mRNA_Ecto-sp13_S_contig13694.2906.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13694.2906.1
Unique NamemRNA_Ecto-sp13_S_contig13694.2906.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13694.2906.1 vs. uniprot
Match: D7FYI3_ECTSI (Hsp90 chaperone protein kinase-targeting subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYI3_ECTSI)

HSP 1 Score: 369 bits (948), Expect = 2.650e-125
Identity = 198/204 (97.06%), Postives = 201/204 (98.53%), Query Frame = 1 
Query:    1 LQRRQREEKEQEQNARKAELEKEIKAGLARVAELEQRAAAVKAEGGDVDGEDPVALTVEAEELQKAVEAKKKEVESIERNKTWNWENMCHVTEERTIINKSADSEAKDTTMRSALPPKLAAALGEKPRAVTAPGPETTTQEVQSYSDFVQEHEGVMEKYSELHSMEKTRDFLRQHGDILFADHCQSYLLLSCLEDEMNGKHERM 612
            L+RRQREEKEQEQNARKAELEK IKAGLARVAELEQR+AAVKAEGGDVDGEDPVALTVEAEELQKAVEAK+KEVESIERNKTWNWENMCHVTEERTIINKSADSEAKDTTMRSALPPKLAAALGEKPRAVTAPGPETTTQEV SYSDFVQEHE VMEKYSELHSMEKTRDFLRQHGDILFADHCQSYLLLSCLEDEMNGKHERM
Sbjct:   34 LKRRQREEKEQEQNARKAELEKGIKAGLARVAELEQRSAAVKAEGGDVDGEDPVALTVEAEELQKAVEAKRKEVESIERNKTWNWENMCHVTEERTIINKSADSEAKDTTMRSALPPKLAAALGEKPRAVTAPGPETTTQEVHSYSDFVQEHEDVMEKYSELHSMEKTRDFLRQHGDILFADHCQSYLLLSCLEDEMNGKHERM 237
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13694.2906.1 vs. uniprot
Match: A0A836C784_9STRA (Hsp90 chaperone protein kinase-targeting subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C784_9STRA)

HSP 1 Score: 177 bits (449), Expect = 2.760e-50
Identity = 94/185 (50.81%), Postives = 129/185 (69.73%), Query Frame = 1 
Query:   58 LEKEIKAGLARVAELEQRAAAVKAEGGDVDGEDPVALTVEAEELQKAVEAKKKEVESIERNKTWNWENMCHVTEERTIINKSADSEAKDTTMRSALPPKLAAAL-GEKPRAVTAPGPETTTQEVQSYSDFVQEHEGVMEKYSELHSMEKTRDFLRQHGDILFADHCQSYLLLSCLEDEMNGKHER 609
            LEK     L R  +L++   AVK+     + EDP+A++ E + L++A+E + K ++ IE+NK WNWENMCHV EERTI++     + KD T+ S LPPKLAAA+ G K      PGP +  QEV SYS FV+ +E ++E++SE+ SMEKT++FL + G +LFA+H Q+YLLLSCLEDEMNGKH R
Sbjct:   52 LEKSNSTDLKRAMKLKELLHAVKSGEAQDETEDPIAISNELKALEEAMEKRHKRLQEIEKNKKWNWENMCHVVEERTIVSAEKAGDGKDNTVHSELPPKLAAAIAGGKAAVKPVPGPASVKQEVTSYSQFVEAYEELLERFSEIASMEKTQEFLLKDGQVLFAEHAQNYLLLSCLEDEMNGKHTR 236
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13694.2906.1 vs. uniprot
Match: A0A7S2XXR3_9STRA (Hsp90 chaperone protein kinase-targeting subunit n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXR3_9STRA)

HSP 1 Score: 140 bits (353), Expect = 3.310e-36
Identity = 84/185 (45.41%), Postives = 120/185 (64.86%), Query Frame = 1 
Query:   88 RVAELEQRAAAVKAEGGDVDGEDPV---ALTVEAEELQKAVEAKKKEVESIERNKTWNWENMCHVTEERTIINKSADSEA---KDTTMRSALPPKLA--AALGEKPRAVTAP--GPETTTQEVQSYSDFVQEHEGVMEKYSELHSMEKTRDFLRQHGDILFADHCQSYLLLSCLEDEMNGKHERM 612
            RVA +  +  A+ A G   + E+PV   AL  E ++LQ  ++ + + +E +ERNK WN +NMCHV EERTIIN +  S+    KDT  R     + A  A  G   + VT    GP+  TQEV+SY+ F ++HE ++E++S + SMEK++ +L ++GDIL A+H QSYLLL+CLEDEMN KH+RM
Sbjct:   71 RVASIVAKLTAIPAAGAGAEEEEPVDREALEAELKDLQGVIDRRNERLEEMERNKKWNVDNMCHVVEERTIINPALGSQEGTIKDTMYRDPNMKEQADGAEDGAPVQTVTTAVKGPKPETQEVESYAIFTRKHENMLEEFSVMTSMEKSQQYLHENGDILLAEHAQSYLLLACLEDEMNAKHDRM 255
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13694.2906.1 vs. uniprot
Match: A0A7S2FGF6_9STRA (Hsp90 chaperone protein kinase-targeting subunit n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FGF6_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.650e-27
Identity = 63/137 (45.99%), Postives = 88/137 (64.23%), Query Frame = 1 
Query:  220 VESIERNKTWNWENMCHVTEERTIINKSADSEAKDTTMRSALPPKLAAA--LGEKPRAVTAP----GPETTTQEVQSYSDFVQEHEGVMEKYSELHSMEKTRDFLRQHGDILFADHCQSYLLLSCLEDEMNGKHERM 612
            ++ +E NK WN +NMCHV EERTI+     S   DTT  S LP  L  A    E  RA  A     GP T  +E+++Y+DFV E+E ++EK+ + HS+E  ++ + Q+GD+L  ++  SYLLLSCLE+EMNG HE+M
Sbjct:  107 LDEMEANKKWNVDNMCHVVEERTIV-----SNKSDTTKTSELPAHLVEAQLAREAARAAEAGEVPVGPRTERREIENYADFVTEYEDLLEKFIDTHSIEDCKEMMHQNGDVLLQENASSYLLLSCLEEEMNGNHEKM 238
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13694.2906.1 vs. uniprot
Match: A0A7R9YE37_9STRA (Hsp90 chaperone protein kinase-targeting subunit n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YE37_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.300e-23
Identity = 74/223 (33.18%), Postives = 105/223 (47.09%), Query Frame = 1 
Query:   88 RVAELEQRAAAVKAEGGDVDGEDPVALTVEAEELQKAVEAKKKEVESIERNKTWNWENMCHVTEERTIINKSAD-------------SEAKDTTMRSALPPKLAAA--LGE--------KPRA-------------------------VTAPGPETTTQEVQSYSDFVQEHEGVMEKYSELHSMEKTRDFLRQHGDILFADHCQSYLLLSCLEDEMNGKHERM 612
            R+AE++     V+    +   EDP A+  E ++L +  + +   +E +E+N+ WNWENMCH  EE T I+ SA+              +A+ T    A      A    GE        KPR                            A GP T  +E++ Y+ FV+ HE ++E + +  S+EKT+  LR H  IL  +H  SYLLLSCLEDEMNG H RM
Sbjct:   95 RIAEIDANLKLVEDGRAEEVDEDPDAMQAEKQQLLELNKERSDRLEHMEKNRKWNWENMCHTVEETTTISASAEVGETGAGAPKRILKQARGTNQAPAASSASTATSTAGEASTKKAAAKPRXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAGPATEGEELEGYTSFVEAHESLLETFIDTESVEKTQQLLRDHPTILLKEHASSYLLLSCLEDEMNGNHSRM 317
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13694.2906.1 vs. uniprot
Match: A0A7S3ZZJ3_9STRA (Hsp90 chaperone protein kinase-targeting subunit n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZZJ3_9STRA)

HSP 1 Score: 102 bits (253), Expect = 4.160e-22
Identity = 68/197 (34.52%), Postives = 107/197 (54.31%), Query Frame = 1 
Query:   22 EKEQEQNARKAELEKEIKAGLARVAELEQRAAAVKAEGGDVDGEDPVALTVEAEELQKAVEAKKKEVESIERNKTWNWENMCHVTEERTIINKSADSEAKDTTMRSALPPKLAAALGEKPRAVTAPGPETTTQEVQSYSDFVQEHEGVMEKYSELHSMEKTRDFLRQHGDILFADHCQSYLLLSCLEDEMNGKHERM 612
            E+E+ +   K  +EKE KA   R  E+ +  A V++ G   + ED  AL  E EE++  V+ +  +++ +E+NK WN +N+ H   +RTI+  S    +K+  +   +        G K       GP++    V +Y+DFV +HE V+E Y     +E  +  L +HG  L  +H QSY+LLSCLEDEMNG  ++M
Sbjct:   42 EREETEKMEKTAMEKENKADSEREREIVRLLAEVRSGGDAAEYEDEDALVGELEEVRGRVKDRLDKIDFMEKNKKWNVDNLSHTATDRTIL--SGKGSSKEDLVGGMM-------TGTKSNKDGPVGPQSEKAAVNAYADFVDKHEQVLEDYLATTELEDCKKKLHEHGGTLLHEHAQSYILLSCLEDEMNGFPDKM 229
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13694.2906.1 vs. uniprot
Match: A0A7S3NDY3_9STRA (Hsp90 chaperone protein kinase-targeting subunit n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NDY3_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 6.030e-21
Identity = 66/193 (34.20%), Postives = 104/193 (53.89%), Query Frame = 1 
Query:   49 KAELEKEIKAGLARVAELEQRAAAVKAEGGDVDGEDPVALTVEAEELQKAVEAKKKEVESIERNKTWNWENMCHVTEERTIIN--KSAD-SEAKDTTMRSALPPKLAAALGEKPRAVTAP--GPETTTQEVQSYSDFVQEHEGVMEKYSELHSMEKTRDFLRQHGDILFADHCQSYLLLSCLEDEMNGKHERM 612
            K  + KE +    R+ E+E   A ++  G   + ED  AL  E  EL   ++ + +++  +E N+ WN +N+CH   ++TII+  KS+D SE ++ ++ S            K  +      GPE+    V SY+ FV+ HE  M+++     ++  +  L Q+G IL  +H QSY LLSCLEDEMNG HE+M
Sbjct:   51 KISMRKENEQNSKRIKEIEALLAEIERGGEAAEYEDSEALESEKAELALKIQERLEKIAYMEENRKWNIDNICHTASDKTIISNTKSSDPSELREGSLLSGXXXXXXXXXXXKQSSYKKKNFGPESEKDAVLSYAKFVEHHEAEMDEFLACIDLDDAKKLLHQNGGILLHEHAQSYALLSCLEDEMNGFHEKM 243
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13694.2906.1 vs. uniprot
Match: A0A6U3R563_9STRA (Hsp90 chaperone protein kinase-targeting subunit n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3R563_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.650e-19
Identity = 60/173 (34.68%), Postives = 93/173 (53.76%), Query Frame = 1 
Query:  220 VESIERNKTWNWENMCHVTEERTIINKSADSEAKDTTMRSALPP------------------KLAAALGEK-----------------------PRAVTAP-GPETTTQEVQSYSDFVQEHEGVMEKYSELHSMEKTRDFLRQHGDILFADHCQSYLLLSCLEDEMNGKHERM 612
            ++  E+NK WN +N+CHV EERTI+N  A +E+K T    A+P                   K+A+A  +                        P+A+T P GPET +  + SY DF  ++  ++EK+  + S++K+++FL  HGDIL  ++  +YLLL+ LEDEMNG H++M
Sbjct:  116 LDEYEKNKKWNVDNICHVVEERTIVNPKA-AESKFTPTGYAVPDEDVVVETEKTVEKKEETEKVASAAAKPXXXXXXXXXXXXXXXXXXXXXXXPKAITKPAGPETESNVMMSYHDFTLKYADLVEKFMSIQSLDKSKEFLLLHGDILLQENASNYLLLASLEDEMNGFHDKM 287
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13694.2906.1 vs. uniprot
Match: F0Y5X3_AURAN (Hsp90 chaperone protein kinase-targeting subunit (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5X3_AURAN)

HSP 1 Score: 94.4 bits (233), Expect = 2.130e-19
Identity = 68/197 (34.52%), Postives = 106/197 (53.81%), Query Frame = 1 
Query:   22 EKEQEQNARKAELEKEIKAGLARVAELEQRAAAVKAEGGDVDGEDPVALTVEAEELQKAVEAKKKEVESIERNKTWNWENMCHVTEERTIINKSADSEAKDTTMRSALPPKLAAALGEKPRAVTAPGPETTTQEVQSYSDFVQEHEGVMEKYSELHSMEKTRDFLRQHGDILFADHCQSYLLLSCLEDEMNGKHERM 612
            E+E  + A +  +E E +A   R +E+ +  A +KA G   + ED  AL+ E  E++  V+ +  +++ +E+NK WN +NM  VT  +TII+    S+  D  +R A                           V+SYS+FV+EHE V+E Y     +E+ +  + +HG  L  +H QSY+LLSCLEDEMNG H++M
Sbjct:   36 EREDTEAADRKSMEAENRADGERESEILRILAEIKAGGEAAEYEDEEALSGELVEVRTRVKERVDKIDFMEKNKKWNVDNMGTVTHNKTIISGKG-SDPSD--LRDA---------------------------VESYSNFVEEHEAVLEDYLATRDIEQCKGKIHEHGGTLLHEHAQSYILLSCLEDEMNGYHDKM 202
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13694.2906.1 vs. uniprot
Match: A0A7S3Q7H6_9STRA (Hsp90 chaperone protein kinase-targeting subunit n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q7H6_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 9.830e-18
Identity = 60/194 (30.93%), Postives = 96/194 (49.48%), Query Frame = 1 
Query:  187 LQKAVEAKKKEVESIERNKTWNWENMCHVTEERTIINKSADSE---------------AKDTTMRSALPP---KLAAALGEK----------------------------------PRAVTAPGPETTTQEVQSYSDFVQEHEGVMEKYSELHSMEKTRDFLRQHGDILFADHCQSYLLLSCLEDEMNGKHERM 612
            L+ A EA+  +++  E+NK WN +NMCHV EERTI+N +A ++               AK+   +  + P   K+ +  GEK                                  P+A    GP+  +  + SY DF +++   ME++  + S++KTR+FL  HGDI+  ++  +YLLL+ LEDEMNG  ++M
Sbjct:   99 LKSANEARDAKLDEYEKNKKWNVDNMCHVVEERTIVNPNAATDKFSNTGYALPLDSPDAKEEKPKKIITPPTTKVKSTEGEKTSSSNSAAPKVKKVDSTPVPPSNSKVKPAPAQIVPKAKAKAGPDHASISMLSYHDFTEKYASTMEEFMAVSSLDKTREFLILHGDIMLQENASNYLLLASLEDEMNGFRDKM 292
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13694.2906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYI3_ECTSI2.650e-12597.06Hsp90 chaperone protein kinase-targeting subunit n... [more]
A0A836C784_9STRA2.760e-5050.81Hsp90 chaperone protein kinase-targeting subunit n... [more]
A0A7S2XXR3_9STRA3.310e-3645.41Hsp90 chaperone protein kinase-targeting subunit n... [more]
A0A7S2FGF6_9STRA1.650e-2745.99Hsp90 chaperone protein kinase-targeting subunit n... [more]
A0A7R9YE37_9STRA1.300e-2333.18Hsp90 chaperone protein kinase-targeting subunit n... [more]
A0A7S3ZZJ3_9STRA4.160e-2234.52Hsp90 chaperone protein kinase-targeting subunit n... [more]
A0A7S3NDY3_9STRA6.030e-2134.20Hsp90 chaperone protein kinase-targeting subunit n... [more]
A0A6U3R563_9STRA1.650e-1934.68Hsp90 chaperone protein kinase-targeting subunit n... [more]
F0Y5X3_AURAN2.130e-1934.52Hsp90 chaperone protein kinase-targeting subunit (... [more]
A0A7S3Q7H6_9STRA9.830e-1830.93Hsp90 chaperone protein kinase-targeting subunit n... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13694contigEcto-sp13_S_contig13694:118..4642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score373.2
Seed ortholog evalue7.5e-101
Seed eggNOG ortholog2880.D7FYI3
Preferred nameCDC37
Model size612
KEGG koko:K09554
KEGG Pathwayko04151,map04151
Hectar predicted targeting categoryother localisation
GOsGO:0000079,GO:0000161,GO:0000165,GO:0000226,GO:0000793,GO:0001726,GO:0001932,GO:0001934,GO:0001959,GO:0002576,GO:0002682,GO:0003674,GO:0003824,GO:0004672,GO:0004713,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0005886,GO:0006457,GO:0006464,GO:0006468,GO:0006605,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006887,GO:0006950,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008022,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009987,GO:0010468,GO:0010506,GO:0010508,GO:0010562,GO:0010604,GO:0010608,GO:0010638,GO:0010646,GO:0010821,GO:0010822,GO:0012505,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0016239,GO:0016241,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018108,GO:0018193,GO:0018212,GO:0019207,GO:0019209,GO:0019220,GO:0019222,GO:0019538,GO:0019887,GO:0019899,GO:0019900,GO:0019901,GO:0022402,GO:0022607,GO:0023014,GO:0023051,GO:0023052,GO:0030141,GO:0030234,GO:0030295,GO:0030296,GO:0030474,GO:0031023,GO:0031072,GO:0031089,GO:0031098,GO:0031252,GO:0031253,GO:0031256,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031347,GO:0031399,GO:0031401,GO:0031410,GO:0031435,GO:0031647,GO:0031974,GO:0031982,GO:0031983,GO:0032147,GO:0032268,GO:0032270,GO:0032587,GO:0032872,GO:0032940,GO:0032991,GO:0033036,GO:0033043,GO:0033554,GO:0033674,GO:0034613,GO:0034774,GO:0035556,GO:0035690,GO:0036211,GO:0038127,GO:0038128,GO:0042221,GO:0042325,GO:0042327,GO:0042493,GO:0042827,GO:0042886,GO:0042995,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043408,GO:0043412,GO:0043422,GO:0043549,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0045055,GO:0045088,GO:0045184,GO:0045859,GO:0045860,GO:0045937,GO:0046903,GO:0046907,GO:0048518,GO:0048522,GO:0048583,GO:0050730,GO:0050731,GO:0050776,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0050896,GO:0051082,GO:0051087,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051300,GO:0051338,GO:0051347,GO:0051403,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0051879,GO:0060205,GO:0060255,GO:0060330,GO:0060334,GO:0060338,GO:0060759,GO:0061077,GO:0061097,GO:0061098,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070302,GO:0070727,GO:0070887,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071900,GO:0071944,GO:0072686,GO:0080090,GO:0080134,GO:0080135,GO:0097110,GO:0097708,GO:0098590,GO:0098772,GO:0098779,GO:0098780,GO:0099503,GO:0101031,GO:0120025,GO:0120038,GO:0140096,GO:1901524,GO:1901526,GO:1901564,GO:1902531,GO:1903146,GO:1903599,GO:1904029,GO:1904923,GO:1904925,GO:1990565
Exons7
EggNOG free text desc.chaperone binding
EggNOG OGsKOG2260@1,KOG2260@2759
Ec32 ortholog descriptionCdc37, N-terminal domain
Ec32 orthologEc-23_003080.1
Cds size612
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536,ko03029,ko03110
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13694.2906.1prot_Ecto-sp13_S_contig13694.2906.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13694 118..4642 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462730.9290621-CDS-Ecto-sp13_S_contig13694:117..1681681462730.9290621-CDS-Ecto-sp13_S_contig13694:117..168Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13694 118..168 +
1681462730.9462988-CDS-Ecto-sp13_S_contig13694:521..6291681462730.9462988-CDS-Ecto-sp13_S_contig13694:521..629Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13694 522..629 +
1681462730.9564273-CDS-Ecto-sp13_S_contig13694:2070..22261681462730.9564273-CDS-Ecto-sp13_S_contig13694:2070..2226Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13694 2071..2226 +
1681462730.9658365-CDS-Ecto-sp13_S_contig13694:2894..29991681462730.9658365-CDS-Ecto-sp13_S_contig13694:2894..2999Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13694 2895..2999 +
1681462730.9759493-CDS-Ecto-sp13_S_contig13694:3386..34521681462730.9759493-CDS-Ecto-sp13_S_contig13694:3386..3452Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13694 3387..3452 +
1681462730.9865248-CDS-Ecto-sp13_S_contig13694:4255..43411681462730.9865248-CDS-Ecto-sp13_S_contig13694:4255..4341Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13694 4256..4341 +
1681462731.0020204-CDS-Ecto-sp13_S_contig13694:4602..46421681462731.0020204-CDS-Ecto-sp13_S_contig13694:4602..4642Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13694 4603..4642 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13694.2906.1

>prot_Ecto-sp13_S_contig13694.2906.1 ID=prot_Ecto-sp13_S_contig13694.2906.1|Name=mRNA_Ecto-sp13_S_contig13694.2906.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=204bp
LQRRQREEKEQEQNARKAELEKEIKAGLARVAELEQRAAAVKAEGGDVDG
EDPVALTVEAEELQKAVEAKKKEVESIERNKTWNWENMCHVTEERTIINK
SADSEAKDTTMRSALPPKLAAALGEKPRAVTAPGPETTTQEVQSYSDFVQ
EHEGVMEKYSELHSMEKTRDFLRQHGDILFADHCQSYLLLSCLEDEMNGK
HERM
back to top

mRNA from alignment at Ecto-sp13_S_contig13694:118..4642+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13694.2906.1 ID=mRNA_Ecto-sp13_S_contig13694.2906.1|Name=mRNA_Ecto-sp13_S_contig13694.2906.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4525bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13694:118..4642+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCAGCGTCGCCAAAGAGAGGAAAAGGAACAGGAGCAAAACGCCCGTAA
GGTTAGTCTAACTTCTTGTCGTCCACAGCTCCGATGCAATTACGTCTTGT
TTTTGAAGCCGATTTTGTCATTTATTTTTGTTCAGACCGATTCTTGTGGT
TGCTATTTTTCAAGGTTAGTGTGTGTATGGGGTGGGTGAAGTGCTGCTGC
TTAGAGCAGGCATACATTTACAGCATGTGCAGGCAGGAAGTTGAGAAGAT
CTCCCACAACCGAAGCCAGCGGTACAACGATTACATCCAAGCGGGTAATC
AGCCGCCGATGCAGCTCCCCTCCCCAAAAGCACACACTTCAAACATGGTC
CAGGTGGTCTCATGTCGTTTTGTTGTTTGTTGTTTGTTCTGTTGTGCTGT
GCAGGCCGAGCTTGAAAAAGAGATCAAGGCAGGGTTGGCGAGAGTGGCGG
AGCTGGAGCAGAGGGCTGCCGCCGTGAAAGCGGAGGGAGGGGACGTGGAC
GGAGAGGATCCGGTGAGCTGACGAAAAGTCTGACTTAAGCGGAGTTCACG
CCGTGGCCATCCGGATGGGCCAGGTGCCGCCAGGGGTCAGTCAAGGTCTA
ACGAGCACGCGTTGATCGCGTGTCATGCCAATGAAAGGTCGCATGGGTCA
GTGGTCGCCAGAGGTCAACAGTCTAACGAGCGCCTGACTGCGGTTCCTAC
AAGAAAGAATCACGTTCGAATGGACCAGTGATCACTAGGGGCCAAAGTCG
AATCACGTCGACGACAAATCATGTTCGAATGGGTCAGTGGTCGCCACAGG
TCAAACTCGGTGATCACGATGATTCAAGGTCTATCGGCAACACACCTGAC
TGCGTGTCACGCCAAGGAAAGTCATCGTCGAATGGGTCAGTGATCGCCAA
AGTCTAGCGAGCACCTCATTGCGATCTAACGAGCACCTGATTTCACGAAG
GACAACCCATGTCCGAATGGGTCAGTCGTCGCGCGGGGTCGAACTCTAAC
GAGCACCCGACTTCGTGTACGTGGAAACATTCAATCAGCGACCACAAGAG
GCGTGCCATTCTCATCGTTGCACAAACGACAAAATAAAGCATACGGTACG
TTGCAGGTGGTCCACCAGACCGGAGGTGGGAGATGTCGTCGGTCGTCGGC
GTGACCACGACCATTCCCGTGACAATCCTGTCCTCCGATCACGTCTGCCT
CCACTCCACCCTCAGCGCTGTTGCCTATTTTGTACAGCAGAGGCCCCTGT
TTAGTGCCTGTGCCCGGTGTGGTAGTACCGGTGTTTTCGCGGCGGACACA
CTCTCAATTTTCAAGGCATTCGGTACTTCGATGAATGATGAATGGTATGA
ATATGCATACGCCGGCGTCCGGTACGATAGTATCATGCCGGCCAACTATC
TGGGCACCTATTGTACCGGCACTGACCAAGGACCTCGACTGTAATCAAAT
CATGCGTTTCAAACCGGCACCGAACGTACCAGATATGTAGCATACATCAC
CCAAGCTGAAATCGTGCTCAAGGACTCCTACTGTAAGGTACGTTTTTTTT
GTGTGTTGCGCGAACTCTGAACGCAGTATTCGTTAAGAAACACACAATGG
GGGGGAGTCTGCCAAACGGAAAGGCGTACGCGTTTTTTAGAGAATATTCC
TTGAAGCCGCAGAAAGACTAGAGCTACCCGTTCGAGATATTAACGCATGC
GAAGGGGGTGTGTTTAAATTCAATGCAGTGGGTGGGATAACACCGGCTGG
GTACTGTTTTGTATCCCGCTGAACGTGGAATTCGACTATGTTCGATGCCG
AGATGTGATCCGTAAGAGTCATATCGGGCATGATTTGCAAAAAACACGCT
TCTCAAAGGCATTTTGAGGAACTGGTGCGGTACGACTGAGGTCTTTTCAT
AGCCGGTCAGCGCGGAATTTACTACTAACAAAGACACACACACGCATACA
CAGGTGGCTCTAACGGTGGAGGCCGAGGAGCTACAAAAGGCAGTGGAAGC
GAAGAAGAAGGAGGTGGAATCGATCGAGCGCAACAAGACCTGGAACTGGG
AGAACATGTGCCACGTCACCGAGGAGCGTACGATCATCAACAAGAGCGCC
GACAGCGAGGTGGGTGCGGCACATGTGCATGGGGACGCTTTTTTTTTTTT
GTCCGGCTTGTTTTTCTTACGCCCCCCCCCCTCACCCCTTGTAGCCAAGG
CTGGCGAAAACCGCTTCGTCCCGGCATTGTTGGGATGCGAGGTCAATGGT
CTGACGACGGCGGCGTGCGTTTGCGTGGATGCACCCCTTGTGGAGTCCAT
CAGCTGCATATTTGTGGTACGGTCGGTGTTGCGGGTTTCCGTATTAGCGG
CGATAGCGGTATCTACAGGCCGCTGGATTCTCGCGATTTCACGGTGCTGT
TGAGGCAGAGCGGTTTCGTAGTATTACGGTAGCATCTTGTCGAACCCGGA
AGACTTCTTGCAATGTGCCCGGCCGCCCTCTGGGAGCGAACCGCGACAAA
ACAAGAGGCCCCCCAGATACCATGGCGATCGGGATACTGCAGGTGACGTG
GGATTTCGTCCTTGTTGTTGGTGATGCTGATGCTGTTGAGGCTGTTTTGT
TTTGTCGCTGTCTTTGATGTCGCCGGTCCTCTTGACACTGAGAAACCCGC
GCCGACCTCGTGCTGGAAACAACTCGAGCACGTCTCTGTTAACGGCGTGG
CATCCATTGACCTGAACCGAAACCTGAAAAAAAATGACTCGGTACACAAC
ACGTGTCCGTTCAACACCAAACGGCAGGCAAAGGACACGACGATGCGATC
TGCGCTTCCCCCGAAGCTCGCTGCGGCTCTCGGAGAAAAGCCGAGGGCGG
TCACTGCCCCAGGCCCGGAAACCACAACTCAGGTGAGAGAGCGGGGGAGA
CGTGAAGTGATAACTGTACCCCCCCCCCCCTCACTCTGTCTGTGGCCTAC
CGAACGGGCCATTCTCGACCCCTTCCGCCGGCTTTCACACGGTGCTAATG
AACACTTATAGGTGATGTGGGATGGACATTACTTCAGCACCGAAGTCTTT
GCAGTGAACGGGAATGAAACCGGCTGGATATTGTGCTTAGTTTTTGTCCA
TTCGAGCCTGTGGGCTGAAGTTTTGTCTGGGCCGGGCTAGAGTAGGTCCC
GGGCTACGCCACGCCTGCTATCATTCGTCGTGACCCTTGATCGAGCTACC
CGACTACTTTGCATACGGCTCAAGGTCGTTTGCTCAGCGTTGTTTTTGTT
ATTTCGTGCCGGTAAACAGGAGGTGCAATCTTACTCGGACTTCGTGCAGG
AGCATGAGGGCGTCATGGAGAAGTACAGCGAGCTGGTGGGTGCCGAAACT
TACCAGTAGTGCTTGCGTGTGTGGGTTTTTGTTGTCAGCATCGACCGCGC
TGACCGGTTGATCAATGAAGAAATGCCAGTCTCAGTGCGGTTGAGCCCAC
GAAATTCTTCCAAAGGCAATGATCTTGGACCTGATGAAGGTCTATGTGTG
TGTGTGTGTTTTGTTGTTCGTCTTTGTATATCAGCGCTCGAAGCTGTGTC
TGTCTTGAGTTAACTTGTTGTTATCATGTGTATTTTTGGGACATTTTGGT
CGGCCTGTCTAGAGTACCGTGAAGTGCAGCAACAGGGACAAGTTGGTTGT
TCCTCTCTCATGACGTACGAACATAAGGTCATCGTCCCTTCTCCCACCCC
ATAACCGTGTTGCTGCCCCTTGGCGCACTCTTACCGTAGCAAAGCGTCGT
GTGCGCATTCTGCATGGTAGTTCGCGGAGAAAGATCAAGGATGTAGACAA
GAAGCCTCGAGAACCCAGAGACAACCAAAAACAACATTATCCACGCACCA
ACGCACTCGGGGCGACCAATGCATCAACATATTCTGTGCGACCGACAATA
CTACTCAATCGAAAGATCGTATCGCATAGGGCAAAATGCGCCAGTAGCCT
AGAGGTGGCCGCAGCATCGCACAAAACAAACTACACGGGAGGGCGTCGAC
CCCCTGTATCCTCATCCGTAGGCTCAATTTCTTGTCGAAGTGTGTTCGTT
CGGTGTACGTTACATAGTTTATCTACGCCCGTGGAGGTTTCTTACGGCTT
TGTGTTGAAATGTTTTTTTCCCTTTTTTTTTCGTGCAGCACTCGATGGAG
AAGACCAGGGATTTCCTGCGGCAGCACGGGGACATCCTGTTCGCCGACCA
CTGCCAGAGCTACCTCCTCCTATCGTGAGTCGCCAAGTTGTTTTGTCTTT
GCTGATTGCAGTCAGAGCTGCCCCCTCCTATCGTGAGAGGTGCAGTGAAA
CCAGATTCGATGTTCCCCCAACGATTTTCACGTGCGTTCCTTCCTTCTTT
TCGCGTGGTGGCGACAAGGATTTTTCTTCTGAGTTGCCTGGAAAGCTGCC
TGGACGACACACATGGAAATATTGGTTCCCCTCTCTACAACACGCAACCT
CTGCTCCTTCTTACCGATGTGCCGAAACGATGCAGCTGTCTGGAAGACGA
GATGAACGGCAAGCACGAGCGGATG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13694:118..4642+

>mRNA_Ecto-sp13_S_contig13694.2906.1 ID=mRNA_Ecto-sp13_S_contig13694.2906.1|Name=mRNA_Ecto-sp13_S_contig13694.2906.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=612bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13694:118..4642+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCAGCGTCGCCAAAGAGAGGAAAAGGAACAGGAGCAAAACGCCCGTAA
GGCCGAGCTTGAAAAAGAGATCAAGGCAGGGTTGGCGAGAGTGGCGGAGC
TGGAGCAGAGGGCTGCCGCCGTGAAAGCGGAGGGAGGGGACGTGGACGGA
GAGGATCCGGTGGCTCTAACGGTGGAGGCCGAGGAGCTACAAAAGGCAGT
GGAAGCGAAGAAGAAGGAGGTGGAATCGATCGAGCGCAACAAGACCTGGA
ACTGGGAGAACATGTGCCACGTCACCGAGGAGCGTACGATCATCAACAAG
AGCGCCGACAGCGAGGCAAAGGACACGACGATGCGATCTGCGCTTCCCCC
GAAGCTCGCTGCGGCTCTCGGAGAAAAGCCGAGGGCGGTCACTGCCCCAG
GCCCGGAAACCACAACTCAGGAGGTGCAATCTTACTCGGACTTCGTGCAG
GAGCATGAGGGCGTCATGGAGAAGTACAGCGAGCTGCACTCGATGGAGAA
GACCAGGGATTTCCTGCGGCAGCACGGGGACATCCTGTTCGCCGACCACT
GCCAGAGCTACCTCCTCCTATCCTGTCTGGAAGACGAGATGAACGGCAAG
CACGAGCGGATG
back to top