mRNA_Ecto-sp13_S_contig13632.2871.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13632.2871.1
Unique NamemRNA_Ecto-sp13_S_contig13632.2871.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13632.2871.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE)

HSP 1 Score: 229 bits (585), Expect = 7.780e-68
Identity = 116/120 (96.67%), Postives = 116/120 (96.67%), Query Frame = 1 
Query:    1 IEAVLKYILRFQAYDGDGGALGNIKAYYIGMTEEQHRLMLHGHLMVWVHGFTSREQLRQDVGYSLKKHAELAKYIGRIIYNQVMSVEEVEFGLFNQSEPVYNNVVLPNASPFDEGFAQQN 360
            IEAVLKYILRFQA  GDGGALGNIKA YIGMTEEQHRLMLHGHLMVWVHGFTSREQLRQ VGYSLKKHAELAKYIGRIIYNQVMSVEEVEFGLFNQSEPVYNNVVLPNASPFDEGFAQQN
Sbjct:  485 IEAVLKYILRFQANYGDGGALGNIKA-YIGMTEEQHRLMLHGHLMVWVHGFTSREQLRQGVGYSLKKHAELAKYIGRIIYNQVMSVEEVEFGLFNQSEPVYNNVVLPNASPFDEGFAQQN 603
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BLAST of mRNA_Ecto-sp13_S_contig13632.2871.1 vs. uniprot
Match: D7G456_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G456_ECTSI)

HSP 1 Score: 204 bits (518), Expect = 5.920e-66
Identity = 101/120 (84.17%), Postives = 108/120 (90.00%), Query Frame = 1 
Query:    1 IEAVLKYILRFQAYDGDGGALGNIKAYYIGMTEEQHRLMLHGHLMVWVHGFTSREQLRQDVGYSLKKHAELAKYIGRIIYNQVMSVEEVEFGLFNQSEPVYNNVVLPNASPFDEGFAQQN 360
            +EAVLKYILRF A DGDGGALGNIKA +IGMTEEQHRLMLHGHLMVWVHGFTSREQLR D+G++LKKHAELA YIGRIIYNQVMS+EEVEFGL N  EPVYN VV+PNASPFDE  A QN
Sbjct:    1 MEAVLKYILRFGANDGDGGALGNIKA-HIGMTEEQHRLMLHGHLMVWVHGFTSREQLRNDIGHNLKKHAELANYIGRIIYNQVMSLEEVEFGLLNAYEPVYNKVVVPNASPFDESAAHQN 119
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BLAST of mRNA_Ecto-sp13_S_contig13632.2871.1 vs. uniprot
Match: A0A6H5K2C0_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2C0_9PHAE)

HSP 1 Score: 202 bits (513), Expect = 8.990e-60
Identity = 112/162 (69.14%), Postives = 113/162 (69.75%), Query Frame = 1 
Query:    1 IEAVLKYILRFQAYDGDGGALGNIKAYYIGMTEEQH------------------------------------------RLMLHGHLMVWVHGFTSREQLRQDVGYSLKKHAELAKYIGRIIYNQVMSVEEVEFGLFNQSEPVYNNVVLPNASPFDEGFAQQN 360
            IEAVLKYILRFQA DGDGGALGNIKA YI MTEEQH                                              HGHLMVWVHGFTSREQLRQDVGYSLKKHAELAKYIGRIIYNQVMSVEEVEFGLFNQSEPVYNNVVLPNASPFD+GFAQQN
Sbjct:  118 IEAVLKYILRFQANDGDGGALGNIKA-YICMTEEQHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGHLMVWVHGFTSREQLRQDVGYSLKKHAELAKYIGRIIYNQVMSVEEVEFGLFNQSEPVYNNVVLPNASPFDKGFAQQN 278
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BLAST of mRNA_Ecto-sp13_S_contig13632.2871.1 vs. uniprot
Match: A0A6H5K355_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K355_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 2.120e-57
Identity = 102/126 (80.95%), Postives = 110/126 (87.30%), Query Frame = 1 
Query:    1 IEAVLKYILRFQAYDGDGGALGNIKAYYIGMTEEQHRLMLHGHLMVWVHGFTSREQLRQDVGYSLKKHAELAK------YIGRIIYNQVMSVEEVEFGLFNQSEPVYNNVVLPNASPFDEGFAQQN 360
            +EAV+KYILRF A DGDGGALGNIKA YIGMTEEQHRLMLHGHLMVWVHGFTSRE LR D+G SLKKHA+LA+      YIGR+IYNQVMS+EEVEF L N SEPVYNNV+LPNASPFDEG AQQN
Sbjct:  379 MEAVVKYILRFGAKDGDGGALGNIKA-YIGMTEEQHRLMLHGHLMVWVHGFTSRE-LRDDIGRSLKKHAKLARVQEVLYYIGRLIYNQVMSLEEVEFSLLNASEPVYNNVMLPNASPFDEGIAQQN 502
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BLAST of mRNA_Ecto-sp13_S_contig13632.2871.1 vs. uniprot
Match: A0A6H5KK28_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK28_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 4.800e-40
Identity = 71/73 (97.26%), Postives = 71/73 (97.26%), Query Frame = 1 
Query:    1 IEAVLKYILRFQAYDGDGGALGNIKAYYIGMTEEQHRLMLHGHLMVWVHGFTSREQLRQDVGYSLKKHAELAK 219
            IEAVLKYILRFQA DGDGGALGNIKA YIGMTEEQHRLMLHGHLMVWVHGFTSREQLRQDVGYSLKKHAELAK
Sbjct:  131 IEAVLKYILRFQANDGDGGALGNIKA-YIGMTEEQHRLMLHGHLMVWVHGFTSREQLRQDVGYSLKKHAELAK 202
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BLAST of mRNA_Ecto-sp13_S_contig13632.2871.1 vs. uniprot
Match: A0A6H5K657_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K657_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 1.430e-36
Identity = 70/73 (95.89%), Postives = 70/73 (95.89%), Query Frame = 1 
Query:    1 IEAVLKYILRFQAYDGDGGALGNIKAYYIGMTEEQHRLMLHGHLMVWVHGFTSREQLRQDVGYSLKKHAELAK 219
            IEAVLKYILRFQA DGDGG LGNIKA YIGMTEEQHRLMLHGHLMVWVHGFTSREQLRQDVGYSLKKHAELAK
Sbjct:  441 IEAVLKYILRFQANDGDGGPLGNIKA-YIGMTEEQHRLMLHGHLMVWVHGFTSREQLRQDVGYSLKKHAELAK 512
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BLAST of mRNA_Ecto-sp13_S_contig13632.2871.1 vs. uniprot
Match: A0A6H5KIB1_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIB1_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 2.660e-18
Identity = 40/89 (44.94%), Postives = 62/89 (69.66%), Query Frame = 1 
Query:    1 IEAVLKYILRFQAYDGDGGALGNIKAYYIGMTEEQHRLMLHGHLMVWVHGFTSREQLRQDVGYSLKKHAELAKYIGRIIYNQVMSVEEV 267
            I+ VL  +LRF A DGDGG LG +K  Y+GMTEEQ RLMLH HL+VW++G+      R  +  + +++ ELA+Y+  I++NQ+ ++ ++
Sbjct:  771 IQGVLTCLLRFGASDGDGGVLGRVKG-YVGMTEEQKRLMLHAHLLVWIYGYNDFVSFRALMDKTPRRYTELARYLDNIVFNQIATLADI 858
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BLAST of mRNA_Ecto-sp13_S_contig13632.2871.1 vs. uniprot
Match: A0A6H5K8N9_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8N9_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 6.570e-18
Identity = 41/89 (46.07%), Postives = 63/89 (70.79%), Query Frame = 1 
Query:    1 IEAVLKYILRFQAYDGDGGALGNIKAYYIGMTEEQHRLMLHGHLMVWVHGFTSREQLRQDVGYSLKKHAELAKYIGRIIYNQVMSVEEV 267
            I+AVL  +LRF A DGDGG LG +K  Y+GMTEEQ RL LH HL+VWV+G+      R+ +  +  ++ ELA+Y+ ++I+NQ+ ++ ++
Sbjct:  626 IDAVLTCLLRFGACDGDGGVLGRVKG-YVGMTEEQKRLTLHCHLLVWVYGYNDFASFRELMDKTPTRYFELAEYLDKVIFNQIATLSDI 713
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BLAST of mRNA_Ecto-sp13_S_contig13632.2871.1 vs. uniprot
Match: A0A6H5L0L4_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0L4_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 6.660e-18
Identity = 41/89 (46.07%), Postives = 63/89 (70.79%), Query Frame = 1 
Query:    1 IEAVLKYILRFQAYDGDGGALGNIKAYYIGMTEEQHRLMLHGHLMVWVHGFTSREQLRQDVGYSLKKHAELAKYIGRIIYNQVMSVEEV 267
            I+AVL  +LRF A DGDGG LG +K  Y+GMTEEQ RL LH HL+VWV+G+      R+ +  +  ++ ELA+Y+ ++I+NQ+ ++ ++
Sbjct:  706 IDAVLTCLLRFGACDGDGGVLGRVKG-YVGMTEEQKRLTLHCHLLVWVYGYNDFASFRELMDKTPTRYFELAEYLDKVIFNQIATLSDI 793
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BLAST of mRNA_Ecto-sp13_S_contig13632.2871.1 vs. uniprot
Match: A0A6H5K882_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K882_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 6.670e-18
Identity = 51/123 (41.46%), Postives = 72/123 (58.54%), Query Frame = 1 
Query:    4 EAVLKYILRFQAYDGDGGALGNIKAYYIGMTEEQHRLMLHGHLMVWVHGFTSREQLRQDVGYSLKKHAELAKYIGRIIYNQVMSVEEVEFGLFNQ-------SEPVYNNVVLP-NASPFDEGF 348
            +AVL  +LRF A DGDGG L  +K  Y+GMT+EQ RLMLH H++VWV+GF      R  +    +K+ +LA+++ R+I+NQV+S   V   +          SEP   NV  P +A P +  F
Sbjct:  420 DAVLTCLLRFDARDGDGGVLERVKG-YLGMTKEQRRLMLHFHVLVWVYGFNDFSSFRDLMDKRPEKYNKLARFLERVIFNQVVSFANVNLAMHGHDHTPRASSEPEPENVSDPLHAFPVERCF 541
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13632.2871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5K1H7_9PHAE7.780e-6896.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G456_ECTSI5.920e-6684.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K2C0_9PHAE8.990e-6069.14Helitron_like_N domain-containing protein n=1 Tax=... [more]
A0A6H5K355_9PHAE2.120e-5780.95Helitron_like_N domain-containing protein n=1 Tax=... [more]
A0A6H5KK28_9PHAE4.800e-4097.26Helitron_like_N domain-containing protein n=1 Tax=... [more]
A0A6H5K657_9PHAE1.430e-3695.89Helitron_like_N domain-containing protein n=1 Tax=... [more]
A0A6H5KIB1_9PHAE2.660e-1844.94ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5K8N9_9PHAE6.570e-1846.07Helitron_like_N domain-containing protein n=1 Tax=... [more]
A0A6H5L0L4_9PHAE6.660e-1846.07Helitron_like_N domain-containing protein n=1 Tax=... [more]
A0A6H5K882_9PHAE6.670e-1841.46ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13632contigEcto-sp13_S_contig13632:2093..2556 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score87.8
Seed ortholog evalue3.7e-15
Seed eggNOG ortholog2880.D7G3U9
Model size360
KEGG koko:K15255,ko:K20647
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.G-quadruplex DNA unwinding
EggNOG OGsCOG0507@1,KOG0987@2759
EC3.6.4.12
Cds size360
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462727.9220085-CDS-Ecto-sp13_S_contig13632:2092..22341681462727.9220085-CDS-Ecto-sp13_S_contig13632:2092..2234Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13632 2093..2234 -
1681462727.9316597-CDS-Ecto-sp13_S_contig13632:2338..25561681462727.9316597-CDS-Ecto-sp13_S_contig13632:2338..2556Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13632 2339..2556 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13632.2871.1prot_Ecto-sp13_S_contig13632.2871.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13632 2093..2556 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13632.2871.1

>prot_Ecto-sp13_S_contig13632.2871.1 ID=prot_Ecto-sp13_S_contig13632.2871.1|Name=mRNA_Ecto-sp13_S_contig13632.2871.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=120bp
IEAVLKYILRFQAYDGDGGALGNIKAYYIGMTEEQHRLMLHGHLMVWVHG
FTSREQLRQDVGYSLKKHAELAKYIGRIIYNQVMSVEEVEFGLFNQSEPV
YNNVVLPNASPFDEGFAQQN
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mRNA from alignment at Ecto-sp13_S_contig13632:2093..2556-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13632.2871.1 ID=mRNA_Ecto-sp13_S_contig13632.2871.1|Name=mRNA_Ecto-sp13_S_contig13632.2871.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=464bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13632:2093..2556- (Ectocarpus species13 EcNAP12_S_4_19m)
ATCGAGGCGGTGCTGAAATATATTCTAAGGTTTCAGGCTTACGATGGCGA
TGGTGGGGCGCTAGGCAACATCAAAGCTTATTATATCGGCATGACCGAAG
AGCAGCATCGTCTAATGCTTCACGGTCATCTCATGGTATGGGTGCATGGG
TTCACGAGCCGGGAACAGTTGCGACAAGACGTTGGGTACAGCCTGAAGAA
GCACGCCGAACTAGCCAAGTGAGTACATTTCGTGTTATATACATTTATGT
TTTGCACCATTCGCCTTCTATTTTTGGTACAATAATTCTTCATGTGTTGA
TTCTGATTTTGTGTTTGAACAGGTACATCGGACGAATAATCTACAACCAG
GTCATGTCCGTCGAAGAGGTAGAGTTCGGCCTCTTCAACCAATCCGAGCC
AGTGTACAACAACGTTGTGCTCCCCAACGCGTCACCGTTTGATGAGGGGT
TCGCTCAACAAAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13632:2093..2556-

>mRNA_Ecto-sp13_S_contig13632.2871.1 ID=mRNA_Ecto-sp13_S_contig13632.2871.1|Name=mRNA_Ecto-sp13_S_contig13632.2871.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=360bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13632:2093..2556- (Ectocarpus species13 EcNAP12_S_4_19m)
ATCGAGGCGGTGCTGAAATATATTCTAAGGTTTCAGGCTTACGATGGCGA
TGGTGGGGCGCTAGGCAACATCAAAGCTTATTATATCGGCATGACCGAAG
AGCAGCATCGTCTAATGCTTCACGGTCATCTCATGGTATGGGTGCATGGG
TTCACGAGCCGGGAACAGTTGCGACAAGACGTTGGGTACAGCCTGAAGAA
GCACGCCGAACTAGCCAAGTACATCGGACGAATAATCTACAACCAGGTCA
TGTCCGTCGAAGAGGTAGAGTTCGGCCTCTTCAACCAATCCGAGCCAGTG
TACAACAACGTTGTGCTCCCCAACGCGTCACCGTTTGATGAGGGGTTCGC
TCAACAAAAC
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