mRNA_Ecto-sp13_S_contig13645.2877.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13645.2877.1
Unique NamemRNA_Ecto-sp13_S_contig13645.2877.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13645.2877.1 vs. uniprot
Match: D7FYH4_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYH4_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 8.400e-50
Identity = 77/90 (85.56%), Postives = 83/90 (92.22%), Query Frame = 1
Query:    1 MPGVEGVLALVREGGDMGQRFEHYCKTNLCLESWDFLVDAAFYEMMDSTDADEQFMAFTMISDKYLLRTSPDEVNISSATSEHMASFRPR 270
            M GVEGVLALVREGGDM +RFEHYCKTNLCLESWDFLVDA  YEMMD+TDADEQFM FTMISD+YLL TSPDEVNISSATS+H+A+FR R
Sbjct:    1 MSGVEGVLALVREGGDMSKRFEHYCKTNLCLESWDFLVDATLYEMMDATDADEQFMTFTMISDRYLLATSPDEVNISSATSKHVAAFRTR 90          
BLAST of mRNA_Ecto-sp13_S_contig13645.2877.1 vs. uniprot
Match: D7FYH3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYH3_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 4.000e-48
Identity = 74/90 (82.22%), Postives = 81/90 (90.00%), Query Frame = 1
Query:    1 MPGVEGVLALVREGGDMGQRFEHYCKTNLCLESWDFLVDAAFYEMMDSTDADEQFMAFTMISDKYLLRTSPDEVNISSATSEHMASFRPR 270
            MPGVEGVLALVREGGDM +RFEHYCK NLCLESWDFL+D A YEMMD+T ADEQFMAFTMISD+YLL TSPDEVNI+ AT +HMA+FR R
Sbjct:    1 MPGVEGVLALVREGGDMSKRFEHYCKMNLCLESWDFLIDRALYEMMDTTHADEQFMAFTMISDRYLLATSPDEVNIAGATRKHMAAFRTR 90          
BLAST of mRNA_Ecto-sp13_S_contig13645.2877.1 vs. uniprot
Match: A0A6H5L0L8_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0L8_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.630e-22
Identity = 48/87 (55.17%), Postives = 63/87 (72.41%), Query Frame = 1
Query:   10 VEGVLALVREGGDMGQRFEHYCKTNLCLESWDFLVDAAFYEMMDSTDADEQFMAFTMISDKYLLRTSPDEVNISSATSEHMASFRPR 270
            V+GV AL  +GGDM  RF  + + NLC+ESWDF++DA  YEM  S + D+QF  F ++ ++YLL TSPDEVNISS  S+ MASF+ R
Sbjct:  278 VDGVYALAVKGGDMADRFGRFVQENLCMESWDFILDAVKYEMESSCEPDDQFDEFLILLNQYLLPTSPDEVNISSKMSKRMASFKTR 364          
BLAST of mRNA_Ecto-sp13_S_contig13645.2877.1 vs. uniprot
Match: A0A6H5K5R8_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5R8_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.580e-19
Identity = 46/92 (50.00%), Postives = 59/92 (64.13%), Query Frame = 1
Query:   10 VEGVLALVREGGDMGQRFEHYCKTNLCLESWDFLVDAAFYEMMDSTDA-----DEQFMAFTMISDKYLLRTSPDEVNISSATSEHMASFRPR 270
            V+GV+ L   GG+M ++F  +C+ NLC+ESWDFLVD   YE M  +       DEQF  F  I + YLL TSPDE+NISSA  + +A FR R
Sbjct:  194 VDGVVGLASSGGEMAEQFGKFCRENLCMESWDFLVDVVRYERMAPSPIARNPEDEQFNCFLHILNHYLLPTSPDEINISSAMHKRIAPFRTR 285          
BLAST of mRNA_Ecto-sp13_S_contig13645.2877.1 vs. uniprot
Match: D8LQW8_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQW8_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 1.460e-18
Identity = 43/90 (47.78%), Postives = 59/90 (65.56%), Query Frame = 1
Query:   16 GVLALVREGGDMGQRFEHYCKTNLCLESWDFLVDAAFYE-----MMDSTDADEQFMAFTMISDKYLLRTSPDEVNISSATSEHMASFRPR 270
            GVL L   GG++ Q+F  +C+ NLC+ESWDFLVD   YE     ++ +   DEQF +F  I ++YLL TSPDE+NISS+ S  + +F  R
Sbjct:   33 GVLRLASGGGELAQQFGKFCQENLCMESWDFLVDVVRYERIAPSLIANDPEDEQFNSFLFILNQYLLPTSPDEINISSSMSTRILAFGTR 122          
BLAST of mRNA_Ecto-sp13_S_contig13645.2877.1 vs. uniprot
Match: D8LQX1_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQX1_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 4.510e-18
Identity = 43/90 (47.78%), Postives = 59/90 (65.56%), Query Frame = 1
Query:   16 GVLALVREGGDMGQRFEHYCKTNLCLESWDFLVDAAFYE-----MMDSTDADEQFMAFTMISDKYLLRTSPDEVNISSATSEHMASFRPR 270
            GVL L   GG++ Q+F  +C+ NLC+ESWDFLVD   YE     ++ +   DEQF +F  I ++YLL TSPDE+NISS+ S  + +F  R
Sbjct:   96 GVLRLASGGGELAQQFGKFCQENLCMESWDFLVDVVRYERIAPSLVANDPEDEQFNSFLFILNQYLLPTSPDEINISSSMSTRILAFGTR 185          
BLAST of mRNA_Ecto-sp13_S_contig13645.2877.1 vs. uniprot
Match: A0A6H5KE83_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE83_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 3.280e-12
Identity = 43/124 (34.68%), Postives = 57/124 (45.97%), Query Frame = 1
Query:   10 VEGVLALVREGGDMGQRFEHYCKTNLCLESWDFLVDAAFYEMMDSTDA-------------------------------------DEQFMAFTMISDKYLLRTSPDEVNISSATSEHMASFRPR 270
            V+GV+ L    G+M ++F  +C+ NLC+ESWD LVD   YE M  + +                                     DEQ   F  I + YLL TSPDE+NISSA  + +A FR R
Sbjct:  320 VDGVVGLASSVGEMAEQFGKFCRENLCMESWDLLVDVVRYERMVPSPSNIFCRVGFDTRWSCLWNFSHPNGLTWFVRFADRENPEDEQLKCFLHILNHYLLPTSPDEINISSAMHKRIAPFRTR 443          
BLAST of mRNA_Ecto-sp13_S_contig13645.2877.1 vs. uniprot
Match: D8LQY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQY9_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 5.700e-6
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 1
Query:  133 MMDSTDADEQFMAFTMISDKYLLRTSPDEVNISSATSEHMASFRPR 270
            MM S +  EQF +F  I ++YLL TSPDE+NISSA S+HMA+FR R
Sbjct:  157 MMSSPE--EQFNSFLYILNQYLLPTSPDEINISSAMSKHMATFRTR 200          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13645.2877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FYH4_ECTSI8.400e-5085.56RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FYH3_ECTSI4.000e-4882.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0L8_9PHAE1.630e-2255.17RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K5R8_9PHAE1.580e-1950.00RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LQW8_ECTSI1.460e-1847.78RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LQX1_ECTSI4.510e-1847.78RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KE83_9PHAE3.280e-1234.68RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LQY9_ECTSI5.700e-660.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13645contigEcto-sp13_S_contig13645:4207..4612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size270
Hectar predicted targeting categoryother localisation
Exons2
Cds size270
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462728.3827734-CDS-Ecto-sp13_S_contig13645:4206..43441681462728.3827734-CDS-Ecto-sp13_S_contig13645:4206..4344Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13645 4207..4344 +
1681462728.3938468-CDS-Ecto-sp13_S_contig13645:4480..46121681462728.3938468-CDS-Ecto-sp13_S_contig13645:4480..4612Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13645 4481..4612 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13645.2877.1prot_Ecto-sp13_S_contig13645.2877.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13645 4207..4612 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13645.2877.1

>prot_Ecto-sp13_S_contig13645.2877.1 ID=prot_Ecto-sp13_S_contig13645.2877.1|Name=mRNA_Ecto-sp13_S_contig13645.2877.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=90bp
MPGVEGVLALVREGGDMGQRFEHYCKTNLCLESWDFLVDAAFYEMMDSTD
ADEQFMAFTMISDKYLLRTSPDEVNISSATSEHMASFRPR
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mRNA from alignment at Ecto-sp13_S_contig13645:4207..4612+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13645.2877.1 ID=mRNA_Ecto-sp13_S_contig13645.2877.1|Name=mRNA_Ecto-sp13_S_contig13645.2877.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=406bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13645:4207..4612+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGGGTGTGGAAGGCGTGCTAGCGCTCGTGCGCGAAGGCGGAGATAT GGGCCAGCGCTTCGAACACTATTGCAAGACAAACCTATGCCTGGAAAGCT GGGACTTTCTTGTAGATGCGGCCTTCTACGAGATGATGGTGAGAGCCTGC TCCGTGTTCTTTGTTTGGACATGACTGATGTCCTGGTTCACATGCTTGTG ATGCACACAACATGCATATCACAGTGTTTGCTGACTCACGAAACGCTGTG TTCGCCTTCTGGTTTGTGCTTCAGGACTCCACTGACGCAGACGAGCAGTT CATGGCCTTTACCATGATCTCAGACAAATACTTGCTGCGCACATCTCCAG ATGAGGTCAATATCTCTAGCGCCACCAGCGAGCACATGGCTTCTTTCAGA CCAAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13645:4207..4612+

>mRNA_Ecto-sp13_S_contig13645.2877.1 ID=mRNA_Ecto-sp13_S_contig13645.2877.1|Name=mRNA_Ecto-sp13_S_contig13645.2877.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13645:4207..4612+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGGGTGTGGAAGGCGTGCTAGCGCTCGTGCGCGAAGGCGGAGATAT
GGGCCAGCGCTTCGAACACTATTGCAAGACAAACCTATGCCTGGAAAGCT
GGGACTTTCTTGTAGATGCGGCCTTCTACGAGATGATGGACTCCACTGAC
GCAGACGAGCAGTTCATGGCCTTTACCATGATCTCAGACAAATACTTGCT
GCGCACATCTCCAGATGAGGTCAATATCTCTAGCGCCACCAGCGAGCACA
TGGCTTCTTTCAGACCAAGG
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