mRNA_Ecto-sp13_S_contig13695.2907.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13695.2907.1
Unique NamemRNA_Ecto-sp13_S_contig13695.2907.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13695.2907.1 vs. uniprot
Match: D7FYS0_ECTSI (Tub domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYS0_ECTSI)

HSP 1 Score: 635 bits (1637), Expect = 9.570e-225
Identity = 311/320 (97.19%), Postives = 314/320 (98.12%), Query Frame = 1
Query:    1 GNGGESGGERDCVDAAASDDSFSDNIVSSKRRYCGKGEGMATGRCGGDETTEEDGGRGKDSWASIVEGGRSPARCNSLMLSYERGNNSDLVQCVVVRDRSGMNRLYPQYRFFFEGRGDQLMMVAQKCSKNRTSNYHVFDMNRGGFQTRLSKKNGNYLGKVRTNLKRTEAIVFTNDQAIAELGAISFEKPGLVDHLRDGSQPRKFTVLLPALDCDGSPVAHKVDPYDADSDMLSRMKQGRHGNMFLLQSREPTYTKGNYRLNFHGRVTVPSVKNFQLVSPDDTLHTVCQFGKVGEDRFHLDYRAPINAFQALCISIAQFNF 960
            GNGGESGGERD VDAAASDDSFSDNIVSS+RR+CGKGEGM TGRCGGDETTEEDGGRGKDSWASIVEGGRSPARC SLMLSYERGNNSDLVQCVVVRDRSGMNRLYPQYRFFFEGRGDQLMMVAQKCSKNRTSNYHVFDMNRGGFQTRLSKKNGNYLGKVRTNLKRTEA VFTNDQ +AELGAISFEKPGLVDHLRDGSQPRKFTVLLPALDCDGSPVAHKVDPYDADSDMLSRMKQGRHGNMFLLQSREPTYTKGNYRLNFHGRVTVPSVKNFQLVSPDD LHTVCQFGKVGEDRFHLDYRAPINAFQALCISIAQFNF
Sbjct:  275 GNGGESGGERDGVDAAASDDSFSDNIVSSQRRFCGKGEGMVTGRCGGDETTEEDGGRGKDSWASIVEGGRSPARCKSLMLSYERGNNSDLVQCVVVRDRSGMNRLYPQYRFFFEGRGDQLMMVAQKCSKNRTSNYHVFDMNRGGFQTRLSKKNGNYLGKVRTNLKRTEATVFTNDQEVAELGAISFEKPGLVDHLRDGSQPRKFTVLLPALDCDGSPVAHKVDPYDADSDMLSRMKQGRHGNMFLLQSREPTYTKGNYRLNFHGRVTVPSVKNFQLVSPDDALHTVCQFGKVGEDRFHLDYRAPINAFQALCISIAQFNF 594          
BLAST of mRNA_Ecto-sp13_S_contig13695.2907.1 vs. uniprot
Match: A0A835Z9X0_9STRA (Tubby C-terminal-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9X0_9STRA)

HSP 1 Score: 315 bits (807), Expect = 3.200e-104
Identity = 146/231 (63.20%), Postives = 184/231 (79.65%), Query Frame = 1
Query:  268 LVQCVVVRDRSGMNRLYPQYRFFFEGRGDQLMMVAQKCSKNRTSNYHVFDMNRGGFQTRLSKKNGNYLGKVRTNLKRTEAIVFTNDQAIAELGAISFEKPGLVDHLRDGSQPRKFTVLLPALDCDGSPVAHKVDPYDADSDMLSRMKQGRHGNMFLLQSREPTYTKGNYRLNFHGRVTVPSVKNFQLVSPDDTLHTVCQFGKVGEDRFHLDYRAPINAFQALCISIAQFNF 960
            ++QCV++R+R G++RLYP Y+ +F+ R D LMM AQK SK+RTSNYH+FDM+RG     LSKK GNYLGKVR+N K+T+  ++TNDQ   ELGA+ FEKPGLVDH+ +GSQPRKF VLLP +D D +P+ HKVDPYD    M+  +K  R G MFLLQ+++P +  GNYRLNF GRVTVPSVKNFQLV+PDD  + V QFGKVG+DRFHLD+RAP+NAFQA  I+++QFNF
Sbjct:    1 MMQCVILRERQGLHRLYPLYKLYFQDR-DTLMMAAQKHSKSRTSNYHIFDMHRGSAARTLSKKGGNYLGKVRSNFKKTDNTIYTNDQEKEELGAVLFEKPGLVDHVMEGSQPRKFYVLLPPIDADSTPIPHKVDPYDPQGPMVELLKARRTGKMFLLQTKDPVFENGNYRLNFRGRVTVPSVKNFQLVAPDDVDYIVGQFGKVGDDRFHLDFRAPLNAFQAFAIALSQFNF 230          
BLAST of mRNA_Ecto-sp13_S_contig13695.2907.1 vs. uniprot
Match: A0A7S3YIB9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YIB9_HETAK)

HSP 1 Score: 306 bits (785), Expect = 1.200e-100
Identity = 145/236 (61.44%), Postives = 182/236 (77.12%), Query Frame = 1
Query:  253 GNNSDLVQCVVVRDRSGMNRLYPQYRFFFEGRGDQLMMVAQKCSKNRTSNYHVFDMNRGGFQTRLSKKNGNYLGKVRTNLKRTEAIVFTNDQAIAELGAISFEKPGLVDHLRDGSQPRKFTVLLPALDCDGSPVAHKVDPYDADSDMLSRMKQGRHGNMFLLQSREPTYTKGNYRLNFHGRVTVPSVKNFQLVSPDDTLHTVCQFGKVGEDRFHLDYRAPINAFQALCISIAQFNF 960
            G  +++V+C VVRDR+G  RLYPQYR +F+   D L +VAQK SKNRTSNYH+FDM R GF   LSKKNGNYLGK+R+N K+TE ++FTND    ELGAI+FEK G +D +++GSQPRK  ++LP LD DG P+ +K +    ++ +LSR+K G+ G MF  +S++P + KGNYRLNFHGRVTV SVKNFQLVSPDD  + VCQFGKV EDRFHLDYRAP NAFQA  +++ QFNF
Sbjct:   12 GAGAEMVRCAVVRDRTGARRLYPQYRMYFQDT-DTLALVAQKQSKNRTSNYHIFDMMRAGFGNHLSKKNGNYLGKLRSNSKKTENVIFTNDHEKEELGAITFEKTGFMDQVKEGSQPRKLKIILPQLDPDGIPLPNKPERGRPETSLLSRVKIGQTGRMFYFESKDPVFEKGNYRLNFHGRVTVASVKNFQLVSPDDIDYVVCQFGKVDEDRFHLDYRAPFNAFQAFAVTLCQFNF 246          
BLAST of mRNA_Ecto-sp13_S_contig13695.2907.1 vs. uniprot
Match: A0A7S2V188_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V188_9STRA)

HSP 1 Score: 273 bits (699), Expect = 3.530e-88
Identity = 128/209 (61.24%), Postives = 161/209 (77.03%), Query Frame = 1
Query:  334 FFEGRGDQLMMVAQKCSKNRTSNYHVFDMNRGGFQTRLSKKNGNYLGKVRTNLKRTEAIVFTNDQAIAELGAISFEKPGLVDHLRDGSQPRKFTVLLPALDCDGSPVAHKVDPYDADSDMLSRMKQGRHGNMFLLQSREPTYTKGNYRLNFHGRVTVPSVKNFQLVSPDDTLHTVCQFGKVGEDRFHLDYRAPINAFQALCISIAQFNF 960
            +F+ R DQL+MV +K ++NRT NYH+FDM R  F   LSKKNGNYLGK+RTNL++T+ I++TND    E+GAI F KPG VD +++GSQPRK  VLLP LD DG PV +K +P   D+ +L R++  + G MF LQ+++P + KGNYRLNFHGRVTV SVKNFQL SPDD  + VCQFGKV EDRFHLDYRAP+NAFQA  +++ QFNF
Sbjct:    2 YFQDR-DQLVMVGKKQAQNRTPNYHIFDMTRAQFGNHLSKKNGNYLGKLRTNLRKTDTIIYTNDAEREEMGAIIFNKPGFVDQVKEGSQPRKLHVLLPQLDADGVPVPNKPNPRRPDTSLLERLRSAKTGKMFCLQTKDPVFEKGNYRLNFHGRVTVASVKNFQLCSPDDIDYVVCQFGKVDEDRFHLDYRAPLNAFQAFALALVQFNF 209          
BLAST of mRNA_Ecto-sp13_S_contig13695.2907.1 vs. uniprot
Match: A0A7S2GC62_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GC62_9STRA)

HSP 1 Score: 232 bits (592), Expect = 1.740e-71
Identity = 106/241 (43.98%), Postives = 163/241 (67.63%), Query Frame = 1
Query:  253 GNNSDLVQCVVVRDRSGMNRLYPQYRFFFEGR----GDQLMMVAQKCSKNRTSNYHVFDMNRGGFQTRLSKKNGNYLGKVRTNLKRTEAIVFTNDQAIAELGAISFEKPGLVDHLRDGSQPRKFTVLLPALDCDGSPVAHKVDPYDADSDMLSRMKQGR-HGNMFLLQSREPTYTKGNYRLNFHGRVTVPSVKNFQLVSPDDTLHTVCQFGKVGEDRFHLDYRAPINAFQALCISIAQFNF 960
            G N  +VQC++VRDRSG+ RL P+Y  + +G      ++L+++A+K +     +YH+++++RG    RL KK GNY+GK++ +  + E +++ N++   E+GA+ F KP ++DH+RDG+QPRK  V+LP  D +  P+  K    D  + +L +++  +       L+ +EP +  GNYRLNFHGRVTVPSVKNFQLV P D    +CQFGKV +DRFHLD++ P+N FQA C+++AQFN+
Sbjct:    7 GPNDPMVQCLIVRDRSGLKRLNPEYNLYLQGGRKKGSEKLILIARKQAHKNGCSYHIYNVSRGHMGGRLRKKGGNYVGKLKCSGTKIENVMYNNEEVKDEIGAVLFAKPTIMDHMRDGAQPRKLKVVLPPADENSLPIPQKNKFNDPYAGLLGQLQSDQLEEGCRQLERKEPVFENGNYRLNFHGRVTVPSVKNFQLVDPRDVADVICQFGKVDDDRFHLDFKGPLNPFQAFCVALAQFNY 247          
BLAST of mRNA_Ecto-sp13_S_contig13695.2907.1 vs. uniprot
Match: A0A7S2D0G1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D0G1_9STRA)

HSP 1 Score: 232 bits (592), Expect = 9.740e-69
Identity = 106/241 (43.98%), Postives = 163/241 (67.63%), Query Frame = 1
Query:  253 GNNSDLVQCVVVRDRSGMNRLYPQYRFFFEGR----GDQLMMVAQKCSKNRTSNYHVFDMNRGGFQTRLSKKNGNYLGKVRTNLKRTEAIVFTNDQAIAELGAISFEKPGLVDHLRDGSQPRKFTVLLPALDCDGSPVAHKVDPYDADSDMLSRMKQGR-HGNMFLLQSREPTYTKGNYRLNFHGRVTVPSVKNFQLVSPDDTLHTVCQFGKVGEDRFHLDYRAPINAFQALCISIAQFNF 960
            G N  +VQC++VRDRSG+ RL P+Y  + +G      ++L+++A+K +     +YH+++++RG    RL KK GNY+GK++ +  + E +++ N++   E+GA+ F KP ++DH+RDG+QPRK  V+LP  D +  P+  K    D  + +L +++  +       L+ +EP +  GNYRLNFHGRVTVPSVKNFQLV P D    +CQFGKV +DRFHLD++ P+N FQA C+++AQFN+
Sbjct:  226 GPNDPMVQCLIVRDRSGLKRLNPEYNLYLQGGRKKGSEKLILIARKQAHKNGCSYHIYNVSRGHMGGRLRKKGGNYVGKLKCSGTKIENVMYNNEEVKDEIGAVLFAKPTIMDHMRDGAQPRKLKVVLPPADENSLPIPQKNKFNDPYAGLLGQLQSDQLEEGCRQLERKEPVFENGNYRLNFHGRVTVPSVKNFQLVDPRDVADVICQFGKVDDDRFHLDFKGPLNPFQAFCVALAQFNY 466          
BLAST of mRNA_Ecto-sp13_S_contig13695.2907.1 vs. uniprot
Match: A0A7S2H5B0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H5B0_9STRA)

HSP 1 Score: 206 bits (523), Expect = 6.250e-59
Identity = 97/236 (41.10%), Postives = 160/236 (67.80%), Query Frame = 1
Query:  268 LVQCVVVRDRSGMNRLYPQYRFFFEG---RG-DQLMMVAQKCSKNRTSNYHVFDMNRGGFQTRLSKKNGNYLGKVRTNLKRTEAIVFTNDQAIAELGAISFEKPGLVDHLRDGSQPRKFTVLLPALDCDGSPVAHKVDPYDADSDMLSRMKQGR-HGNMFLLQSREPTYTKGNYRLNFHGRVTVPSVKNFQLVSPDDTLHTVCQFGKVGEDRFHLDYRAPINAFQALCISIAQFNF 960
            +VQC++VR R  + R+  +Y+ + +G   +G ++L++VA+K ++ +  +YH+++++RG    RL+KK GNY+GK++ +  + E +++ N++   E+G + F KP ++DH+RDG+QPRK  +++P ++    P+   V   D    +L++++         + + +EP +  GNYRLNF GRVTVPSVKNFQLVS DD     CQFGKV +DRFHLD++ P+NAFQA C+ +AQFN+
Sbjct:  194 MVQCLIVRRRVVLQRI-TEYQLYLQGGRKKGHEKLILVARKQAQKQGCSYHIYNVSRGHLGGRLNKKGGNYVGKLKCSGSKIENVMYNNEEKKQEVGGVMFMKPSIMDHMRDGAQPRKLKLIVPPINEKNCPIPQPVKFNDPYGGLLAQIQVDEIEQGCSVFERKEPVFENGNYRLNFRGRVTVPSVKNFQLVSTDDVSDIKCQFGKVADDRFHLDFKHPMNAFQAFCVCLAQFNY 428          
BLAST of mRNA_Ecto-sp13_S_contig13695.2907.1 vs. uniprot
Match: A0A1W0A956_9STRA (Tub domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A956_9STRA)

HSP 1 Score: 194 bits (494), Expect = 1.620e-55
Identity = 107/236 (45.34%), Postives = 152/236 (64.41%), Query Frame = 1
Query:  265 DLVQCVVVRDRSGMNRLYPQYRFFFEGRGDQLMMVAQKCSKNRTSNYHVFDMNRGGFQT--RLSKKNGNYLGKVRTNLKRTEAIVFTNDQAIAELGAISFEKPGLVDHLRDGSQPRKFTVLLPAL--DCDGSPVAHKVDPYDADSDMLSRMKQGRHGNMFLLQSREPTYTKGNYRLNFHGRVTVPSVKNFQLVSPDDTLHTVCQFGKVGEDRFHLDYRAPINAFQALCISIAQFNF 960
            +L +  +VR   G NRL PQY+FF +   ++L+++AQK  KNRTSNYH+FDM+ G      +LSKK+GNY+GK+R+   R E ++ ++ +   ELGAI+FE           S+PRK TV+ P L  D D   V  KVD +   S ++ ++K G+  ++ +L+++EP Y KG YRLNF+GRV+VPSVKNFQLV        + QFGKV +  FHLD+R P+  FQA  I++ QFNF
Sbjct:  126 NLTEGSIVRCNQGANRLTPQYQFFVK---NKLVLLAQKQLKNRTSNYHIFDMSCGTVAASHKLSKKSGNYIGKLRSCFGRHENVMISSQEEKRELGAITFETKS------SHSKPRKLTVICPGLTKDGDAKSVPSKVDSF---SSLVEQLKLGQTSDLIVLENKEPEYEKGCYRLNFNGRVSVPSVKNFQLVLRGTKQGVILQFGKVSDKLFHLDFRHPLTPFQAFAIALCQFNF 349          
BLAST of mRNA_Ecto-sp13_S_contig13695.2907.1 vs. uniprot
Match: A0A482S955_9ARCH (Tub domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S955_9ARCH)

HSP 1 Score: 190 bits (483), Expect = 4.320e-55
Identity = 107/251 (42.63%), Postives = 150/251 (59.76%), Query Frame = 1
Query:  232 LMLSYERGNNSDLVQCVVVRDRSGMN-RLYPQYRFFFEGRGDQLMMVAQKCSKNRTSNYHVFDMNRGGFQTRLSKKNGNYLGKVRT-NLKRTEAIVFTNDQAIAELGAISFEKPGLVDHLRDGSQPRKFTVLLPALDCDGSPVAHKVDPYDADSDMLSRM-------KQGRHGNMFLLQSREPTYTKGNYRLNFHGRVTVPSVKNFQLVSPDDTLHTVCQFGKVGEDRFHLDYRAPINAFQALCISIAQFN 957
            +++++ RG  +  +QC VVRDR+ +  +LYP Y    E    + ++ A K S NRTSNYH+FDM RG   ++LSKK GNYLGK+R  N  R E  +  +     EL  +SFEK  L++ L +G+QPRK  +L+   D   +     V P +  S  LS +       K+    NM LL+++EP    GNYRLNF GRV +PSVKNFQ+V   +    +CQFGKV ED FHLD++ P NA +A  +++ QFN
Sbjct:    2 VLVAHPRGVRNQHIQCTVVRDRNSVGGKLYPSYELILEN-PRKTIIKACKMSYNRTSNYHLFDMTRGTAGSKLSKKAGNYLGKLRARNTNRLECSLLNHKADKEELMGVSFEKMTLINQLTEGTQPRKMRILILRPDV-VTGTTEGVYPSNFGSPSLSDLLLDVVDRKKSLPENMMLLETKEPVLENGNYRLNFFGRVNLPSVKNFQIVHYSNIDEILCQFGKVEEDMFHLDFKTPFNALEAFALALCQFN 250          
BLAST of mRNA_Ecto-sp13_S_contig13695.2907.1 vs. uniprot
Match: T0Q607_SAPDV (Tub domain-containing protein n=3 Tax=Saprolegnia TaxID=4769 RepID=T0Q607_SAPDV)

HSP 1 Score: 191 bits (486), Expect = 4.300e-54
Identity = 104/231 (45.02%), Postives = 145/231 (62.77%), Query Frame = 1
Query:  268 LVQCVVVRDRSGMNRLYPQYRFFFEGRGDQLMMVAQKCSKNRTSNYHVFDMNRGGFQTRLSKKNGNYLGKVRTNLKRTEAIVFTNDQAIAELGAISFEKPGLVDHLRDGSQPRKFTVLLPALDCDGSPVAHKVDPYDADSDMLSRMKQGRHGNMFLLQSREPTYTKGNYRLNFHGRVTVPSVKNFQLVSPDDTLHTVCQFGKVGEDRFHLDYRAPINAFQALCISIAQFNF 960
            L +  +VR   G NRL PQY+FF +   ++L+++AQK   NRTSNYH+FDM+RG    +LSKK+GNY+GK+R++  R E ++ +      ELGAI FE      H    S+PRK TV+ P L   G          DA S +  ++K GR  ++ +L +++P Y KG YRLNF+GRV+VPSVKNFQLV        + QFGKV +  FHLD+R P+  FQA  I+++QFN+
Sbjct:  150 LTEGSIVRCNHGANRLTPQYQFFIK---NKLVLLAQKQLNNRTSNYHIFDMSRGAASYKLSKKSGNYIGKLRSSFGRQENVMISAQAEKRELGAILFETK--TSH----SKPRKLTVICPGLTSSGE-AKSVPSKGDAFSSLAEQVKLGRTSDLVILDNKDPEYEKGCYRLNFNGRVSVPSVKNFQLVLRGTKQGVILQFGKVSDKLFHLDFRHPMTPFQAFSIALSQFNY 370          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13695.2907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYS0_ECTSI9.570e-22597.19Tub domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835Z9X0_9STRA3.200e-10463.20Tubby C-terminal-like domain-containing protein n=... [more]
A0A7S3YIB9_HETAK1.200e-10061.44Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V188_9STRA3.530e-8861.24Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2GC62_9STRA1.740e-7143.98Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2D0G1_9STRA9.740e-6943.98Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2H5B0_9STRA6.250e-5941.10Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A1W0A956_9STRA1.620e-5545.34Tub domain-containing protein n=1 Tax=Thraustothec... [more]
A0A482S955_9ARCH4.320e-5542.63Tub domain-containing protein (Fragment) n=1 Tax=a... [more]
T0Q607_SAPDV4.300e-5445.02Tub domain-containing protein n=3 Tax=Saprolegnia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13695contigEcto-sp13_S_contig13695:2..3151 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score568.9
Seed ortholog evalue1.3e-159
Seed eggNOG ortholog2880.D7FYS0
Model size1107
KEGG koko:K19600
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.phosphatidylinositol binding
EggNOG OGsKOG2502@1,KOG2502@2759
Ec32 ortholog descriptionTubby C-terminal-like domain
Ec32 orthologEc-19_002290.1
Cds size846
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13695.2907.1prot_Ecto-sp13_S_contig13695.2907.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13695 119..3007 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462731.0313678-UTR-Ecto-sp13_S_contig13695:1..1181681462731.0313678-UTR-Ecto-sp13_S_contig13695:1..118Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13695 2..118 +
1681462731.1040854-UTR-Ecto-sp13_S_contig13695:3007..31511681462731.1040854-UTR-Ecto-sp13_S_contig13695:3007..3151Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13695 3008..3151 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462731.042458-CDS-Ecto-sp13_S_contig13695:118..2951681462731.042458-CDS-Ecto-sp13_S_contig13695:118..295Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13695 119..295 +
1681462731.0517833-CDS-Ecto-sp13_S_contig13695:738..8851681462731.0517833-CDS-Ecto-sp13_S_contig13695:738..885Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13695 739..885 +
1681462731.061058-CDS-Ecto-sp13_S_contig13695:1410..15011681462731.061058-CDS-Ecto-sp13_S_contig13695:1410..1501Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13695 1411..1501 +
1681462731.075291-CDS-Ecto-sp13_S_contig13695:1957..21181681462731.075291-CDS-Ecto-sp13_S_contig13695:1957..2118Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13695 1958..2118 +
1681462731.0849113-CDS-Ecto-sp13_S_contig13695:2359..25391681462731.0849113-CDS-Ecto-sp13_S_contig13695:2359..2539Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13695 2360..2539 +
1681462731.0944855-CDS-Ecto-sp13_S_contig13695:2917..30071681462731.0944855-CDS-Ecto-sp13_S_contig13695:2917..3007Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13695 2918..3007 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13695.2907.1

>prot_Ecto-sp13_S_contig13695.2907.1 ID=prot_Ecto-sp13_S_contig13695.2907.1|Name=mRNA_Ecto-sp13_S_contig13695.2907.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=282bp
MATGRCGGDETTEEDGGRGKDSWASIVEGGRSPARCNSLMLSYERGNNSD
LVQCVVVRDRSGMNRLYPQYRFFFEGRGDQLMMVAQKCSKNRTSNYHVFD
MNRGGFQTRLSKKNGNYLGKVRTNLKRTEAIVFTNDQAIAELGAISFEKP
GLVDHLRDGSQPRKFTVLLPALDCDGSPVAHKVDPYDADSDMLSRMKQGR
HGNMFLLQSREPTYTKGNYRLNFHGRVTVPSVKNFQLVSPDDTLHTVCQF
GKVGEDRFHLDYRAPINAFQALCISIAQFNF*
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mRNA from alignment at Ecto-sp13_S_contig13695:2..3151+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13695.2907.1 ID=mRNA_Ecto-sp13_S_contig13695.2907.1|Name=mRNA_Ecto-sp13_S_contig13695.2907.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13695:2..3151+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCAACGGCGGCGAAAGTGGCGGCGAACGTGATTGTGTTGATGCTGCTGC ATCCGACGACTCGTTCTCGGACAATATCGTCAGCTCCAAACGGCGCTACT GTGGCAAAGGTGAAGGGATGGCGACAGGGCGGTGCGGCGGAGACGAGACC ACTGAAGAAGATGGTGGCCGTGGCAAAGACTCTTGGGCGAGTATCGTCGA AGGGGGACGGTCGCCTGCTCGCTGCAATTCGCTCATGCTTTCGTACGAGA GGGGGAACAACTCGGACTTGGTGCAGTGCGTCGTCGTGCGTGATGTGAGT ACACGTTAACGCGATCGACAAAGACATACTAGATCCCCCCGTGAAATGAT GCGAGAAAATGACTACAGTACAGTAGGTCTAGACGTCCCTGGTCGGTCCC CTCCTTGGGAATGAGTCGAGTGCTGAGTTTACATCAAGATCAAATTGCGT TGCTGTTACCAGGGAACGGTTGAACAATATCCTCGTTTTGTGACTGTCGT GGGGGTATCGTTTGCTCCAATAGGACCATAGCCAGCGTGCTGTAGCGCTT CTTTCTATGGCCTCGCGTCCTATATTCCCGCATCAATAACGCAACAAGCG TTCTCACTGTTAATCTTGCACACGAACGCGTACATGCTCACCATCCGTGC ACGCACCCGGGAGGGGCCGTCACGTTCCGGCCGCCTAACCCCAAGCCGCC ACAAACTCCCTCCATGCCCCCTGTTGCATTCTCGCAGCGCTCTGGAATGA ACCGCCTGTATCCTCAATACCGCTTCTTCTTCGAGGGGCGAGGAGACCAG CTCATGATGGTGGCGCAGAAGTGCAGCAAAAACCGCACGAGCAACTACCA CGTCTTCGACATGAACCGAGGAGGTTTCCAAACGGTGAGCTTCCGGCATG TGAAGAAGGGCGAAGTGGTCTCACCTCGCCATGGCACGAGGACTTGATCG GAGAGGGGAATCAATTCGGTTCCGCTGCAAGACCACCTCTGTACTTCACT TGAAAATATAGAAATTGGTGTTAACGCTTCTAGACGCTAAAGGTGGAAGG TTGGGTGGGCAATCAGCTCATAAACGACATAAGATAACTGACACAGCAGT GTCAGCTGACCCTCGGTCAGGGCGATCCGCAAGCACCCGTACCTCGTACA CGATGTCGACTTTACTCACAGGCAACAACAAACGTGCCTTACGTCTGACA ATTTTGACCCGTCGATCCGAAAACACGAAAACAAGAAATTGCGGTTGTTT TCACGCGGTTATTTTCACGGTCATGTCTTCTGTAGGTACGCACACGCTGA GAGGCGTATCTCTGCTTTCCAACACGCATGTCTCTAGGGATCGACTGTAC TCCTCAAGTTATCCAGTCTTTCACCGCTGGTTACTTGCGTCCGTTTGTTT GCCCCACAGCGTCTGAGCAAGAAGAACGGGAACTACTTGGGAAAAGTGAG GACTAACCTTAAGAGGACGGAGGCTATCGTCTTCACCAACGACCAGGCAA GTAAACAACGACCAGGCAAGTAACCTGGGTACACAAGAAATCTGTCGGGA AAAAAATCGAAACAGGCGCGCTGTGCTGTACACATCGTGATTTCACCGTT GTTTCGTATCGTCACAATATGCCACACCCACGAAACGAAGTCAACCACAT CGCAATGACGTGATATTCCGCGACACGATTATTGCAGGATGATCCATTTC AACGTTTCCTCGGACGATTGGCGGGTGCATTCGGCGGGGATGGTTGTATC GGCGAGAGGATCACACGATTTTTCAAGCCACCAACCACGGCAGCTTTTGT CGCAGACTCCCCGTTATAGGTTTAGTGTGTCGGTATCGATTGGGCCAGCC TCACTCTTGTAGGTTGTCGGGACCACGACCTCGACCTCTATTCGTTACCG AACAACGCTCCAACGTTTGCGAAACCCGAATCCAAAAAAATACTTCTTGC AGGAAGTCGCCGAGCTTGGGGCGATTTCGTTCGAAAAGCCTGGTCTGGTC GACCACTTGCGAGATGGAAGCCAGCCTAGGAAGTTCACGGTTCTGTTGCC TGCCCTAGATTGCGACGGCTCGCCCGTCGCACACAAGGTGGACCCTTACG ACGCGGACAGCGACATGGTGAGAATAGAAAACGGCGAACGTCGCCGTGTG GCCTCTCTAGACTAGGCTATGCCTCCTGGGCTCGTGGTGTTGCCGCTCTC ATAATGGTGGTGCTGGTTGAATCAAGACGGAGCCGATTCGGGCTGCTCAT AGAGTCTGTGGAATATTGTCGGGGCGAACGGGCAAGTTGCCAGCACATTC GAACCCCGTTCCCCTCACCGACCTTTTTGCCCCCCTGTCCCTCGCACCCT CCTTGCAGCTGTCGCGCATGAAGCAAGGCCGGCACGGCAACATGTTTCTT CTTCAGTCGAGGGAGCCGACCTACACTAAAGGAAACTACCGCCTCAACTT CCACGGGCGTGTGACGGTGCCGTCCGTGAAGAACTTCCAGCTCGTCAGCC CCGACGATACACTCCACACCGTGTGCCAGTTTGGAAAGGTACGCACCAGA ATTGGCGGCGGGAAGTAGGAGCCCAGCTTGGTGTGAAGTGGTCTTGCACA TACCTGGTGTGTACAAACGTACAAAAAAATCTGGTACTGCTGTATGCAGC AGGTAGATGTGAAGTATCACTGCGGCATTGTGTTTGTCAGGAGCACATGG AAAGATGGTGCGTGATCAGACCGCGTGAAAGCAAATGCTTCGCTGGTTAC TGGCGATCCGGCTTGAGCCAGAAGCGTACCAAGAATCTTGAGAACATTAT CGCCGATCAGGAGACAATCCGATTATGTATTTCAATAAAGCGGGTCATCT AGAGAGAGATGGATGCGCACGCGTTTGTAAAACCTAGAAAATTTGTCTTG CGCCGATGATCTGCAGGTGGGAGAGGATCGGTTCCACTTGGACTACCGCG CCCCCATCAACGCCTTCCAAGCCTTGTGTATCTCCATTGCGCAGTTCAAC TTCTGATGTGCAGAGGACTGCGGTTTCCTCCCTCGAGCATGACAGAAGAA GCGGCCTTTCGCACGCAAAAACTGGATACCCGGTGGAACGTATGATACAG CGCTGAAGGACGTTGGTCACCTGGATAAGGATGACCGCCCGTCGGAAAAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13695:2..3151+

>mRNA_Ecto-sp13_S_contig13695.2907.1 ID=mRNA_Ecto-sp13_S_contig13695.2907.1|Name=mRNA_Ecto-sp13_S_contig13695.2907.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=846bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13695:2..3151+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGACAGGGCGGTGCGGCGGAGACGAGACCACTGAAGAAGATGGTGG
CCGTGGCAAAGACTCTTGGGCGAGTATCGTCGAAGGGGGACGGTCGCCTG
CTCGCTGCAATTCGCTCATGCTTTCGTACGAGAGGGGGAACAACTCGGAC
TTGGTGCAGTGCGTCGTCGTGCGTGATCGCTCTGGAATGAACCGCCTGTA
TCCTCAATACCGCTTCTTCTTCGAGGGGCGAGGAGACCAGCTCATGATGG
TGGCGCAGAAGTGCAGCAAAAACCGCACGAGCAACTACCACGTCTTCGAC
ATGAACCGAGGAGGTTTCCAAACGCGTCTGAGCAAGAAGAACGGGAACTA
CTTGGGAAAAGTGAGGACTAACCTTAAGAGGACGGAGGCTATCGTCTTCA
CCAACGACCAGGCAATCGCCGAGCTTGGGGCGATTTCGTTCGAAAAGCCT
GGTCTGGTCGACCACTTGCGAGATGGAAGCCAGCCTAGGAAGTTCACGGT
TCTGTTGCCTGCCCTAGATTGCGACGGCTCGCCCGTCGCACACAAGGTGG
ACCCTTACGACGCGGACAGCGACATGCTGTCGCGCATGAAGCAAGGCCGG
CACGGCAACATGTTTCTTCTTCAGTCGAGGGAGCCGACCTACACTAAAGG
AAACTACCGCCTCAACTTCCACGGGCGTGTGACGGTGCCGTCCGTGAAGA
ACTTCCAGCTCGTCAGCCCCGACGATACACTCCACACCGTGTGCCAGTTT
GGAAAGGTGGGAGAGGATCGGTTCCACTTGGACTACCGCGCCCCCATCAA
CGCCTTCCAAGCCTTGTGTATCTCCATTGCGCAGTTCAACTTCTGA
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