mRNA_Ecto-sp13_S_contig13673.2896.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13673.2896.1
Unique NamemRNA_Ecto-sp13_S_contig13673.2896.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13673.2896.1 vs. uniprot
Match: D7FI53_ECTSI (SMK-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI53_ECTSI)

HSP 1 Score: 377 bits (967), Expect = 4.580e-126
Identity = 182/183 (99.45%), Postives = 183/183 (100.00%), Query Frame = 1 
Query:    4 YQENVGCLEIWDQICDVQGRFGNEYGRPRGGGEVAVPLPDPKMDTLGASGEYVGKLLKVFNDCEDLDDEESLRVLCHIFKAIVGLNDGTLLEVLLADNLFVDMAGVFEYDLELKEKGDHRKFLTQTASFKQVLPIPDEEVVQKIHQNFRITFLKDALLRPMMDDAVVGTLNSLTYFNNTEIVQ 552
            +QENVGCLEIWDQICDVQGRFGNEYGRPRGGGEVAVPLPDPKMDTLGASGEYVGKLLKVFNDCEDLDDEESLRVLCHIFKAIVGLNDGTLLEVLLADNLFVDMAGVFEYDLELKEKGDHRKFLTQTASFKQVLPIPDEEVVQKIHQNFRITFLKDALLRPMMDDAVVGTLNSLTYFNNTEIVQ
Sbjct:  101 FQENVGCLEIWDQICDVQGRFGNEYGRPRGGGEVAVPLPDPKMDTLGASGEYVGKLLKVFNDCEDLDDEESLRVLCHIFKAIVGLNDGTLLEVLLADNLFVDMAGVFEYDLELKEKGDHRKFLTQTASFKQVLPIPDEEVVQKIHQNFRITFLKDALLRPMMDDAVVGTLNSLTYFNNTEIVQ 283
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13673.2896.1 vs. uniprot
Match: A0A6H5KKJ6_9PHAE (SMK-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ6_9PHAE)

HSP 1 Score: 363 bits (933), Expect = 8.350e-117
Identity = 182/207 (87.92%), Postives = 184/207 (88.89%), Query Frame = 1 
Query:    4 YQENVGCLEIWDQICDVQGRFGNEYGRPRGGGEVAVPLPDPKMDTLGA-----------------------SGEYVGKLLKVFNDCEDLDDEESLRVLCHIFKAIVGLNDGTLLEVLLADNLFVDMAGVFEYDLELKEKGDHRKFLTQTASFKQVLPIPDEEVVQKIHQNFRITFLKDALLRPMMDDAVVGTLNSLTYFNNTEIVQR 555
            +QENVGCLEIWDQICDVQGRFGNEYGRPRGGGEVAVPLPDPKMDTLGA                       SGEYVGKLLKVFNDCEDLDDEESLRVLCHIFKAIVGLNDGTLLEVLLADNLFVDMAGVFEYDLELKEKG+HRKFLTQTASFKQVLPIPDEEVVQKIHQNFRITFLKDALLRPMMDDAVVGTLNSLTYFNNTEIVQR
Sbjct:  188 FQENVGCLEIWDQICDVQGRFGNEYGRPRGGGEVAVPLPDPKMDTLGAILELLRGAGPAAKESYAGSLSEKSGEYVGKLLKVFNDCEDLDDEESLRVLCHIFKAIVGLNDGTLLEVLLADNLFVDMAGVFEYDLELKEKGNHRKFLTQTASFKQVLPIPDEEVVQKIHQNFRITFLKDALLRPMMDDAVVGTLNSLTYFNNTEIVQR 394
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BLAST of mRNA_Ecto-sp13_S_contig13673.2896.1 vs. uniprot
Match: A0A7S3YI92_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YI92_HETAK)

HSP 1 Score: 218 bits (555), Expect = 1.800e-66
Identity = 117/207 (56.52%), Postives = 144/207 (69.57%), Query Frame = 1 
Query:    4 YQENVGCLEIWDQICDVQGRFGNEYGRPRGGGEVAVPLPDPKMDTL--------GAS----------------GEYVGKLLKVFNDCEDLDDEESLRVLCHIFKAIVGLNDGTLLEVLLADNLFVDMAGVFEYDLELKEKGDHRKFLTQTASFKQVLPIPDEEVVQKIHQNFRITFLKDALLRPMMDDAVVGTLNSLTYFNNTEIVQ 552
            +QEN GCLEIW+++CDVQG++ +E+ RP    E    LP+ KMD+L        GAS                GEY+ KLL++F+DCEDLDD E+L VL +IFKAI  LND TLLEV+L+D  FV +AGVFEYD ELK KGDHR FL +   FKQVLPI D E+  KI QNFRI+FL+D LLRPMMDDA   TL+SL +FNN+EI+Q
Sbjct:   89 FQENAGCLEIWNKVCDVQGKY-SEF-RPD---ESKYSLPECKMDSLSEIGEALAGASQQQQKEVYVNLLLAKDGEYLNKLLQIFDDCEDLDDLENLHVLVNIFKAIFSLNDPTLLEVILSDQFFVRVAGVFEYDPELKHKGDHRTFLQEKVQFKQVLPIEDPELGAKIRQNFRISFLRDVLLRPMMDDAYASTLSSLAFFNNSEILQ 290
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BLAST of mRNA_Ecto-sp13_S_contig13673.2896.1 vs. uniprot
Match: A0A2P6NKH5_9EUKA (SMK-1 domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NKH5_9EUKA)

HSP 1 Score: 141 bits (356), Expect = 1.270e-35
Identity = 76/202 (37.62%), Postives = 104/202 (51.49%), Query Frame = 1 
Query:    4 YQENVGCLEIWDQICDVQGRFGNEYGRPRGGGEVAVPLPD----PKMDTLGASGE----------------YVGKLLKVFNDCEDLDDEESLRVLCHIFKAIVGLNDGTLLEVLLADNLFVDMAGVFEYDLELKEKGDHRKFLTQTASFKQVLPIPDEEVVQKIHQNFRITFLKDALLRPMMDDAVVGTLNSLTYFNNTEIV 549
            +QE+ GC E+WDQIC VQ        R        +P P      K+D + A                   Y+GKL++VF   EDL+D++SL  L +IFK IV LND  L E L +D     + G  EYD EL  +  HR ++     FKQ+ P    EV+  IHQ+FR+ ++KD +L   +DD   GT+NSL +  N EIV
Sbjct:   87 FQESTGCKEVWDQICSVQKTDSEANNRKTRDNRAELPQPSLENLDKLDKILAHANSTLKREQLVNSILKENYLGKLIQVFETAEDLEDKDSLHQLFNIFKNIVLLNDTALFEALFSDQYIFGVLGALEYDPELSVRVKHRHYIKNQVVFKQIAPFRSPEVLNNIHQSFRLQYVKDVVLPRALDDPTFGTINSLIFIKNVEIV 288
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BLAST of mRNA_Ecto-sp13_S_contig13673.2896.1 vs. uniprot
Match: A9SAB8_PHYPA (Predicted protein (Fragment) n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SAB8_PHYPA)

HSP 1 Score: 138 bits (348), Expect = 1.260e-34
Identity = 72/210 (34.29%), Postives = 109/210 (51.90%), Query Frame = 1 
Query:    4 YQENVGCLEIWDQICDVQGRF------GNEYGRPRGGGEVAVPLPDPKMDTLGASGEYVG----------------------KLLKVFNDCEDLDDEESLRVLCHIFKAIVGLNDGTLLEVLLADNLFVDMAGVFEYDLELKEKGDHRKFLTQTASFKQVLPIPDEEVVQKIHQNFRITFLKDALLRPMMDDAVVGTLNSLTYFNNTEIV 549
            +QE +GC  IWDQIC VQ         G E     GGG  A  LP  ++ TL    + VG                      KL+++F  CEDL++ E L ++  I K I+ LNDG + +++ +D+      G  EYD +L  + +HR +L +   FK+ +PI D  ++ KIHQ +RI ++KD +L  ++DD    T+NS+  FNN  +V
Sbjct:   80 FQETMGCTFIWDQICSVQRSIHFPSVAGMEITFCAGGGTDASELPSVELSTLPQIAKVVGEVLPFDKDRVASMVVHDKNYIRKLVEIFRTCEDLENVEGLHLMFKIVKGIISLNDGHIFDIIFSDDYIXXXVGALEYDPDLISRQNHRAYLKEQVVFKEAVPIYDPTILSKIHQTYRIGYIKDVILPRVLDDQTFATMNSIMLFNNVSVV 289
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BLAST of mRNA_Ecto-sp13_S_contig13673.2896.1 vs. uniprot
Match: A4S7R9_OSTLU (SMK-1 domain-containing protein (Fragment) n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S7R9_OSTLU)

HSP 1 Score: 134 bits (338), Expect = 2.380e-33
Identity = 76/213 (35.68%), Postives = 113/213 (53.05%), Query Frame = 1 
Query:    4 YQENVGCLEIWDQICDVQGRFGNEYGRPRGGG--------EVAVPLPDPKMDTLGA----------------------SGEYVGKLLKVFNDCEDLDDEESLRVLCHIFKAIVGLNDGTLLEVLLADNLFVDMAGVFEYDLELKEKGDHRKFLTQTASFKQVLPIPDEEVVQKIHQNFRITFLKDALLRPMMDDAVVGTLNSLTYFNNTEIVQ 552
            +QE +GC  IW+QI  VQ      Y +  GGG        +V + LP+P+   L                        S EY+ +L ++F  CED+DD E+L +   IF+A+V LND +L E LL++    D  G  EYD +  E+  HR+FL +  +FK+V+PI +  + +KIHQ  R+ +LKD +L   +DD+   TL S+   NN E+VQ
Sbjct:   83 FQEGMGCNFIWEQIKSVQ----RAYMQQTGGGVRYIGLQRDVQIELPEPETKNLEQLYNLISGSSLFARERIPMQILKSKEYLPRLFELFRQCEDVDDIENLHLFYAIFRAMVMLNDPSLYETLLSEEFVFDFVGALEYDPDQIERVHHRQFLKKNVAFKEVVPITNTMIREKIHQTCRLGYLKDVILPRALDDSAFSTLTSMMMCNNVEVVQ 291
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BLAST of mRNA_Ecto-sp13_S_contig13673.2896.1 vs. uniprot
Match: L8H1Z6_ACACA (SMK-1 domain-containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H1Z6_ACACA)

HSP 1 Score: 135 bits (339), Expect = 2.520e-33
Identity = 73/209 (34.93%), Postives = 112/209 (53.59%), Query Frame = 1 
Query:    4 YQENVGCLEIWDQICDVQGRFGNEYGRPRGGGEV-----AVPLPDPKMDTLG----------------------ASGEYVGKLLKVFNDCEDLDDEESLRVLCHIFKAIVGLNDGTLLEVLLADNLFVDMAGVFEYDLELKEKGDHRKFLTQTASFKQVLPIPDEEVVQKIHQNFRITFLKDALLRPMMDDAVVGTLNSLTYFNNTEIV 549
            +QE  GC E+W+QIC VQGR  +E        E       + LP   +  L                       A+  Y+ KL+++F   E+  ++  L ++ +IFK +V LND  L+E +  D  ++   G  EYD E+  K +HRK+L  +  FK+V+PI + ++++KIHQ FRI +LKD +L  ++DD    T+NS+ YFNN EIV
Sbjct:   94 FQEEQGCKEVWEQICAVQGRNPSESSEEVVTEEEESYFSGIKLPPANLSNLQKMNGVFDGEHNSHMKERLANSVATQGYLTKLIELFKVVEESGNQAQLHLMFNIFKNLVLLNDPNLMETMFNDQNYMTTVGALEYDPEVSPKLEHRKYLQNSVVFKEVVPIRNADILKKIHQTFRIQYLKDVILPRLLDDMTFATINSIIYFNNVEIV 302
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13673.2896.1 vs. uniprot
Match: A0A8C7USK6_ONCMY (SMK-1 domain-containing protein n=1 Tax=Oncorhynchus mykiss TaxID=8022 RepID=A0A8C7USK6_ONCMY)

HSP 1 Score: 133 bits (334), Expect = 2.620e-33
Identity = 73/201 (36.32%), Postives = 110/201 (54.73%), Query Frame = 1 
Query:    4 YQENVGCLEIWDQICDVQGR----------FGNEYGRPR-------GGGEVAVPLPDPKMDTLGASGEYVGKLLKVFNDCEDLDDEESLRVLCHIFKAIVGLNDGTLLEVLLADNLFVDMAGVFEYDLELKEKGDHRKFLTQTASFKQVLPIPDEEVVQKIHQNFRITFLKDALLRP--MMDDAVVGTLNSLTYFNNTEIV 549
            +QE  GC EIW++IC VQG+                 PR           ++ P+   K+     S  Y+ KLL++F  CEDLD+ E L  L  I + ++ LN   L EV+ +D+  +D+ G  EYD  L +   HR+FLT+TA FK+V+PI D E+ QKIHQ +R+ +++D +L    + ++  + TL S  +FN  EIV
Sbjct:   84 FQEKAGCDEIWEKICQVQGKDPALEITQDPIDESEEEPRLEEIADLVTSVLSSPIRREKLALALMSEGYMKKLLQLFQVCEDLDNREGLHHLYEIVRGVLFLNKAALFEVMFSDDCIMDVVGCLEYDPALVQPKRHREFLTKTAKFKEVIPITDSELRQKIHQTYRVQYIQDIILPTPSVFEENFLSTLTSFIFFNKVEIV 284
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13673.2896.1 vs. uniprot
Match: A0A1Y1YYL8_9FUNG (DUF625-domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YYL8_9FUNG)

HSP 1 Score: 134 bits (338), Expect = 3.360e-33
Identity = 70/212 (33.02%), Postives = 110/212 (51.89%), Query Frame = 1 
Query:    4 YQENVGCLEIWDQICDVQGRFGNEYGRPRGG------GEVAVPLPDPKMDTLGA-----------------------SGEYVGKLLKVFNDCEDLDDEESLRVLCHIFKAIVGLNDGTLLEVLLADNLFVDMAGVFEYDLELKE-KGDHRKFLTQTASFKQVLPIPDEEVVQKIHQNFRITFLKDALLRPMMDDAVVGTLNSLTYFNNTEIV 549
            +QE  GC E+WD I D+Q R  +    P          + ++ LP P++  L                           +Y+ KLL +   CEDLDD + L +LC+I K ++ LN+  + E ++ D++ + + G+ EYD +    K  HR++L   + FKQ++PI D  V  KIHQ FR+ +LKD +L  ++DD     LNSL +FN+ +IV
Sbjct:   86 FQEAEGCAEVWDMIMDMQKRLPDPPIDPNSSEFFQDSADSSITLPPPELSNLPEIEAIVKQVGRFVYGRDNLVSYVIQEKYIDKLLPLLEICEDLDDIKDLHILCNIMKGLILLNENAIFEYIVQDDVILGVVGMLEYDPDYPNAKAQHREYLANNSKFKQIVPIKDPTVESKIHQTFRLQYLKDVVLARILDDNTFSILNSLIFFNHVDIV 297
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13673.2896.1 vs. uniprot
Match: A0A8C5B1B1_GADMO (Protein phosphatase 4, regulatory subunit 3B n=2 Tax=Acanthomorphata TaxID=123368 RepID=A0A8C5B1B1_GADMO)

HSP 1 Score: 133 bits (334), Expect = 3.520e-33
Identity = 72/197 (36.55%), Postives = 108/197 (54.82%), Query Frame = 1 
Query:    4 YQENVGCLEIWDQICDVQGR-------------FGNEYGRPRGGGEVAVPLPDPKMDTLGASGEYVGKLLKVFNDCEDLDDEESLRVLCHIFKAIVGLNDGTLLEVLLADNLFVDMAGVFEYDLELKEKGDHRKFLTQTASFKQVLPIPDEEVVQKIHQNFRITFLKDALLRP--MMDDAVVGTLNSLTYFNNTEIV 549
            +QE  GC EIW++IC VQG+                E         ++ P+   K+     S  Y+ KLL +F  CEDLD+ E L  L  I + ++ LN   L EV+ +D+  +D+ G  EYD  L +   HR+FLT+TA FK+V+PI D E+ QKIHQ +R+ +++D +L    + ++  + TL S  +FN  EIV
Sbjct:   84 FQEKAGCDEIWEKICQVQGKDPALEITQDPIDESEEEQMADLVTSVLSSPIRREKLALALMSEGYIKKLLGLFQVCEDLDNREGLHHLYEIVRGVLFLNKAALFEVMFSDDCIMDVVGCLEYDPALVQPKRHREFLTKTAKFKEVIPITDSELRQKIHQTYRVQYIQDIILPTPSVFEENFLSTLTSFIFFNKVEIV 280
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13673.2896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI53_ECTSI4.580e-12699.45SMK-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KKJ6_9PHAE8.350e-11787.92SMK-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A7S3YI92_HETAK1.800e-6656.52Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A2P6NKH5_9EUKA1.270e-3537.62SMK-1 domain-containing protein n=1 Tax=Planoproto... [more]
A9SAB8_PHYPA1.260e-3434.29Predicted protein (Fragment) n=1 Tax=Physcomitrium... [more]
A4S7R9_OSTLU2.380e-3335.68SMK-1 domain-containing protein (Fragment) n=1 Tax... [more]
L8H1Z6_ACACA2.520e-3334.93SMK-1 domain-containing protein n=1 Tax=Acanthamoe... [more]
A0A8C7USK6_ONCMY2.620e-3336.32SMK-1 domain-containing protein n=1 Tax=Oncorhynch... [more]
A0A1Y1YYL8_9FUNG3.360e-3333.02DUF625-domain-containing protein n=1 Tax=Basidiobo... [more]
A0A8C5B1B1_GADMO3.520e-3336.55Protein phosphatase 4, regulatory subunit 3B n=2 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13673contigEcto-sp13_S_contig13673:981..4052 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score378.3
Seed ortholog evalue2.1e-102
Seed eggNOG ortholog2880.D7FI53
Preferred nameSMEK2
Model size558
KEGG koko:K17491
KEGG Pathwayko04212,ko04922,map04212,map04922
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000075,GO:0000228,GO:0000775,GO:0000785,GO:0000790,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005938,GO:0006109,GO:0006111,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006464,GO:0006470,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006935,GO:0006950,GO:0006952,GO:0006974,GO:0007049,GO:0007063,GO:0007154,GO:0007165,GO:0007275,GO:0007346,GO:0007399,GO:0007405,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0008283,GO:0008287,GO:0008356,GO:0009314,GO:0009411,GO:0009416,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010165,GO:0010212,GO:0010564,GO:0010604,GO:0010639,GO:0010646,GO:0010648,GO:0010675,GO:0010676,GO:0010906,GO:0010907,GO:0010921,GO:0010948,GO:0015630,GO:0016311,GO:0016604,GO:0016607,GO:0017145,GO:0019208,GO:0019211,GO:0019216,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019888,GO:0022008,GO:0022402,GO:0022414,GO:0023051,GO:0023052,GO:0023057,GO:0030154,GO:0030234,GO:0030289,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031974,GO:0031981,GO:0032268,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033313,GO:0033554,GO:0034641,GO:0035303,GO:0035304,GO:0035556,GO:0036211,GO:0036445,GO:0040011,GO:0040020,GO:0042221,GO:0042330,GO:0042742,GO:0043085,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043255,GO:0043327,GO:0043412,GO:0043666,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045165,GO:0045175,GO:0045722,GO:0045739,GO:0045786,GO:0045787,GO:0045835,GO:0045875,GO:0045913,GO:0045930,GO:0045931,GO:0045935,GO:0046483,GO:0048103,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051246,GO:0051301,GO:0051321,GO:0051336,GO:0051445,GO:0051447,GO:0051598,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0055057,GO:0055059,GO:0060255,GO:0061351,GO:0062012,GO:0062013,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071704,GO:0071944,GO:0072089,GO:0072395,GO:0072411,GO:0072462,GO:0072542,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0098542,GO:0098687,GO:0098722,GO:0098772,GO:0099568,GO:1901360,GO:1901564,GO:1901976,GO:1901977,GO:1902494,GO:1902659,GO:1902660,GO:1903046,GO:1903293,GO:1904289,GO:1904290,GO:2000001,GO:2000002,GO:2000241,GO:2000242,GO:2000779,GO:2000781,GO:2001020,GO:2001021,GO:2001022,GO:2001032,GO:2001034,GO:2001251
Exons4
EggNOG free text desc.signal transduction involved in meiotic cell cycle checkpoint
EggNOG OGsKOG2175@1,KOG2175@2759
Cds size558
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462730.0692523-CDS-Ecto-sp13_S_contig13673:980..11271681462730.0692523-CDS-Ecto-sp13_S_contig13673:980..1127Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13673 981..1127 +
1681462730.0823383-CDS-Ecto-sp13_S_contig13673:2330..24621681462730.0823383-CDS-Ecto-sp13_S_contig13673:2330..2462Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13673 2331..2462 +
1681462730.0915122-CDS-Ecto-sp13_S_contig13673:3172..32891681462730.0915122-CDS-Ecto-sp13_S_contig13673:3172..3289Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13673 3173..3289 +
1681462730.1011996-CDS-Ecto-sp13_S_contig13673:3890..40521681462730.1011996-CDS-Ecto-sp13_S_contig13673:3890..4052Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13673 3891..4052 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13673.2896.1prot_Ecto-sp13_S_contig13673.2896.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13673 981..4052 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13673.2896.1

>prot_Ecto-sp13_S_contig13673.2896.1 ID=prot_Ecto-sp13_S_contig13673.2896.1|Name=mRNA_Ecto-sp13_S_contig13673.2896.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=186bp
MYQENVGCLEIWDQICDVQGRFGNEYGRPRGGGEVAVPLPDPKMDTLGAS
GEYVGKLLKVFNDCEDLDDEESLRVLCHIFKAIVGLNDGTLLEVLLADNL
FVDMAGVFEYDLELKEKGDHRKFLTQTASFKQVLPIPDEEVVQKIHQNFR
ITFLKDALLRPMMDDAVVGTLNSLTYFNNTEIVQR*
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mRNA from alignment at Ecto-sp13_S_contig13673:981..4052+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13673.2896.1 ID=mRNA_Ecto-sp13_S_contig13673.2896.1|Name=mRNA_Ecto-sp13_S_contig13673.2896.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3072bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13673:981..4052+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTATCAGGAGAACGTGGGATGCCTCGAAATCTGGGACCAGATCTGCGA
CGTCCAGGGACGGTTTGGGAACGAGTACGGCCGGCCTAGGGGAGGGGGGG
AGGTGGCGGTGCCCTTGCCGGACCCCAAGATGGACACGCTCGGAGCGGTG
AGGGGCTGGGGCGCAAAACAAGCGACGGGGGCTTCGTGGGGAGGTCGCTT
GTTTGCCGCAGTCAGTAGTCTCTGCAGATTTCTCTCTCTTAAGTGTATGC
AAACATCTTGGATACAGTATAGAATCGGCGAAGTTGGGGTTAGGGTAAGG
GTCTGCGTACACCTTGCTGTTACATTTCGGTTCTTAACCTGCTTTTCTTT
TTCGGGGGTTGCCAGTTTGAGTGTGGACCACCGTCATGCTGTCTTTCCCT
CTGTATCTCCCTCGCAGCAGTATGCCTTAATTCCTCTCTCCCTCCCTCTC
TCTCTCTCTCTTGTGCATATCCGGGGAAAAGATCTTGGAGCTGCTGAGGG
GAGCAGGCCCAGCCGCGAAGGAATCGTACGCGGGATCGTTGTCGGAGAAG
GTGCGTCAATTTTGCTGCCGCTGCCGCTGCCGCTGCTGCTGCTGCTGCTG
TTGCTGTTCGTGCGGTGGTTGTTGCTGCAGTTACTTCTCTCGTTCTAGTC
GATGCGGGCAATACTTGGTGTCGACGTTGCTGGGGGATGTGGTGCTGTTG
AGATGGTGATTGTGATGGTGATGATGGCAGTGATGAAAGTCGTGGGCGGC
GATGGTAGTGCTGACGGTGCTGATGCTACTGCCGTAGTTATCTCTATCGG
TACGGTTGGTGCTGCTGGTGATACTGCGTGCCGTCTACAGTCATCATGCC
TGCGACAAATAGAATCGTTGACCTCACCCTCTCCTACTTGCGGCGCCTGC
CGGAGCCAGGCCACGAGCTGAATTGAAAAGAGAGGACTTGCGTCGTGGTC
TTGTCTATTTCACGTCCACGCCGCTCCTACTCGTCTTTCGTCGTAAAGGA
GATGAAGGCTGGCGAGGGAGAAGCCCACAAATTTCGTTTGAATTCATTGC
GTTTCGGCTCTTCCCCCCTTTTCCCCACGTCTTTCAGACCCTTTTTTTTT
TCATTGAGCTTTGTGTCGATTGTCGACTCCATCACTCACTTGTACTACGG
TGTTTTTGGTCCCTCCCTCTTGTTCTTTCTGGAAATAACAAATTTGGCGG
ACGGTTCTACCGGCGCGCCGGCCTCCGGGTGATCAATCTGGACTTTGCGT
CCGGTCTGACTGGACTGCGGCTGGCTGTGCATCGGACACGGCCTTGGGGC
TTTGGGACGGGGGGGGGGGGGGGGGGGGGGACCGAAATACGCCACAACAG
AGCGGAGAGTACGTGGGAAAGCTGTTGAAGGTGTTCAACGACTGCGAAGA
CCTGGATGACGAGGAGTCTCTCCGTGTGCTCTGCCACATCTTTAAGGCTA
TCGTGGGGCTAAACGACGGGACGCTGTTGGAGGTGAGCTTCCGGGGGGGG
GGAGGGGGGGTGCGTACGTTAGGAAAAATAAGTACGAACACATGACGGTT
TCCCATTCGAAATATAACCACACTCTCATGTTTTGCATGCCTTAGCGGTT
AGACCATTAACCACGCGTCTTCGAGAGGACAGAGCTTCCGGGTTGGGGGG
GGGGGGGTTCTCTGCAGTTCCACCTTGAGTAGCGAGATTCCGACTACAAA
CCCGCAATACGTTCCCCCAGTACTCCGACGCGTGTAAACCCACACGAAAA
TCGTCAGACCATTGACCTTCAATGCCGGGACGGAGCGATACGCCGGGTGT
TCGCCAGCCAAGGTACTACGTTCCACAAGAGGGGGGTACAAAGATGGAAC
GCTCCCCGTGTCTTGTGCGAAGTCTTTGTGAAAACCCGGAAGGAAAGGGG
GGGCAAGCATACATGGAATTCAAGATGCGAAAATCGTGCTTGTTGTTGTC
GTTATTGAGTGGTACACAAGAGGAGTCTGGACAGGGATTTGGACGGTGTT
ACATGTGAATACAGCTGACAGGGATCTACACGATGTTCAAATATGAAGCC
TACAACAACTGTACAAGGATCTAGACGCGTTCTATGTGAACCCAACAGCA
ACAACAGCAGCTGGACAGGGGTCTAGGTGATGTGAAATGCGACGATGACA
ACAACGATGACATCTTCATCAACATCACCAACATTATTTAAGGTGCTTCT
GGCGGACAACTTGTTCGTGGACATGGCGGGCGTGTTCGAGTACGACCTGG
AGCTGAAGGAGAAAGGGGACCACAGAAAATTCCTCACGCAAACGGCGTCG
TTCAAGCAGGTGCATCATTCTTTATTTTGTACGTTGCACTTCCTGTATCG
TTATGATTTTGCGGTTGTTTCGTCGACGCTGTCGTCATGTACCTACTGCA
TCACATGTCAAGAAAAATCTCAAGTTACACTGTACACAGACTTGCAAACA
TTTCATTTTTAGATCGTGAAGGTTGGCTGGGCTGTTCGATTCAAAAATAC
CTCAGCTTGTGTGAGCTGTTGGAGCTTGGGAAACGCCAAGGGTGGCAGCT
GGCAGCTGATTCAGACAAACACATGCTCTACTGTCGTCTTGCATCACGCC
TTGATGACGCTACTGTTACGCTCTGATGAGACCGCTCCGGAGGCGCGCCT
TGTATGAAGTCTACTTATCTAGGTCATGGTCAGCTAACAACAAGGAATGA
TGAATGTCACCGCACGCTGCACACCACCCCCGAAATGCCGTCAAGCAATT
GCACTGCGAAGCGAGCCACCACGCAACTCGCATTTTTTACTCCAAACCGA
TTACACCAACACCTCGTACCAGTTAATGATGCATACGTAATGTGTTGATG
TATTTGATGGTGGAAAATAGTTGTTAGCTAACAACAAGGAGTGATGTGGT
ATCCAATCAGGTGCTGCCGATACCGGACGAGGAGGTGGTACAGAAGATTC
ACCAGAACTTTCGGATAACTTTCCTGAAGGACGCGCTGCTTAGGCCGATG
ATGGACGACGCCGTCGTGGGGACGCTCAACTCCCTCACGTACTTCAACAA
CACGGAGATCGTGCAGAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13673:981..4052+

>mRNA_Ecto-sp13_S_contig13673.2896.1 ID=mRNA_Ecto-sp13_S_contig13673.2896.1|Name=mRNA_Ecto-sp13_S_contig13673.2896.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=558bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13673:981..4052+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTATCAGGAGAACGTGGGATGCCTCGAAATCTGGGACCAGATCTGCGA
CGTCCAGGGACGGTTTGGGAACGAGTACGGCCGGCCTAGGGGAGGGGGGG
AGGTGGCGGTGCCCTTGCCGGACCCCAAGATGGACACGCTCGGAGCGAGC
GGAGAGTACGTGGGAAAGCTGTTGAAGGTGTTCAACGACTGCGAAGACCT
GGATGACGAGGAGTCTCTCCGTGTGCTCTGCCACATCTTTAAGGCTATCG
TGGGGCTAAACGACGGGACGCTGTTGGAGGTGCTTCTGGCGGACAACTTG
TTCGTGGACATGGCGGGCGTGTTCGAGTACGACCTGGAGCTGAAGGAGAA
AGGGGACCACAGAAAATTCCTCACGCAAACGGCGTCGTTCAAGCAGGTGC
TGCCGATACCGGACGAGGAGGTGGTACAGAAGATTCACCAGAACTTTCGG
ATAACTTTCCTGAAGGACGCGCTGCTTAGGCCGATGATGGACGACGCCGT
CGTGGGGACGCTCAACTCCCTCACGTACTTCAACAACACGGAGATCGTGC
AGAGGTGA
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