prot_Ecto-sp13_S_contig13691.2905.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig13691.2905.1
Unique Nameprot_Ecto-sp13_S_contig13691.2905.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length288
Homology
BLAST of mRNA_Ecto-sp13_S_contig13691.2905.1 vs. uniprot
Match: A0A6H5JZG6_9PHAE (HRDC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZG6_9PHAE)

HSP 1 Score: 531 bits (1369), Expect = 1.860e-185
Identity = 271/288 (94.10%), Postives = 277/288 (96.18%), Query Frame = 0
Query:    1 MGTKRGTDRVYNAAMKPSFGKGKERGKTETFWKALFHQLVERQGFLEAVSFSSDNGGRSGTTYRLTRQGRSFLQATKEKLPMSFTPSDELATEGRRFRTAAARPADGYPQANAARHGLSEEEQKVHALLLNLRKEIADRTGEMPYNVMGGAVVRELSKRRPVDLATLTSVGGMGETKINKYGAEIIEVLKAACADLKLESNVAAAPAQEAPWLTTSREDRPLTSVQQLAHEAYTRQASLTLEQVAARMPRAVAIGTFTGHLAACLEAGLTFAWDRRRLGIDLGLERKV 288
            MGTKRGTDRVYNA MKPSFG+GKERGKTETFWKALFHQLVERQGFLEAVSFSS+NGGRSGTTYRLTR+GRSFLQ TKEKLPMSFTPSDELATEGRRFRTAAARPADGYPQ NAARHGLSEEEQKVHALLLNLRK+IADRTGEMPYNVMGGAVVRELSKRRPVDLATLTSVGGMGETKINKYGAEIIEVLKAACADLKLESNVAAAP QEAPWLTTSRED PLTSVQQLAHEAY RQ SLTLEQVAARMPR VAIGTF GHLAACL+AGLTFAWDRRRLGIDL LE K+
Sbjct:    1 MGTKRGTDRVYNATMKPSFGRGKERGKTETFWKALFHQLVERQGFLEAVSFSSENGGRSGTTYRLTRKGRSFLQVTKEKLPMSFTPSDELATEGRRFRTAAARPADGYPQTNAARHGLSEEEQKVHALLLNLRKKIADRTGEMPYNVMGGAVVRELSKRRPVDLATLTSVGGMGETKINKYGAEIIEVLKAACADLKLESNVAAAPVQEAPWLTTSREDEPLTSVQQLAHEAYMRQDSLTLEQVAARMPRPVAIGTFAGHLAACLQAGLTFAWDRRRLGIDLDLELKI 288          
BLAST of mRNA_Ecto-sp13_S_contig13691.2905.1 vs. uniprot
Match: D7G9E9_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9E9_ECTSI)

HSP 1 Score: 361 bits (927), Expect = 4.710e-119
Identity = 182/187 (97.33%), Postives = 185/187 (98.93%), Query Frame = 0
Query:    1 MGTKRGTDRVYNAAMKPSFGKGKERGKTETFWKALFHQLVERQGFLEAVSFSSDNGGRSGTTYRLTRQGRSFLQATKEKLPMSFTPSDELATEGRRFRTAAARPADGYPQANAARHGLSEEEQKVHALLLNLRKEIADRTGEMPYNVMGGAVVRELSKRRPVDLATLTSVGGMGETKINKYGAEIIE 187
            MGTKRGTDRV+NAAMKPSFGKGKERGKTETFWKALFHQLVERQGFLEAVSFSSDNGGRSGTTYRLTRQGRSFLQATKEKLPMSFTPSDELATEGRRFRTAAARPADGYPQ NAAR+GLSEEEQKVHALLLNLRKEIADRTGEMPYNVMGGAVV+ELSKRRPVDL TLTSVGGMGETKINKYGAEIIE
Sbjct:  373 MGTKRGTDRVHNAAMKPSFGKGKERGKTETFWKALFHQLVERQGFLEAVSFSSDNGGRSGTTYRLTRQGRSFLQATKEKLPMSFTPSDELATEGRRFRTAAARPADGYPQTNAARNGLSEEEQKVHALLLNLRKEIADRTGEMPYNVMGGAVVKELSKRRPVDLTTLTSVGGMGETKINKYGAEIIE 559          
BLAST of mRNA_Ecto-sp13_S_contig13691.2905.1 vs. uniprot
Match: D7G9F0_ECTSI (HTH_40 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9F0_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 1.440e-51
Identity = 95/101 (94.06%), Postives = 96/101 (95.05%), Query Frame = 0
Query:  188 VLKAACADLKLESNVAAAPAQEAPWLTTSREDRPLTSVQQLAHEAYTRQASLTLEQVAARMPRAVAIGTFTGHLAACLEAGLTFAWDRRRLGIDLGLERKV 288
            VLKAACADLKLESNVAAAPAQEAPWLTTSREDRPLTSVQQLAHEAY RQ SLTLEQVAARMPR VAIGTF GHLAACLEAGLTFAWDRRRLGIDL LERK+
Sbjct:    2 VLKAACADLKLESNVAAAPAQEAPWLTTSREDRPLTSVQQLAHEAYMRQDSLTLEQVAARMPRPVAIGTFAGHLAACLEAGLTFAWDRRRLGIDLDLERKI 102          
BLAST of mRNA_Ecto-sp13_S_contig13691.2905.1 vs. uniprot
Match: W0E7T7_9FIRM (DNA helicase n=1 Tax=Desulfitobacterium metallireducens DSM 15288 TaxID=871968 RepID=W0E7T7_9FIRM)

HSP 1 Score: 69.3 bits (168), Expect = 1.510e-9
Identity = 48/162 (29.63%), Postives = 77/162 (47.53%), Query Frame = 0
Query:  123 QKVHALLLNLRKEIADRTGEMPYNVMGGAVVRELSKRRPVDLATLTSVGGMGETKINKYGAEIIEVLKAACADLKLESNVAAAPAQEAPWLTTSREDRPLTSVQQLAHEA-----YTRQASL-----TLEQVAARMPRAVAIGTFTGHLAACLEAGLTFAWD 274
            Q +   L  LR  +A R    PY V   + +RE+++  P+DLA    +GG+GE K+ KYGAE IE + A   + +  +        +    T S ++R   +++ + H +     Y +   L     TLE++A  + R + I T   HL  C E G T  W+
Sbjct:  519 QSLFERLRLLRHNLASRENLPPYMVFSDSTLREMAENLPIDLAGFIRIGGVGEKKLEKYGAEFIEEISAYLLEKQAMAGDQVQELHDVVQQTNSNQERISHNLEPVTHPSVKIPSYIQTLELLQQGKTLEEIA--VLRKLTISTVQDHLIRCHEEGHTIPWE 678          
BLAST of mRNA_Ecto-sp13_S_contig13691.2905.1 vs. uniprot
Match: A0A6G9ICH7_9GAMM (DNA helicase n=1 Tax=Zophobihabitans entericus TaxID=1635327 RepID=A0A6G9ICH7_9GAMM)

HSP 1 Score: 68.9 bits (167), Expect = 1.890e-9
Identity = 55/176 (31.25%), Postives = 85/176 (48.30%), Query Frame = 0
Query:   19 FGKGKERGKTETFWKALFHQLVERQGFL--EAVSFSSDNGGRSGTTYRLTRQGRSFLQATKE---KLPMSFTPSDELATEGRRFRTAAARPADGYPQANAARHGLSEEEQKVHALLLNLRKEIADRTGEMPYNVMGGAVVRELSKRRPVDLATLTSVGGMGETKINKYGAEIIEVL 189
            +G GKE  KT  FW ++  QLV   GFL  +  ++S+          +LT   R  L+   E    +P       E    GR               ++AA   L+++E+ + A L  LRK +AD +G  PY V   A + E+ +  P + + L S+ G+G++K+ KYGAE IEV+
Sbjct:  450 YGIGKE--KTSDFWISIIRQLVHL-GFLVQDITAYSA---------LKLTEAARPVLKGDVELSLAVPRLEIVKKEKVRNGR---------------SSAATSLLTDQEKVLFANLRRLRKSLADESGVPPYVVFSDATLFEMVQYLPTNPSALLSISGVGQSKLEKYGAEFIEVI 598          
BLAST of mRNA_Ecto-sp13_S_contig13691.2905.1 vs. uniprot
Match: A0A2N6ET78_9DELT (DNA helicase n=1 Tax=Desulfuromonas sp. TaxID=892 RepID=A0A2N6ET78_9DELT)

HSP 1 Score: 65.9 bits (159), Expect = 1.980e-8
Identity = 56/169 (33.14%), Postives = 78/169 (46.15%), Query Frame = 0
Query:   25 RGKTETFWKALFHQLVERQGFLEA--VSFSSDNGGRSGTTYRLTRQGRSFLQATKEKLPMSFTPSDELATEGRRFRTAAARPADGYPQANAARHGLSEEEQKVHALLLNLRKEIADRTGEMPYNVMGGAVVRELSKRRPVDLATLTSVGGMGETKINKYGAEIIEVLKA 191
            RG+++  W  L  QLV   G+LE    +FS           RLT   R  L+   E L +S  P  +    G+R R                  GL  +E+ +  LL   RK IADR G  P+ V G A + E++   P D  T+  + G+GE K+ KYGAE IE ++A
Sbjct:  454 RGQSQDQWSHLLRQLVHL-GYLEQDIANFS---------VLRLTESARPLLRGEAE-LTLS-RPRLKPVAAGKRTRKQIV--------------GLDYDEE-LFGLLRGRRKRIADRAGVPPFVVFGDASLAEMAAILPTDAKTMLEINGVGEHKLEKYGAEFIEEIQA 595          
BLAST of mRNA_Ecto-sp13_S_contig13691.2905.1 vs. uniprot
Match: C0GGZ5_9FIRM (DNA helicase n=1 Tax=Dethiobacter alkaliphilus AHT 1 TaxID=555088 RepID=C0GGZ5_9FIRM)

HSP 1 Score: 65.1 bits (157), Expect = 3.550e-8
Identity = 31/69 (44.93%), Postives = 43/69 (62.32%), Query Frame = 0
Query:  121 EEQKVHALLLNLRKEIADRTGEMPYNVMGGAVVRELSKRRPVDLATLTSVGGMGETKINKYGAEIIEVL 189
            ++  + A L  LRKEIADR    PY V   A +RE+S+RRP D  +L  + G+GE K+ KYGA  I+ +
Sbjct:  516 KDDNLFAQLRRLRKEIADRENIPPYVVFSDATLREMSERRPADSQSLLRINGVGEKKLEKYGAHFIDAI 584          
BLAST of mRNA_Ecto-sp13_S_contig13691.2905.1 vs. uniprot
Match: A0A6H9HHM7_9PROT (DNA helicase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A6H9HHM7_9PROT)

HSP 1 Score: 65.1 bits (157), Expect = 3.590e-8
Identity = 51/174 (29.31%), Postives = 81/174 (46.55%), Query Frame = 0
Query:   18 SFGKGKERGKTETFWKALFHQLVERQGFLEAVSFSSDNGGRSGTTYRLTRQGRSFLQATKEKLPMSFTPSDELATEGRRFRTAAARPADGYPQANAARHGLSEEEQKVHALLLNLRKEIADRTGEMPYNVMGGAVVRELSKRRPVDLATLTSVGGMGETKINKYGAEIIEVLKA 191
            ++G GK+ G+ E  W ++  QL+ R   ++ ++  S          RLT   R  L+   +          ELA   RR +   A  A G          LS  +  +   L +LR+E+A + G  PY V G   + E+S+ RP D   L  + G+G+ K+ +YGA  +EVL+A
Sbjct:  455 TWGIGKDLGEAE--WMSILRQLIHRGYLVQDIANYS--------VLRLTEAARPLLRGEMQL---------ELARPPRREKATKAGSATGRSAL-----ALSAADLPLFEALRSLRRELAAQQGVPPYVVFGDVTLVEMSQARPRDEDELLCITGVGQVKLERYGAAFLEVLRA 604          
BLAST of mRNA_Ecto-sp13_S_contig13691.2905.1 vs. uniprot
Match: A0A177ZJ38_9BACI (DNA helicase n=2 Tax=Lederbergia galactosidilytica TaxID=217031 RepID=A0A177ZJ38_9BACI)

HSP 1 Score: 64.3 bits (155), Expect = 6.860e-8
Identity = 45/156 (28.85%), Postives = 75/156 (48.08%), Query Frame = 0
Query:  121 EEQKVHALLLNLRKEIADRTGEMPYNVMGGAVVRELSKRRPVDLATLTSVGGMGETKINKYGAEIIEVLKAACADLKLESNVAAAPAQEAPWLT-TSREDRPLTSVQQLAHEAYTRQASLTLEQVAARMPRAVAIGTFTGHLAACLEAGLTFAWDR 275
            E+  +   L  +RKEIA+     PY +     ++E+S   P++ A L  V G+G+ K+  YGA  +EV++  C +  +E    +AP  E       SRE    T+ Q L       QA   + ++A    R ++  T  GH+  C + G+  +WD+
Sbjct:  515 EDNALFERLRQVRKEIAEGEKVPPYIIFSDVTLKEMSGMLPLNNAELLQVKGVGDRKLEAYGAPFLEVIQQYCEEKGMERKSFSAPLLEKKVTAQVSREASHQTTYQML-------QAGKEIAEIATE--RGLSERTVEGHIIKCDQEGMAVSWDQ 661          
BLAST of mRNA_Ecto-sp13_S_contig13691.2905.1 vs. uniprot
Match: UPI00166539D6 (DNA helicase RecQ n=1 Tax=Halopseudomonas pertucinogena TaxID=86175 RepID=UPI00166539D6)

HSP 1 Score: 63.9 bits (154), Expect = 9.190e-8
Identity = 66/251 (26.29%), Postives = 109/251 (43.43%), Query Frame = 0
Query:   18 SFGKGKERGKTETFWKALFHQLVERQGFLEAVSFSSDNGGRSGTTYRLTRQGRSFLQATKEKLPMSFTPSDELATEGRRFRTAAARPADGYPQANAARHGLSEEEQKVHALLLNLRKEIADRTGEMPYNVMGGAVVRELSKRRPVDLATLTSVGGMGETKINKYGAEIIEVLKAACADLKLESNVAAAPAQEAPWLTTSREDRPLTSVQQLAHEAYTRQASLTLEQVAARMPRAVAIGTFTGHLAACLEAG 268
            ++G GK+   TE  W+++F QL+ R+     V    D  G    + RL    R  L+             + LA      R   AR A   P     +  ++E ++++   L  LRK +AD  G  PY V   + + ++ ++RP  +  +  V G+G  K+ +YGA+ ++VL     D        AAPA EA  +          ++  +  E   RQA L + QV  ++ +A++ G    H A  L  G
Sbjct:  450 TYGIGKQ--LTEQEWRSVFRQLIARR----LVEIDLDGFG----SLRLAESCRPLLRG-----------EESLA-----LRKDIARSAT-LPTRKGDKPVIAEADRELWEQLRALRKRLADAQGVPPYVVFADSTLVDMLRQRPTTMQDMGLVSGIGAHKLERYGADFLQVLLGDAGDS------GAAPAHEAQEIQA-------LALSGMEPEQIARQAGLPIRQVYQKLAQAISAGHIELHHAVDLPPG 660          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13691.2905.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZG6_9PHAE1.860e-18594.10HRDC domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G9E9_ECTSI4.710e-11997.33ATP-dependent DNA helicase n=1 Tax=Ectocarpus sili... [more]
D7G9F0_ECTSI1.440e-5194.06HTH_40 domain-containing protein n=1 Tax=Ectocarpu... [more]
W0E7T7_9FIRM1.510e-929.63DNA helicase n=1 Tax=Desulfitobacterium metallired... [more]
A0A6G9ICH7_9GAMM1.890e-931.25DNA helicase n=1 Tax=Zophobihabitans entericus Tax... [more]
A0A2N6ET78_9DELT1.980e-833.14DNA helicase n=1 Tax=Desulfuromonas sp. TaxID=892 ... [more]
C0GGZ5_9FIRM3.550e-844.93DNA helicase n=1 Tax=Dethiobacter alkaliphilus AHT... [more]
A0A6H9HHM7_9PROT3.590e-829.31DNA helicase n=1 Tax=Proteobacteria bacterium TaxI... [more]
A0A177ZJ38_9BACI6.860e-828.85DNA helicase n=2 Tax=Lederbergia galactosidilytica... [more]
UPI00166539D69.190e-826.29DNA helicase RecQ n=1 Tax=Halopseudomonas pertucin... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002121HRDC domainSMARTSM00341hrdc7coord: 119..199
e-value: 6.6E-9
score: 45.6
IPR002121HRDC domainPFAMPF00570HRDCcoord: 127..189
e-value: 1.6E-14
score: 53.6
IPR002121HRDC domainPROSITEPS50967HRDCcoord: 119..199
score: 18.551
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 3..98
e-value: 2.3E-9
score: 38.7
NoneNo IPR availableGENE3D1.10.150.80coord: 118..201
e-value: 4.6E-16
score: 60.3
IPR010997HRDC-like superfamilySUPERFAMILY47819HRDC-likecoord: 117..195

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13691contigEcto-sp13_S_contig13691:4..4541 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13691.2905.1mRNA_Ecto-sp13_S_contig13691.2905.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig13691 4..4562 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig13691.2905.1 ID=prot_Ecto-sp13_S_contig13691.2905.1|Name=mRNA_Ecto-sp13_S_contig13691.2905.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=288bp
MGTKRGTDRVYNAAMKPSFGKGKERGKTETFWKALFHQLVERQGFLEAVS
FSSDNGGRSGTTYRLTRQGRSFLQATKEKLPMSFTPSDELATEGRRFRTA
AARPADGYPQANAARHGLSEEEQKVHALLLNLRKEIADRTGEMPYNVMGG
AVVRELSKRRPVDLATLTSVGGMGETKINKYGAEIIEVLKAACADLKLES
NVAAAPAQEAPWLTTSREDRPLTSVQQLAHEAYTRQASLTLEQVAARMPR
AVAIGTFTGHLAACLEAGLTFAWDRRRLGIDLGLERKV
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002121HRDC_dom
IPR036388WH-like_DNA-bd_sf
IPR010997HRDC-like_sf