mRNA_Ecto-sp13_S_contig13668.2891.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig13668.2891.1 vs. uniprot
Match: A0A6H5L9P4_9PHAE (MI domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9P4_9PHAE) HSP 1 Score: 369 bits (948), Expect = 1.910e-116 Identity = 194/202 (96.04%), Postives = 200/202 (99.01%), Query Frame = 3
Query: 177 TAKGPMSEEVARKKGKDVVAEFAVSGELGEACTCLKEIDAEVRWAAVSEAVNDSFERKQKHRDALGVLLAAGARDGALSEEALLKGFGDVLDMVPDVCIDVPQATQYVASALAPLVLGGHVKLGPLLSSPCEGLMEGGKAAEFAVVAIKQVKAAAAADGLSDDEAAARASEFLAGGLDVPKLAAMLPFICRGDEAKATALLE 782
+AKGPMSEEVARKKGKDVVAEFAVSGELGEACTCLKEIDAEVRWAAVSEAVNDSFERKQKHRDALGV+LAAGA+DGALS+EALLKGFGDVLDMVPDVCIDVPQATQYVASALAPLVLGGHVKLGPLLSSPCEGLMEGGKAAEFAVVA+KQVKAAAAADGLSD+EAAARA E LAGGLDVPKLAAMLPFICRGDEAKATALLE
Sbjct: 718 SAKGPMSEEVARKKGKDVVAEFAVSGELGEACTCLKEIDAEVRWAAVSEAVNDSFERKQKHRDALGVVLAAGAKDGALSKEALLKGFGDVLDMVPDVCIDVPQATQYVASALAPLVLGGHVKLGPLLSSPCEGLMEGGKAAEFAVVAMKQVKAAAAADGLSDEEAAARALELLAGGLDVPKLAAMLPFICRGDEAKATALLE 919
BLAST of mRNA_Ecto-sp13_S_contig13668.2891.1 vs. uniprot
Match: D8LKQ5_ECTSI (Eukaryotic initiation factor 4G n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKQ5_ECTSI) HSP 1 Score: 369 bits (948), Expect = 4.430e-116 Identity = 195/202 (96.53%), Postives = 198/202 (98.02%), Query Frame = 3
Query: 177 TAKGPMSEEVARKKGKDVVAEFAVSGELGEACTCLKEIDAEVRWAAVSEAVNDSFERKQKHRDALGVLLAAGARDGALSEEALLKGFGDVLDMVPDVCIDVPQATQYVASALAPLVLGGHVKLGPLLSSPCEGLMEGGKAAEFAVVAIKQVKAAAAADGLSDDEAAARASEFLAGGLDVPKLAAMLPFICRGDEAKATALLE 782
+AKGPMSEEVARKKGKDVVAEFAVSGELGEACTCL EIDAEVRWAAVSEAVNDSFERKQKHRDALGV+LAAGA+DGALSEEALLKGFGDVLDMVPDVCIDVPQATQYVASALAPLVLGGHVKLGPLLSSPCEGLMEGGKAAEFAVVAIKQVKAAAAADGLSDD AAARASE LAGGLDVPKLAAMLPFICRGDEAKAT LLE
Sbjct: 758 SAKGPMSEEVARKKGKDVVAEFAVSGELGEACTCLMEIDAEVRWAAVSEAVNDSFERKQKHRDALGVVLAAGAKDGALSEEALLKGFGDVLDMVPDVCIDVPQATQYVASALAPLVLGGHVKLGPLLSSPCEGLMEGGKAAEFAVVAIKQVKAAAAADGLSDDAAAARASELLAGGLDVPKLAAMLPFICRGDEAKATELLE 959
BLAST of mRNA_Ecto-sp13_S_contig13668.2891.1 vs. uniprot
Match: A0A7M5WWV8_9CNID (Uncharacterized protein n=2 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5WWV8_9CNID) HSP 1 Score: 65.5 bits (158), Expect = 1.030e-7 Identity = 37/117 (31.62%), Postives = 60/117 (51.28%), Query Frame = 3
Query: 177 TAKGPMSEEVARKKGKDVVAEFAVSGELGEACTCLKEIDA-EVRWAAVSEAVNDSFERKQKHRDALGVLLAAGARDGALSEEALLKGFGDVLDMVPDVCIDVPQATQYVASALAPLV 524
T+ + E+ RKK K + EF + EA CLKE+DA + WA V EA+ + E K ++R G L +D + KG V+++ PD+ +D+P+ Y+ L P++
Sbjct: 1093 TSPPAVDEDKMRKKTKSTIEEFFGVLDYKEAMLCLKELDAPHLHWAFVEEAIVIASEMKPQNRVNAGKLFCRMVKDNLIKFAEFQKGMSSVIEIAPDMAVDIPRFYAYMGEILGPMI 1209
BLAST of mRNA_Ecto-sp13_S_contig13668.2891.1 vs. uniprot
Match: A0A2G9I8H0_9LAMI (Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9I8H0_9LAMI) HSP 1 Score: 57.4 bits (137), Expect = 3.140e-5 Identity = 32/103 (31.07%), Postives = 56/103 (54.37%), Query Frame = 3
Query: 210 RKKGKDVVAEFAVSGELGEACTCLKEIDA-EVRWAAVSEAVNDSFERKQKHRDALGVLLAAGARDGALSEEALLKGFGDVLDMVPDVCIDVPQATQYVASALA 515
+ K D + E+ VSG++ EAC C+KE++ V V + E++Q L +L A A +G ++ + KGFG ++D V D+ +D+P A + S ++
Sbjct: 296 KAKINDFLIEYVVSGDIKEACRCIKELNVPHFHHEIVKRTVIMAMEKRQAESRLLNLLRRA-AEEGLINSSQMSKGFGRIIDTVDDLSLDIPNAKVLLQSLIS 397
BLAST of mRNA_Ecto-sp13_S_contig13668.2891.1 vs. uniprot
Match: UPI000C1CF62C (programmed cell death protein 4 n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1CF62C) HSP 1 Score: 57.0 bits (136), Expect = 4.110e-5 Identity = 35/113 (30.97%), Postives = 63/113 (55.75%), Query Frame = 3
Query: 186 GPMSEEVARKKGK--DVVAEFAVSGELGEACTCLKEIDAEV-RWAAVSEAVNDSFERKQKHRDALGVLLAAGARDGALSEEALLKGFGDVLDMVPDVCIDVPQATQYVASALA 515
G ++ V KGK +++ E+ VSG++ EAC C+K+++ V AV + E K+K + L LL A +G ++ + +GFG ++D V D+ +D+P A + S ++
Sbjct: 281 GGKNKTVEELKGKINNLLIEYVVSGDVNEACRCIKDLNVPYFHHEIVKRAVIMAME-KRKAENCLLDLLKGAAEEGLINSSQISQGFGRIIDFVDDLSLDIPNAKVILQSLIS 392
BLAST of mRNA_Ecto-sp13_S_contig13668.2891.1 vs. uniprot
Match: A0A830AXE3_9LAMI (Programmed cell death protein 4 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830AXE3_9LAMI) HSP 1 Score: 55.8 bits (133), Expect = 9.390e-5 Identity = 30/103 (29.13%), Postives = 56/103 (54.37%), Query Frame = 3
Query: 210 RKKGKDVVAEFAVSGELGEACTCLKEIDA-EVRWAAVSEAVNDSFERKQKHRDALGVLLAAGARDGALSEEALLKGFGDVLDMVPDVCIDVPQATQYVASALA 515
+ K D++ E+ SG++ EAC C+K++ V AV + E++Q L +L A + +G ++ + KGFG ++D V D+ +D+P A + S ++
Sbjct: 255 KAKINDLLIEYVASGDVKEACRCIKDLHVPHFHHEIVKRAVLMAMEKRQAENHLLDLLKGA-SEEGLINSSQISKGFGRIIDSVDDLSLDIPNAKALLQSLIS 356 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13668.2891.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig13668.2891.1 >prot_Ecto-sp13_S_contig13668.2891.1 ID=prot_Ecto-sp13_S_contig13668.2891.1|Name=mRNA_Ecto-sp13_S_contig13668.2891.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=312bp MSEEVARKKGKDVVAEFAVSGELGEACTCLKEIDAEVRWAAVSEAVNDSFback to top mRNA from alignment at Ecto-sp13_S_contig13668:97..2957+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig13668.2891.1 ID=mRNA_Ecto-sp13_S_contig13668.2891.1|Name=mRNA_Ecto-sp13_S_contig13668.2891.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2861bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13668:97..2957+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13668:97..2957+ >mRNA_Ecto-sp13_S_contig13668.2891.1 ID=mRNA_Ecto-sp13_S_contig13668.2891.1|Name=mRNA_Ecto-sp13_S_contig13668.2891.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=936bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13668:97..2957+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |