mRNA_Ecto-sp13_S_contig13630.2869.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13630.2869.1
Unique NamemRNA_Ecto-sp13_S_contig13630.2869.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13630.2869.1 vs. uniprot
Match: D8LDE3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE3_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 2.890e-34
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 1 
Query:    1 CRAACSGSPRFGLQYGRECWCGTEDEDYTKHGASTDCDYPCRGNEDYTCGGFDAMNIF 174
            CRAACSGSP FGLQYGRECWCGTEDEDYTKHGASTDCDYPCRGNEDYTCGGFDAMNIF
Sbjct:  875 CRAACSGSPLFGLQYGRECWCGTEDEDYTKHGASTDCDYPCRGNEDYTCGGFDAMNIF 932
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BLAST of mRNA_Ecto-sp13_S_contig13630.2869.1 vs. uniprot
Match: D8LEL0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEL0_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 1.550e-17
Identity = 33/58 (56.90%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:    1 CRAACSGSPRFGLQYGRECWCGTEDEDYTKHGASTDCDYPCRGNEDYTCGGFDAMNIF 174
            C   C GS  F  QYGRECWCG++  DY  HG ST+C YPC G+ D  CGGFDA N++
Sbjct:  123 CELTCLGSTYFATQYGRECWCGSDGADYALHGESTECTYPCSGDADQLCGGFDAANVY 180
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BLAST of mRNA_Ecto-sp13_S_contig13630.2869.1 vs. uniprot
Match: D7FLI7_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLI7_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 3.330e-15
Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:    1 CRAACSGSPRFGLQYGRECWCGTEDEDYTKHGASTDCDYPCRGNEDYTCGGFDAMNIF 174
            C+A C G   FGLQYG++C+CGT DEDYT +G S DC Y C G+ + TCGG  AM+IF
Sbjct:    6 CKATCVGYAYFGLQYGKQCFCGTADEDYTVYGESDDCTYSCTGDSESTCGGRWAMDIF 63
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BLAST of mRNA_Ecto-sp13_S_contig13630.2869.1 vs. uniprot
Match: D7FRS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRS1_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.160e-14
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:    1 CRAACSGSPRFGLQYGRECWCGTEDEDYTKHGASTDCDYPCRGNEDYTCGGFDAMNIF 174
            C A C+G+  FG+QYGREC+CG    D  +HG ST CDY C G+ D  CGGF AM+++
Sbjct:  869 CEAECTGNTYFGMQYGRECFCGGSSTDLLQHGESTSCDYECPGDSDQVCGGFYAMSVY 926
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BLAST of mRNA_Ecto-sp13_S_contig13630.2869.1 vs. uniprot
Match: D7FRS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRS2_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 1.570e-14
Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:    1 CRAACSGSPRFGLQYGRECWCGTEDEDYTKHGASTDCDYPCRGNEDYTCGGFDAMNIF 174
            C A C+GS  FG+QYGREC+CG    D  +HG ST CDY C G+ D  CGGF AM+++
Sbjct:  454 CEAECTGSTYFGMQYGRECFCGGSSTDLLQHGESTACDYECPGDSDELCGGFYAMSVY 511
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BLAST of mRNA_Ecto-sp13_S_contig13630.2869.1 vs. uniprot
Match: D8LF45_ECTSI (Beta-xylosidase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF45_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 2.640e-14
Identity = 29/58 (50.00%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:    1 CRAACSGSPRFGLQYGRECWCGTEDEDYTKHGASTDCDYPCRGNEDYTCGGFDAMNIF 174
            C+AAC G   +GLQYG++C+CG  DED+T+HG S +C   C G+    CGG  AMN++
Sbjct:   30 CKAACEGYAFYGLQYGKQCFCGASDEDFTRHGESQECLLRCTGDRKSICGGVWAMNVY 87
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BLAST of mRNA_Ecto-sp13_S_contig13630.2869.1 vs. uniprot
Match: D7FLI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLI8_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 1.410e-13
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:    1 CRAACSGSPRFGLQYGRECWCGTEDEDYTKHGASTDCDYPCRGNEDYTCGGFDAMNIF 174
            C+A C G   +GLQY  +C+CGT DEDYT HG S +C YPC G+   TCGG  AM+++
Sbjct:  297 CKATCVGYAYYGLQYALQCFCGTADEDYTLHGESNNCLYPCTGDASSTCGGAWAMDVY 354
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BLAST of mRNA_Ecto-sp13_S_contig13630.2869.1 vs. uniprot
Match: D7FTD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD8_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 1.880e-13
Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:    1 CRAACSGSPRFGLQYGRECWCGTEDEDYTKHGASTDCDYPCRGNEDYTCGGFDAMNIF 174
            C A C+G+  FGLQYGREC+CG    D  +HG S+ C+Y C G+ D  CGGF AM+++
Sbjct:  407 CEAECTGNTYFGLQYGRECFCGGSSTDLLEHGESSACNYECPGDSDQVCGGFYAMSVY 464
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BLAST of mRNA_Ecto-sp13_S_contig13630.2869.1 vs. uniprot
Match: A0A6H5JPQ4_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPQ4_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 2.640e-13
Identity = 32/57 (56.14%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    1 CRAACSGSPRFGLQYGRECWCGTEDEDYTKHGASTDCDYPCRGNEDYTCGGFDAMNI 171
            C+AAC G   +GLQY +EC+CGT DEDYT +G S +C   C G+E  TCGGF AM++
Sbjct:   75 CKAACVGYAYYGLQYRKECFCGTADEDYTVYGESDNCVLSCTGDESSTCGGFWAMDV 131
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BLAST of mRNA_Ecto-sp13_S_contig13630.2869.1 vs. uniprot
Match: D7FTD7_ECTSI (WSC domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD7_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 3.220e-13
Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:    1 CRAACSGSPRFGLQYGRECWCGTEDEDYTKHGASTDCDYPCRGNEDYTCGGFDAMNIF 174
            C A C G+  FGLQYGREC+CG    D  +HG S+ C+Y C G+ D  CGGF AM+++
Sbjct:  331 CEAKCRGNTYFGLQYGRECFCGGSSTDLLEHGESSACNYECPGDSDQVCGGFYAMSVY 388
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13630.2869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDE3_ECTSI2.890e-3498.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LEL0_ECTSI1.550e-1756.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FLI7_ECTSI3.330e-1558.62WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FRS1_ECTSI1.160e-1453.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRS2_ECTSI1.570e-1455.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LF45_ECTSI2.640e-1450.00Beta-xylosidase, putative n=1 Tax=Ectocarpus silic... [more]
D7FLI8_ECTSI1.410e-1353.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTD8_ECTSI1.880e-1351.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPQ4_9PHAE2.640e-1356.14WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FTD7_ECTSI3.220e-1351.72WSC domain containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13630contigEcto-sp13_S_contig13630:2922..3095 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score134.4
Seed ortholog evalue1.7e-29
Seed eggNOG ortholog2880.D8LDE3
Model size174
KEGG rclassRC00467
KEGG koko:K15920
KEGG ReactionR01433
KEGG Pathwayko00520,ko01100,map00520,map01100
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC3.2.1.37
Cds size174
COG Functional cat.U
CAZyGH3
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462727.8700519-CDS-Ecto-sp13_S_contig13630:2921..30951681462727.8700519-CDS-Ecto-sp13_S_contig13630:2921..3095Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13630 2922..3095 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13630.2869.1prot_Ecto-sp13_S_contig13630.2869.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13630 2922..3095 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13630.2869.1

>prot_Ecto-sp13_S_contig13630.2869.1 ID=prot_Ecto-sp13_S_contig13630.2869.1|Name=mRNA_Ecto-sp13_S_contig13630.2869.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=58bp
CRAACSGSPRFGLQYGRECWCGTEDEDYTKHGASTDCDYPCRGNEDYTCG
GFDAMNIF
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mRNA from alignment at Ecto-sp13_S_contig13630:2922..3095-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13630.2869.1 ID=mRNA_Ecto-sp13_S_contig13630.2869.1|Name=mRNA_Ecto-sp13_S_contig13630.2869.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13630:2922..3095- (Ectocarpus species13 EcNAP12_S_4_19m)
TGCCGGGCCGCCTGCAGCGGCTCCCCGCGCTTCGGCCTGCAGTACGGACG
CGAGTGCTGGTGCGGCACGGAAGACGAGGACTACACTAAGCACGGCGCCT
CTACCGACTGCGACTACCCCTGTAGGGGCAACGAAGACTACACTTGCGGC
GGATTCGACGCCATGAACATCTTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13630:2922..3095-

>mRNA_Ecto-sp13_S_contig13630.2869.1 ID=mRNA_Ecto-sp13_S_contig13630.2869.1|Name=mRNA_Ecto-sp13_S_contig13630.2869.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13630:2922..3095- (Ectocarpus species13 EcNAP12_S_4_19m)
TGCCGGGCCGCCTGCAGCGGCTCCCCGCGCTTCGGCCTGCAGTACGGACG
CGAGTGCTGGTGCGGCACGGAAGACGAGGACTACACTAAGCACGGCGCCT
CTACCGACTGCGACTACCCCTGTAGGGGCAACGAAGACTACACTTGCGGC
GGATTCGACGCCATGAACATCTTC
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