mRNA_Ecto-sp13_S_contig13657.2883.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13657.2883.1
Unique NamemRNA_Ecto-sp13_S_contig13657.2883.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13657.2883.1 vs. uniprot
Match: A0A6H5KHP8_9PHAE (DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHP8_9PHAE)

HSP 1 Score: 275 bits (704), Expect = 9.390e-80
Identity = 218/324 (67.28%), Postives = 223/324 (68.83%), Query Frame = 1 
Query:   97 ACSGKAAAREGSVGCSGSGSAGSGRRSGGGGCGARNVGDWAKKALLRKKFADAERGRRLRLRLEEEAGATATSLAGGCLESCVPRPAAAAVAEQAAMEAVAACSASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASVAIPSAVDSAGAASGSGAVSRDDGGAVTSTGVDSSTVVIEVDEYGDDFDFLTDADLQALEDQAAKTSSAXXXXXXXXXXXXXX--TQTRRDVGDHHRGNSSSANGRQTPSPGSANRITGLAGSQAGRNGFNSSDRVAN--------RGGGSGTGGSRAKPQQQPVAGSK 1038
            ACS KAAAREGSVG SGS             CG RNVGDWAKKALLRKKFADAERGRRLRLRLEEEAGATATSLAGGCLESCV RP                    XXXXXXXXXXXXXXXXX                              ASVA+PSAVDSAGA SG GA SRDDG      GV SSTVVIEVDEYGDDFDFLTDADLQALEDQAAKTSSA      XXXXXXXX  TQT++DVGDHHRGNS SA+ RQTP PGSANRITGL+GSQAGRNGF SSDR AN        RGGGSG  GSRAKPQQQ VAGSK
Sbjct:   86 ACSSKAAAREGSVGSSGSXXXXXXXXXXXXXCGGRNVGDWAKKALLRKKFADAERGRRLRLRLEEEAGATATSLAGGCLESCVTRPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAAPAVSSEEINGNPLAAQHRRSPEATVTVASVAVPSAVDSAGAVSGPGAASRDDGXXXXXVGVGSSTVVIEVDEYGDDFDFLTDADLQALEDQAAKTSSAVASSQLXXXXXXXXXQTQTQKDVGDHHRGNSGSADDRQTPPPGSANRITGLSGSQAGRNGFISSDRSANSGGSGVACRGGGSGREGSRAKPQQQQVAGSK 409
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13657.2883.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KHP8_9PHAE9.390e-8067.28DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13657contigEcto-sp13_S_contig13657:866..1905 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1041
Hectar predicted targeting categoryother localisation
Exons1
Cds size1038
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462729.0490606-CDS-Ecto-sp13_S_contig13657:865..19031681462729.0490606-CDS-Ecto-sp13_S_contig13657:865..1903Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13657 866..1903 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13657.2883.1prot_Ecto-sp13_S_contig13657.2883.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13657 866..1903 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13657.2883.1

>prot_Ecto-sp13_S_contig13657.2883.1 ID=prot_Ecto-sp13_S_contig13657.2883.1|Name=mRNA_Ecto-sp13_S_contig13657.2883.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=346bp
SKSRRGGGATGSVDGGGSSLLTRWWQPTTGGGACSGKAAAREGSVGCSGS
GSAGSGRRSGGGGCGARNVGDWAKKALLRKKFADAERGRRLRLRLEEEAG
ATATSLAGGCLESCVPRPAAAAVAEQAAMEAVAACSASGSSVTGSLSPPA
AVAIARTAPAVSAEEVNGIPSAAQHRRSPEATVTAASVAIPSAVDSAGAA
SGSGAVSRDDGGAVTSTGVDSSTVVIEVDEYGDDFDFLTDADLQALEDQA
AKTSSAVASSQLAAAAASQQTQTRRDVGDHHRGNSSSANGRQTPSPGSAN
RITGLAGSQAGRNGFNSSDRVANRGGGSGTGGSRAKPQQQPVAGSK
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mRNA from alignment at Ecto-sp13_S_contig13657:866..1905+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13657.2883.1 ID=mRNA_Ecto-sp13_S_contig13657.2883.1|Name=mRNA_Ecto-sp13_S_contig13657.2883.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1040bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13657:866..1905+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGTAAGTCGAGGCGGGGAGGAGGTGCCACAGGGTCCGTCGACGGTGGCGG
TAGTAGCCTGCTGACGCGCTGGTGGCAGCCAACAACGGGGGGGGGGGCTT
GTTCGGGCAAAGCTGCCGCGAGAGAGGGAAGTGTCGGTTGCTCTGGGAGC
GGTAGTGCCGGTTCGGGCCGAAGAAGTGGCGGTGGCGGCTGCGGCGCGAG
AAACGTAGGCGATTGGGCGAAGAAGGCGCTTCTTCGGAAGAAGTTCGCCG
ACGCGGAGCGAGGGCGCAGGCTAAGGCTTCGGCTAGAAGAAGAGGCCGGC
GCTACTGCAACTTCTCTCGCCGGAGGCTGTCTGGAGTCCTGCGTTCCGAG
GCCGGCGGCAGCGGCGGTGGCGGAGCAGGCGGCGATGGAGGCCGTGGCCG
CCTGCTCCGCGTCCGGATCGAGCGTTACCGGGAGTCTCTCCCCGCCAGCA
GCAGTAGCAATAGCTCGTACGGCCCCGGCGGTCTCCGCCGAAGAAGTTAA
TGGTATCCCCTCAGCGGCGCAGCATCGCCGCTCCCCAGAGGCAACGGTAA
CCGCGGCCTCTGTTGCGATACCCTCGGCCGTAGACTCTGCCGGCGCCGCG
AGTGGGTCGGGCGCGGTAAGCCGGGACGATGGTGGCGCTGTTACCAGTAC
CGGTGTTGATAGCAGCACGGTCGTGATCGAGGTAGACGAGTACGGCGACG
ACTTCGATTTCCTTACGGACGCCGACCTGCAGGCCCTGGAGGACCAAGCC
GCGAAGACATCTTCGGCGGTGGCCTCAAGCCAGCTAGCCGCCGCCGCCGC
ATCTCAGCAAACCCAGACTCGAAGAGACGTTGGTGATCATCACCGGGGCA
ACAGTAGTAGCGCTAACGGCCGACAGACTCCCTCGCCGGGCTCTGCGAAT
CGGATCACCGGCTTAGCAGGGTCACAGGCGGGAAGAAACGGCTTCAACTC
CTCCGACCGCGTTGCTAACCGCGGTGGTGGGTCAGGAACGGGAGGATCGA
GGGCTAAGCCGCAGCAGCAGCCAGTCGCAGGGTCGAAGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13657:866..1905+

>mRNA_Ecto-sp13_S_contig13657.2883.1 ID=mRNA_Ecto-sp13_S_contig13657.2883.1|Name=mRNA_Ecto-sp13_S_contig13657.2883.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1038bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13657:866..1905+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGTAAGTCGAGGCGGGGAGGAGGTGCCACAGGGTCCGTCGACGGTGGCGG
TAGTAGCCTGCTGACGCGCTGGTGGCAGCCAACAACGGGGGGGGGGGCTT
GTTCGGGCAAAGCTGCCGCGAGAGAGGGAAGTGTCGGTTGCTCTGGGAGC
GGTAGTGCCGGTTCGGGCCGAAGAAGTGGCGGTGGCGGCTGCGGCGCGAG
AAACGTAGGCGATTGGGCGAAGAAGGCGCTTCTTCGGAAGAAGTTCGCCG
ACGCGGAGCGAGGGCGCAGGCTAAGGCTTCGGCTAGAAGAAGAGGCCGGC
GCTACTGCAACTTCTCTCGCCGGAGGCTGTCTGGAGTCCTGCGTTCCGAG
GCCGGCGGCAGCGGCGGTGGCGGAGCAGGCGGCGATGGAGGCCGTGGCCG
CCTGCTCCGCGTCCGGATCGAGCGTTACCGGGAGTCTCTCCCCGCCAGCA
GCAGTAGCAATAGCTCGTACGGCCCCGGCGGTCTCCGCCGAAGAAGTTAA
TGGTATCCCCTCAGCGGCGCAGCATCGCCGCTCCCCAGAGGCAACGGTAA
CCGCGGCCTCTGTTGCGATACCCTCGGCCGTAGACTCTGCCGGCGCCGCG
AGTGGGTCGGGCGCGGTAAGCCGGGACGATGGTGGCGCTGTTACCAGTAC
CGGTGTTGATAGCAGCACGGTCGTGATCGAGGTAGACGAGTACGGCGACG
ACTTCGATTTCCTTACGGACGCCGACCTGCAGGCCCTGGAGGACCAAGCC
GCGAAGACATCTTCGGCGGTGGCCTCAAGCCAGCTAGCCGCCGCCGCCGC
ATCTCAGCAAACCCAGACTCGAAGAGACGTTGGTGATCATCACCGGGGCA
ACAGTAGTAGCGCTAACGGCCGACAGACTCCCTCGCCGGGCTCTGCGAAT
CGGATCACCGGCTTAGCAGGGTCACAGGCGGGAAGAAACGGCTTCAACTC
CTCCGACCGCGTTGCTAACCGCGGTGGTGGGTCAGGAACGGGAGGATCGA
GGGCTAAGCCGCAGCAGCAGCCAGTCGCAGGGTCGAAG
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