCGACACCCTTCCGGCTGCACTGAGGACGAGGAAATGTGTCGGCC
TTGGTTGCGTTTGGTGAAGGATGCCTGACGGTGGGCGCATGCGCCAGATT
GTAAACAATCGCGCGTCGTCTTTCGGTGCGTACAGGTGGCTCCACGCCCT
CCACGACTACCTGGCGGTGAAGGAGGGGAAGGAGCTCGATTTGGACACCA
TGCCCATGTTTCAGGAGTCCGCCGCCTCTCGTTCCCGCGCTACGTCAGCG
CGTCGACGACAGAGCAGCGGCTGGCGGGCTCACGGAACGGTTCCGGGAAC
GGTTCTTGGAACGGTTCCCCCGGATGGGGAGAGCAAGGGAAGGGAGAGGC
GGAGACTGGGGGCTGGTGAAGGCGGCAGTGGGACACAGGTGACACAGGGC
AGCGCTAAGATTGTAAGACGTTGCCGGGGGGGGGGGGAGGCGTGTAGTCA
GCCTGGTGCGCGGCTCCTGCGTGTGAGATATGCCGCGTAAAAATGGGCGG
CAGCGCTGAGTGTCAAGACCTAGGGGTTAGGGCGTCAAATGTATCGATGG
CAAGGTTGGCAGTGCGGTGGGCTAGATAATGGTCAATGTGTGAGAGAGTT
TCGTCGTTGCATGCTTTGAGAATGTCGCCGATTAGATGACAGAACGACAT
ATTGCCAGGCCAAGTCTTGGTGTGATAAACTCGTTTGCTGCCCTATACCC
CGTTAGGGTAACGCGGGAGGGGATGCTTGGAGCTTGGCTACAAGTCGCTT
TGGTAGGTCCGTGCTTCCGAAGTACTTTGTAGATCGTGAGACGCCGCCTC
CGCCCCCGGTGCGGCCGTTCAGGTTTATGGCTTTCCCTCTTTTCGTGGCC
ACTTCGCTCGACGGGAACGTTTTTTCAGACAACACCAACAACACGTATCG
ATCGACATTTCGTTCTCAACCATGCGCCTCACTCACTCCCTGTCGACCAA
TCAACAGCCGAGAATATCTGGCACCGCTGTAGCAGCAGGAGCAACGGCTG
CAACAATGGGTTTGAGCGAACAGAAACATGACGAAGACCACCACCACGGA
CGGGGGGGCATGCGGAAAACTCTGCGTCCTTCGCGGGCGGCGGCCACCAG
GGGGGATGATTCCACGTGCCCCCCGGGGTCTACGCCGACCGGCGGCGATA
CCGAGGGGGGGGCGAGGCGGGAGGGTTTCCGGTATTTTGGAGAGGAAGGG
AGGGTTGGCGCCAGCGGAAAAGTTGACGTTGACGGGGATCTCGAGAGCGA
GTCGCAGTGGACAGTGGGAACTGTCACCTCACGAGGGTGAGAAAGGACGT
ATGTGATAACGATGGGATGGGAGAGTTTGGAGTAAGATTTGGCGGTCCTA
CTGTACGGCGTGGTCTTGGTTGGTGGGGCGTGGAGGGCTGGGATGGTTCA
GGCCAGAGGTCGCCGAAAGATAGGGGTCGTGTGACACGTGATTTGACACG
ATGTGTCGAAGAGAGCGTTGGCGGCGGACAAATCCACCCTTCGGTATTGC
TTGTGTTGGCTGCCAGCCATGACGCTACACACGATGTTGGAGCAGTGCTT
TGTCGAGAACTGGCAAACAATGTACCACACCCTCCCTCCCACTGACGAAC
CTGGTCCGGTAAAACCCGGCGTGCTCCGTCTTTGTAGGGATGCGAGATCA
ATGGTCTAACGACTACAGTATGCACGACTATGATTACATGCCCCCTCGAT
CCCCCTGACCAACCCCTCCCATATACTGCCTTTTCCAAAACGCCAGGGAC
GTGCTTCGAACTCCCACCGAAGATCAGGTAGATATCGGGAGCAGTGTGGT
GGTCGGGGATGGGAAAGAGAACGTCCGAAAGGCCCCTGACAAGCATGCTG
GCGGCGGCGGCGGCGGCGGTGGCGGCGGCGGCGGTGGCGGCGGTGGCAGA
TCATTGTCTTCTTCGGGAGTGCCAGCGTCACCCCCGAGGCGAAAGGTGCG
GAGCACTGGTGGTGCAGCCAGAAGGGCTGGCACGACGTTGGGTTTCGAGG
AGACGCTGGCCCCCAAGGTGCGAGAGTAGATGGATGAGTAGGGATGTGCT
CATTGCCGTGCATGTGACGAGAAGGGGTGGGAGAGGAGACAACAGTGCTA
CTGCTGCAGATAGATTCCCTTTTGTAGTACAATTATTTCGCGTCCCTAGG
ATTGGTGCACTCCTGTAGTATACGTTCGATTTATGCGAGAATATTTGCGT
TGGGCTGTAGGTAAAACGCGGCAACAGGTGTGTTTGCGTGCAAACGAGAC
TGGCAGCAATAAGTATCTTCCCACGATGCCGCATGATTACGGAGAATGCT
TCTTGTAACCTCCCCGGCCCCACGCACTTTTTTTGCTAACTTTAGAAGGA
CCTGGATGGGTGGAAGAACAAAAAGAAAAAGCGAGCCTCACCCCGTATCC
GAAAAGGAACTGTGATCCGGTCTCGCTTGTATTAGCTTATAGTGAGGAGC
CTTGTCTCGCGGGAAGACACAGTCATGATGGCCGAGGAGAGTTTTGTGGG
CGTTCGTACACCCGCGTTCCACCGCAAACAGACAAGGGACAGCGTTCCTA
AAGATGAGAATGACCTGTCTGTGTCGATGGGTTTCCACCCCGGTGTTCTC
CGATTTCCTTACGGAAGGTTGCTGCTCCTGCTTCTCGTATGTGGACCCTC
CGTTTTCAACGTTGATTTTCGGCTTTTTCGATTTCGGTGTCGCCGCAAGA
AGGGGGGGCGAGGGGGCTCCGTGAGGAGAGGGCTGTCGCGAGGGGATACT
CAGGCGTCGCATGCTTGCATCTACCGGCACAAGCACAAGGGACGGACGCC
GTCTCGCTTCGCCAACCCAAAGGTACAAGGTACAGTG back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig13697:139..4575- >mRNA_Ecto-sp13_S_contig13697.2909.1 ID=mRNA_Ecto-sp13_S_contig13697.2909.1|Name=mRNA_Ecto-sp13_S_contig13697.2909.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1464bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13697:139..4575- (Ectocarpus species13 EcNAP12_S_4_19m) ATGGACGAGTACGCTTGGCCATCGAGCCTCCCGGCTCCCGGTCGACGCGG GAAAAGGAGCGGGATGGGGGTTGATCACGTGGGGCGTCTCCTGGCGGGAA GGCGCGCCGAAGAGCCCGCTAGGAAGCTGCCCGATCCTGCTGTTGTTGCT CGGCTGGGAGCCGCGGCCGATCGGGCCCTTAGGGCCGGCAGCCTCGGGCA CCTCTCGGAGATGTGTCGCCTCAAGTCGCCCCCGCTGGCGTGTCGCAGGC TGATGTTGGGGCTTGTGATGGCCTTAGGGCTCAGGTGGAGGCGGTGGAGC GACATCCGAACGCACCTCTTGGGGAACAAGCCGGAGCTGCAGGGTTTCTT AAAGAGGTTCAACAAGGACCGAGCCGGTCTCGCTTCCGCGGCGCTTCTTC CGTTCGTGGAAGACCCCAGCCTATCCCCCGCCGAAGTCCGACGGGTGGCG GCGTGCATGGTCTGGGTGTCCCGGTGGCTCCACGCCCTCCACGACTACCT GGCGGTGAAGGAGGGGAAGGAGCTCGATTTGGACACCATGCCCATGTTTC AGGAGTCCGCCGCCTCTCGTTCCCGCGCTACGTCAGCGCGTCGACGACAG AGCAGCGGCTGGCGGGCTCACGGAACGGTTCCGGGAACGGTTCTTGGAAC GGTTCCCCCGGATGGGGAGAGCAAGGGAAGGGAGAGGCGGAGACTGGGGG CTGGTGAAGGCGGCAGTGGGACACAGCCGAGAATATCTGGCACCGCTGTA GCAGCAGGAGCAACGGCTGCAACAATGGGTTTGAGCGAACAGAAACATGA CGAAGACCACCACCACGGACGGGGGGGCATGCGGAAAACTCTGCGTCCTT CGCGGGCGGCGGCCACCAGGGGGGATGATTCCACGTGCCCCCCGGGGTCT ACGCCGACCGGCGGCGATACCGAGGGGGGGGCGAGGCGGGAGGGTTTCCG GTATTTTGGAGAGGAAGGGAGGGTTGGCGCCAGCGGAAAAGTTGACGTTG ACGGGGATCTCGAGAGCGAGTCGCAGTGGACAGTGGGAACTGTCACCTCA CGAGGGGACGTGCTTCGAACTCCCACCGAAGATCAGGTAGATATCGGGAG CAGTGTGGTGGTCGGGGATGGGAAAGAGAACGTCCGAAAGGCCCCTGACA AGCATGCTGGCGGCGGCGGCGGCGGCGGTGGCGGCGGCGGCGGTGGCGGC GGTGGCAGATCATTGTCTTCTTCGGGAGTGCCAGCGTCACCCCCGAGGCG AAAGGTGCGGAGCACTGGTGGTGCAGCCAGAAGGGCTGGCACGACGTTGG GTTTCGAGGAGACGCTGGCCCCCAAGAAGGGGGGGCGAGGGGGCTCCGTG AGGAGAGGGCTGTCGCGAGGGGATACTCAGGCGTCGCATGCTTGCATCTA CCGGCACAAGCACAAGGGACGGACGCCGTCTCGCTTCGCCAACCCAAAGG TACAAGGTACAGTG back to top
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