mRNA_Ecto-sp13_S_contig13655.2882.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13655.2882.1
Unique NamemRNA_Ecto-sp13_S_contig13655.2882.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13655.2882.1 vs. uniprot
Match: D8LIH7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIH7_ECTSI)

HSP 1 Score: 281 bits (718), Expect = 3.910e-94
Identity = 157/169 (92.90%), Postives = 159/169 (94.08%), Query Frame = 1 
Query:   61 GSIVDVAREKDEGALRALCQVCSASGEVGEARKACVLVTIYRRESDLFALLLRERRDXXXXXXXXXXXXXXXXXKAASAGLTVLCDMSLDDGVHLEMQSAPLVVKVVNTCGQRIAYLLEFGRAMDLATFQRAFTSARGYFRQMLTLRTLVADSFWQGFASGAGGPAVFF 567
            GSI+ VAREKDEGALRALCQVCSASGEVGEARKACVLVTIYRRESDLFALLLRER D XXXXXXXXXXXX    +A SAGLTVLCDMSLDDGVHLEMQSAPLVVKVVNTCGQRIAYLLEFGRAMDLATFQRAFTSARGYFRQMLTLRTLVADSFWQGFASGAGGPA  F
Sbjct:   18 GSILGVAREKDEGALRALCQVCSASGEVGEARKACVLVTIYRRESDLFALLLRERHDAXXXXXXXXXXXXLGGGEATSAGLTVLCDMSLDDGVHLEMQSAPLVVKVVNTCGQRIAYLLEFGRAMDLATFQRAFTSARGYFRQMLTLRTLVADSFWQGFASGAGGPAAVF 186
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BLAST of mRNA_Ecto-sp13_S_contig13655.2882.1 vs. uniprot
Match: A0A6H5JBN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBN9_9PHAE)

HSP 1 Score: 275 bits (704), Expect = 5.870e-92
Identity = 156/169 (92.31%), Postives = 158/169 (93.49%), Query Frame = 1 
Query:   61 GSIVDVAREKDEGALRALCQVCSASGEVGEARKACVLVTIYRRESDLFALLLRERRDXXXXXXXXXXXXXXXXXKAASAGLTVLCDMSLDDGVHLEMQSAPLVVKVVNTCGQRIAYLLEFGRAMDLATFQRAFTSARGYFRQMLTLRTLVADSFWQGFASGAGGPAVFF 567
            GSI+ VAREKD+GALRALCQVCS SGEVGEARKACVLVTIYRRESDLFALLLRER  XXXXXXXXXXXXX    KAASAGLTVLCDMSLDDGVHLEMQSAPLVVKVVNTCGQRIAYLLEFGRAMDL TFQRAFTSARGYFRQMLTLRTLVADSFWQGFASGAGGPA  F
Sbjct:   19 GSILGVAREKDDGALRALCQVCSTSGEVGEARKACVLVTIYRRESDLFALLLRERXXXXXXXXXXXXXXXRGGGKAASAGLTVLCDMSLDDGVHLEMQSAPLVVKVVNTCGQRIAYLLEFGRAMDLVTFQRAFTSARGYFRQMLTLRTLVADSFWQGFASGAGGPAGVF 187
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13655.2882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIH7_ECTSI3.910e-9492.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBN9_9PHAE5.870e-9292.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13655contigEcto-sp13_S_contig13655:464..3205 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size570
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-18_003620.1
Cds size570
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462728.9968867-CDS-Ecto-sp13_S_contig13655:463..6221681462728.9968867-CDS-Ecto-sp13_S_contig13655:463..622Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13655 464..622 +
1681462729.0056305-CDS-Ecto-sp13_S_contig13655:1966..21951681462729.0056305-CDS-Ecto-sp13_S_contig13655:1966..2195Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13655 1967..2195 +
1681462729.017282-CDS-Ecto-sp13_S_contig13655:3023..32051681462729.017282-CDS-Ecto-sp13_S_contig13655:3023..3205Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13655 3024..3205 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13655.2882.1prot_Ecto-sp13_S_contig13655.2882.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13655 464..3205 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13655.2882.1

>prot_Ecto-sp13_S_contig13655.2882.1 ID=prot_Ecto-sp13_S_contig13655.2882.1|Name=mRNA_Ecto-sp13_S_contig13655.2882.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=190bp
MMAAAMQQQQQQQQQQHPPGGSIVDVAREKDEGALRALCQVCSASGEVGE
ARKACVLVTIYRRESDLFALLLRERRDSPSSSSAAAAAAGRGGGKAASAG
LTVLCDMSLDDGVHLEMQSAPLVVKVVNTCGQRIAYLLEFGRAMDLATFQ
RAFTSARGYFRQMLTLRTLVADSFWQGFASGAGGPAVFF*
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mRNA from alignment at Ecto-sp13_S_contig13655:464..3205+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13655.2882.1 ID=mRNA_Ecto-sp13_S_contig13655.2882.1|Name=mRNA_Ecto-sp13_S_contig13655.2882.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2742bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13655:464..3205+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGGCTGCGGCGATGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
TCCTCCAGGAGGAAGCATCGTAGATGTTGCTCGCGAGAAGGACGAAGGCG
CCTTGCGGGCGTTGTGCCAGGTGTGCTCGGCCTCCGGCGAAGTAGGGGAA
GCCAGGAAGGTGAGAGACGTTGTCGGGGCCGGGTTCTACTTTTTTACCGG
GTGTCGGAGATGCTGGGAGAGGGAGCGGGGGTGCGAGTGTAAAGAACCCA
TTCAACGATTGCTGGCGACCCTCTTGCTCAGCGTACAGCGTGCACACCCG
CAGCTTTGTCGCTCGTGAAGCAAATACACTGTTGCGTGAGAGACGAAATC
GAAGATCTTCATATTCAACGGGAGTCATTCGCACTAGAGCCATGACAATA
TCTACAATACACGCACAGGTGGTTAGTTGTGTATATCCTGCACTCGTCTT
CAAGTAATCGCTCCGCAAATTTAAATTTCACCCCACACCCCACACCCCAC
ACCCCACAATCCTCCAATCTCACACCCCAAATCTCAAATCTCAACTCCAT
CATCATCTTTCACACCCTGGGTCCGTACGCATACCTCCACACAAGACAAC
ACGCCACACACAGCAGTCACGTCGACTTTAGTGTTGATGAAATGGCTGCG
AACTTGATCTTGCCCACCACAAAAATAAAGCAGCGGTTTGAGAGCTTAAC
CCAACACAACTGTTTGTTGCTATGAACGGAATTTGTGTTTTCGTGCAGAC
GCGATGATGATGATTGCACAAATTTAAGGTACAGCAGTAGTAGCTTTTAC
GAGCCTCGCCGGCACTCCTGACACACAATGTTTGCCGTTTGAGCTGGTTA
TAGCATTTTGGGCGACGATGCCTCCGGCCGGAGCTACAACCTAAAGATAC
ACGACACGAATACACCGCTCAGCCCATTAGCGGGGTCGTGAGACGCCTTG
TTGTCTTTACATGAAAAAAACGTTCCGTCTCCGTTAGGAAGCCTCTGACA
TGCACTGGTCCACCTGATGCGGACGCCGTCCGTGGTCACAAGCCAACCAC
CCCAAAACACCTAGAACTACGAAATATTCCTTTGCGACGTGCACTCGCAG
AGGACACAGATTCGCGAATGGCCGAGAGGGGGACGACAACAGAAGACACA
GTACCCGACAAATCGAAAATCTTGCTGGTTTCCTTGCGTCCTCAAGGTTC
TTCTATCGAAAGTACGAGAGTACCGACTATTAAGTTGGTTGATAATCGAT
GCAAGTGTGCACCCCCCCCCCCTTTCCCCCCTCGCTTTCATTTTCTCCTA
CGGTTTCCTACAAGGCCTTGTTCCGCCCCGATTCAATCGACCCCCCGAAT
GGAGTGTTAAATCAACGACGGGTGGGCGATACACCCCCACCTACCCAATG
ACGTACCACCTTCTGTTCGACGGGCTTCTAGTCTGTCCTTCGTGATTGCT
AGCGCCTCCACGTGCTTCCGACCAAATGACCGCAATAATGGCGAACGAAC
CAGGCGTGCGTCCTGGTGACGATCTACCGCAGGGAGAGCGACCTGTTCGC
GCTCTTGCTCCGAGAGCGGAGAGACTCTCCCTCTTCCTCGTCAGCGGCCG
CCGCCGCCGCAGGCCGGGGCGGTGGCAAGGCGGCGAGTGCCGGGCTGACT
GTGCTGTGCGACATGTCGCTAGATGACGGGGTTCACCTGGAGATGCAGAG
CGCCCCCCTCGTCGTCAAGGTCGTCAACACCTGTGAGTTTTTTTTTTCTT
CTATTTTTAAAAGAGAATGCACGTAGAATCAAAGAAAGACCACTCGTTGG
AGATGTAACCACGGTTGAATTCTTTGCAGTGAGTTAGAGAAAAACAGGCT
GGATACTGATAATCTTTTGAGTATTTTTATGCCTCTTCATTCACCCAGTT
TTTCATTTTTTCCTTGTTGTGGAGATGTTTTTGGGTGCACGAGTGGGCAC
CCTATCGCCATGGAAGACTTTGAGTTTCGGAACGGGGAGGGGAGGGCGTT
TAGTGTTGGCAAGTGCACCACGAGTTAGGTGCGTAGGTGGTTCTAGCCGC
GCAAATCACTGTTTTTGGTCGTCCACACTCGCCATCGCCTCTGGGTAGAC
CGCGCGTGTGTGCCCGCAGGGGTTTTCGGGATGTGCGAGCACTCCCTTAG
TCGAATGACACCCTTGTGTGTGAGGCTGTGGAGCGCTGAAGTTTTACATT
TCTAAGCTACATTTCGGTGATCGACGGTGCACAGGATTCATGGCACATTT
GTCATTACTCTCGCGTCCTCTCGTTATTCTGCTGCGTTAGTTCTGCGGTA
GGTGCATGCCCCTATGCCAACAGGTGGCAGGGTGGTTGTCCCGCCAGCAG
AATCACCATTGCTCAAATAGGTTGTCGGAGCGTTCCGAGGATCGTTCTCT
TGGCGATACTGCTGCTGTTGCGTGTGTCACCACCCCCACACCTCTCTCGA
ACACCATCTCACGTGTACTGATCATAAACAACGCTCAGCTGCCCGTGAGG
TGTATATACGTGCAGGCACAATCACTCCCACATTTTGTTTGTTTGGCTCG
GTTTTGGAAGGCGGCCAAAGGATAGCTTACCTGCTGGAGTTCGGCCGAGC
GATGGACCTGGCGACCTTCCAGCGAGCGTTTACCTCGGCGAGGGGCTACT
TCCGACAGATGCTAACCCTGCGGACTCTTGTCGCCGACTCTTTTTGGCAG
GGGTTTGCTTCTGGGGCAGGTGGGCCCGCGGTGTTTTTTTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13655:464..3205+

>mRNA_Ecto-sp13_S_contig13655.2882.1 ID=mRNA_Ecto-sp13_S_contig13655.2882.1|Name=mRNA_Ecto-sp13_S_contig13655.2882.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=570bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13655:464..3205+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGGCTGCGGCGATGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
TCCTCCAGGAGGAAGCATCGTAGATGTTGCTCGCGAGAAGGACGAAGGCG
CCTTGCGGGCGTTGTGCCAGGTGTGCTCGGCCTCCGGCGAAGTAGGGGAA
GCCAGGAAGGCGTGCGTCCTGGTGACGATCTACCGCAGGGAGAGCGACCT
GTTCGCGCTCTTGCTCCGAGAGCGGAGAGACTCTCCCTCTTCCTCGTCAG
CGGCCGCCGCCGCCGCAGGCCGGGGCGGTGGCAAGGCGGCGAGTGCCGGG
CTGACTGTGCTGTGCGACATGTCGCTAGATGACGGGGTTCACCTGGAGAT
GCAGAGCGCCCCCCTCGTCGTCAAGGTCGTCAACACCTGCGGCCAAAGGA
TAGCTTACCTGCTGGAGTTCGGCCGAGCGATGGACCTGGCGACCTTCCAG
CGAGCGTTTACCTCGGCGAGGGGCTACTTCCGACAGATGCTAACCCTGCG
GACTCTTGTCGCCGACTCTTTTTGGCAGGGGTTTGCTTCTGGGGCAGGTG
GGCCCGCGGTGTTTTTTTAA
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