mRNA_Ecto-sp13_S_contig1363.2865.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1363.2865.1
Unique NamemRNA_Ecto-sp13_S_contig1363.2865.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1363.2865.1 vs. uniprot
Match: D8LI99_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI99_ECTSI)

HSP 1 Score: 593 bits (1528), Expect = 4.950e-209
Identity = 359/382 (93.98%), Postives = 367/382 (96.07%), Query Frame = 1 
Query:    1 QRSRYNNYNVTSQSESVLSRYSKLWHQAYKGVPAVRDWVDNNEEAQLIIQGDRGRGARGRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSA-GPHGLKVEGAGFAELDGRYYRARMADGVPCYAQRDRNELARAPEDSYGLVYRVKVDGTSAARCKWVICLIQRTLGNEGQPHADRIPFYENYGVVDNCSTPPQKGWQCVPGVLPHHDANRAPVVLIESESAMDMDDINEDDGNFDNDDASTETPAAIPSPLDDDQHPAEDMDMMVDTSNNNSPASPGGEGRGDGGGLDDDPATVVSRQPRRRDGQARSCCFRTAPLSTPSTSPTAVNRPAPPAEVRSRGRARNLSGTGPRHGRGQGSS 1143
            +RSRYNN+NVT+QSESVLSRYSKLWHQAYKGVPAVRDWVDNNEEAQLIIQGDRGRGARGRG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS+ GPHGLKVEGAGFAELDGRYYRARMADGVPCYAQRDRNELARAPEDSYGLVYRVK DGTSAAR KWVICLIQRTLGNEGQ HAD+IPFYENYGVVDNCSTPPQKGWQCVPGVL HHDANRAPVVL+ESE+AMDMDD NEDDGNFDNDDASTETPAAIPSPLDDDQHPAEDMDMMVDTSNNNSPASPGGEGRGDGGGLDDDPATVVSRQPRRRDGQ       TAPLSTPSTSPTAVNRPAPPAEVRSRGRAR+LSGTGPR GRGQGSS
Sbjct:   89 ERSRYNNFNVTNQSESVLSRYSKLWHQAYKGVPAVRDWVDNNEEAQLIIQGDRGRGARGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSVGPHGLKVEGAGFAELDGRYYRARMADGVPCYAQRDRNELARAPEDSYGLVYRVKADGTSAARRKWVICLIQRTLGNEGQSHADQIPFYENYGVVDNCSTPPQKGWQCVPGVLSHHDANRAPVVLMESENAMDMDDGNEDDGNFDNDDASTETPAAIPSPLDDDQHPAEDMDMMVDTSNNNSPASPGGEGRGDGGGLDDDPATVVSRQPRRRDGQLHDLITGTAPLSTPSTSPTAVNRPAPPAEVRSRGRARHLSGTGPRQGRGQGSS 470
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1363.2865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LI99_ECTSI4.950e-20993.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1363contigEcto-sp13_S_contig1363:613..5480 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1215
Hectar predicted targeting categoryother localisation
Exons7
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_003710.1
Cds size1215
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1363.2865.1prot_Ecto-sp13_S_contig1363.2865.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1363 613..5480 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462727.6165478-CDS-Ecto-sp13_S_contig1363:612..7321681462727.6165478-CDS-Ecto-sp13_S_contig1363:612..732Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1363 613..732 +
1681462727.63432-CDS-Ecto-sp13_S_contig1363:1164..13761681462727.63432-CDS-Ecto-sp13_S_contig1363:1164..1376Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1363 1165..1376 +
1681462727.6488547-CDS-Ecto-sp13_S_contig1363:1607..17671681462727.6488547-CDS-Ecto-sp13_S_contig1363:1607..1767Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1363 1608..1767 +
1681462727.6582444-CDS-Ecto-sp13_S_contig1363:2378..25611681462727.6582444-CDS-Ecto-sp13_S_contig1363:2378..2561Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1363 2379..2561 +
1681462727.6667235-CDS-Ecto-sp13_S_contig1363:3807..39331681462727.6667235-CDS-Ecto-sp13_S_contig1363:3807..3933Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1363 3808..3933 +
1681462727.675297-CDS-Ecto-sp13_S_contig1363:4679..48811681462727.675297-CDS-Ecto-sp13_S_contig1363:4679..4881Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1363 4680..4881 +
1681462727.6862226-CDS-Ecto-sp13_S_contig1363:5268..54801681462727.6862226-CDS-Ecto-sp13_S_contig1363:5268..5480Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1363 5269..5480 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1363.2865.1

>prot_Ecto-sp13_S_contig1363.2865.1 ID=prot_Ecto-sp13_S_contig1363.2865.1|Name=mRNA_Ecto-sp13_S_contig1363.2865.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=405bp
QRSRYNNYNVTSQSESVLSRYSKLWHQAYKGVPAVRDWVDNNEEAQLIIQ
GDRGRGARGRGGGSSGGSSSNSNNRGGGARGGSGGGGGGSGSGGVRRGAE
EDDSGDESDSSSSAGPHGLKVEGAGFAELDGRYYRARMADGVPCYAQRDR
NELARAPEDSYGLVYRVKVDGTSAARCKWVICLIQRTLGNEGQPHADRIP
FYENYGVVDNCSTPPQKGWQCVPGVLPHHDANRAPVVLIESESAMDMDDI
NEDDGNFDNDDASTETPAAIPSPLDDDQHPAEDMDMMVDTSNNNSPASPG
GEGRGDGGGLDDDPATVVSRQPRRRDGQARSCCFRTAPLSTPSTSPTAVN
RPAPPAEVRSRGRARNLSGTGPRHGRGQGSSGGGDSGGGAGGGSGSGGSS
SAAI*
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mRNA from alignment at Ecto-sp13_S_contig1363:613..5480+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1363.2865.1 ID=mRNA_Ecto-sp13_S_contig1363.2865.1|Name=mRNA_Ecto-sp13_S_contig1363.2865.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4868bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1363:613..5480+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCGATCTCGGTACAACAACTACAACGTCACCAGCCAGTCCGAGAGCGT
GCTCTCGCGCTACAGCAAGCTATGGCACCAGGCCTACAAGGGAGTCCCGG
CAGTGCGCGACTGGGTAGACGTGAGTCGTCTTTTTCTTTGGTGTGTTCAG
TTGGAAAAGTATGTACGTGTGTACGGACGAATCGCTTTGTCTCTTAAGTT
TTTTTTGTTAGGCCGCTCTTGCCCGTCGATGCCGTTCGCGGCTCGGGACA
TGCTGTGGATGCGAACATCTATCGTTACGCTTTGGAAAGTAACTACTGTC
GACGAGTCACCTCTAGTCAAGCGCGTTGTCTTGAGTTGCGAAGTTGTGCT
CAACCCTCACCGCACGGGGTTGCGTGTGTCTGTCTAAGCGGCAGGCACGC
TGTTATCCGCAACAGCTTTTGTGTTGACAGGGACTCGCAACTTGCTGTTG
TCAGGCCCCTCGTTTACCCGGCCTCGTCTTTTTCTTTTTTTTTATTGCCA
CACGTTGTTGCTTCTCATCAATTTTTTGGGTTCTCTGATTTGCCTCTGGC
AGAACAACGAAGAGGCCCAGCTCATCATCCAGGGAGACAGAGGCCGCGGA
GCGCGTGGGCGTGGCGGCGGAAGCAGCGGCGGAAGCAGCAGCAACAGCAA
CAATCGGGGTGGCGGTGCCCGGGGAGGCAGTGGCGGCGGCGGCGGCGGTA
GCGGTAGCGGCGGTGTTCGACGCGGCGCTGAAGAAGATGACTCCGGGGAC
GAAAGCGACAGCAGGTGAGCAGTGTCGACTCTGGCGACCAGCTCGCTCGG
TTCACTATCTGTTCCTTCCGGTTCACAGCTCAACGCACCTCCCGTTTGCC
GTCTAACGAGAAGGAACGCGCTTGCCCCCCCCCCTTGCCTCTTTCCTCTG
GAGGACGCGTGGTCAATGGTCTTAACCGCTGAGGCAATCAAACATGAGTA
CCCTCCCCCCCCCCACCTCCTTCTTCCCGTTCTTGTGCCCCTCAGTAGCA
GCGCAGGGCCGCACGGCCTAAAGGTGGAAGGTGCGGGCTTCGCGGAGCTG
GACGGGCGGTATTACAGGGCGAGGATGGCAGATGGCGTACCGTGTTACGC
GCAACGGGACCGAAACGAGCTTGCGAGGGCCCCGGAAGACTCGTACGGTT
TGGTGGTGAGTGTGTGAGTAGGAGAGGAGGGGTGCGTTGATGCACGCCCG
GCAGGGATATGTAGATATAGAGAATAGCGTGGTGGTTGATAGTGGTGGGG
TTTTTGTAGGCTGTTTTGGTCGCCTCGATAACGTCTAGTTTGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATCGAACTCACAACTTA
CTGGTAGGTTCACAGGTTAACACCCTAGACCATCGGAGCCTTAAAAAAGC
GGGGTTGGGTGAAATCCAACCCGTGACTGACCACGGTGACTGGGAATTTC
CACCGAACATTTTACCACATTGTGTGGACACATAGAGGCATGCTCCCGCT
TTATGAAGACCCCATGCGTTTGTGGTGGGGCGCTCCCCCCCACCCTACCC
CTGCCTGTTGCCCTTATCTGTTCCCCTCGATCGTTGCCCGCGCTCCGGCC
CTTGGTCTTTTTTTTTGCTCCTTGCGGGCTTCGCCAACACGTACTCACAT
AAGTACGCCCTCTCCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTTGCCTTTGCTTGCCGCTTTGCGCCTATCGCGCCA
TCTCGTCCCATGCCAGTACCGCGTCAAGGTGGACGGGACTTCCGCCGCCA
GGTGCAAGTGGGTGATCTGTCTCATCCAGAGGACTCTCGGCAACGAGGGG
CAGCCGCACGCCGACCGGATACCCTTCTACGAAAACTACGGCGTCGTCGA
CAACTGCAGCACGCCTCCCCAGAAGGGGTGGCAATGCGTGCCTGGGGTGG
TGAGTTTTGACACCCGCCTCGTTGGTGGCAATAAAGTAAAAACCGGGGAT
CCTCCCGGTTCTCGCAGGAAGCTGTGCCGGCCATGAATAGTTGTATAAGG
AGAGGCACTTTTGAGGTTAAATGTTACTGAAACTTTTGGTCGGGGGTGGG
GGGACATTTGCGGAAATCGACTGCAAGGATAAGCATGTCAAGTTTGTCTG
TTCGATTGGGGACGTCAAGGGGGGGCAGAAAGGGATTTTTGACGCTGGCT
CTTTTTCTCATACTGTAATCCAACACAAAGACATAAAACAACCTTCCCGC
CTGGGAACCTCGTAATTGGTACCATTATCAGTAGAGGACACAATCAAGAG
ACGTCGTGCTTGCTGGCACGTTCAGGTTTGCTACTGGAGCTGAATTATCG
AAGGTCGCGACAGCCTCTGAAAACAGTCCGAAATCTGCGCCGGAACCAAG
CGGCATCCAACATTTGTCACAGCCGTGCTCACCGCCACGGACCGTAAACC
GCTGAACGGAAGGTTATCAGCAGTAGCTAGTGGCATCAGCTACTGCTGTC
AACCCGCAGTTCAGGAGATTGGGGTCAGTGGCAGTGAGCACAAGGAAAAC
AAGACATTGGGTGTCGGTCGTATTTTCGGAGATTTGCAGAGATTGTAGGC
CAATACAACGACGCTTGATATTACCACCACAGAAGTAGATTTCAGCACGC
CAACCCGCACCTCCCGCTGCTAAAGGATGTTCTCTAGTGAAACAAGTACT
GTGCACCAGGTTCTTGGCAACGCAGAGCTTCTTTGAGCGCCTGCCGTTCA
GGCTCTTTTGACTTGGATTGAGAGCATTGCGATTTTTTTCTTGATTTCGT
AGGGGGGCGTGTGCAGATAGAGGCGTGACATGTATGTTTTGAGAAGCCTC
TACTGCCGCCCTGTGCGAGAATCAGCGAATACTGTTTGTCGCGATGCCTT
CCGACTGGTCTTGTATGTCTTGCGTGTCATTTCTGGTGCTCTTTGTCCAT
GTGTTAAAAAAATGTCAACATCAAAGTTCATGTTCTGCAATCCCTTACCA
GACTGCAGCGGTACGTAATACAACGTCGGTAAGAAGTTTTTTTTTTGCGC
GGGCTAGATGGGTAGGGGAAGAGAGCGTAAGCGGCCACCCTTTTAAAGAA
AGAAGTGCGTTGTTTTGTTTCCGTGGATGGCACAAAAAATGCCAAGAGTT
TTTTCTCCCTCTTCGTTTGTCGAATTTTGTCGCCGGTGTGCCCAGCTGCC
ACACCACGATGCGAACCGCGCGCCGGTGGTGCTGATCGAGAGCGAGAGCG
CGATGGACATGGACGACATCAACGAGGACGATGGAAACTTCGACAACGAT
GATGCCAGCACCGAAACCCCGGTGAGATTTTGTTGTATATTTTCTCTCTC
TCTCTCTCTCTTTTAGTGCAAACCAGGAGGTTTGTGTCTTCCTAGGGGTG
ATGATGCACATGCGACCGGCAAGATGGTCGGACTACCTGAAGCATGCTCT
ATCGTCCGAAGACATTTTGCCAGGAACGATTCAGAGAACACCGTGACTAT
TCGTGTGACTCTCGGAGATGCGGAGATGGCGGCGAATGCGCCCCACGCTC
CTGACTCTCACACCTTCCACACTATCGGCTACACTTGGCACTTCCTCGCC
CATTGCAAGAAAAGCGAAATACGTCCGTTGGTGAACGGTTATTCACCGCT
TCAGGGACCCTTGGTCGCAACAGAGAAAGGGTATTCTCCTTCTTTCTGTT
GTTTTTCCGGGTGCTTGCGTGAGTTCTGCAAGCGGTAGAGGTCCTTGGTG
AAGAGATGGCGACATCCTCTTACGCATCATCAAGACCGCACGAAACAAGA
AACGAGCTTCTCTAGATCTTGCAATTGCACGCGAAAGTTTGGCATCCACA
CCTTTTGTCATTCCCAACACACCCTAAGAAGTTGTATCGGTAGGGGTGAG
AGTGATAGCTTGTCGCAACCCCTGTTCGACATGCAACTCTCTTGCTGAAG
GCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCGCGACTTGACCCCGTGGGTGAACCGAACCCACCG
ACTGCGATACCCATCAGGCGGCCATCCCGTCCCCGCTGGATGATGATCAG
CACCCGGCGGAAGACATGGACATGATGGTAGACACTTCCAACAACAACTC
TCCGGCCAGCCCCGGGGGAGAGGGGAGGGGAGACGGCGGCGGTCTCGACG
ACGACCCGGCCACCGTGGTGTCGCGGCAGCCACGAAGGCGTGATGGACAG
GCGAGGAGTTGCTGTTTTCGTCGTCATGGTCGTTGTCGTTATTGTCGTCG
CTGTTGGGCGGAAGTAGCGGCGGCACAGCGGTAATTTTCAAGGCACCGGG
GTAAGCCTCGGATCGGATCCCTGTCTGTGTGTTAATTCCCCTCTCTCTCT
TTGGTTGGTAGTTATTCTCGTCCAAACCCAGCGGCTGCTTGCTGTCTCTT
CTCTTGTTGTCGGCTGTCTTGGTTGCGATGGAAACAAAGGTGTGACTTTA
TCCAGTTTTTTCACCACCCCCGCCCGATCCCCCCCCCCCCCCCCGGTTCT
AATTACTAGCACTACCACCACCAATGTCTCATGATCGTCTAGTCATTCCC
TACCCCCCCCCCCCTTCCCCCTCTGTCTTTCCTGCAGCTGCATGACTTGA
TTACAGGGACGGCCCCCCTCTCCACCCCGAGCACGAGCCCCACCGCGGTA
AACCGCCCCGCTCCGCCCGCCGAGGTCCGCTCGAGAGGGAGAGCCAGGAA
CCTGTCCGGCACGGGGCCCCGGCATGGACGGGGTCAGGGAAGCAGCGGCG
GCGGCGACAGCGGTGGCGGTGCAGGTGGTGGTAGCGGCAGCGGAGGCTCG
TCGTCGGCAGCAATTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1363:613..5480+

>mRNA_Ecto-sp13_S_contig1363.2865.1 ID=mRNA_Ecto-sp13_S_contig1363.2865.1|Name=mRNA_Ecto-sp13_S_contig1363.2865.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1215bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1363:613..5480+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCGATCTCGGTACAACAACTACAACGTCACCAGCCAGTCCGAGAGCGT
GCTCTCGCGCTACAGCAAGCTATGGCACCAGGCCTACAAGGGAGTCCCGG
CAGTGCGCGACTGGGTAGACAACAACGAAGAGGCCCAGCTCATCATCCAG
GGAGACAGAGGCCGCGGAGCGCGTGGGCGTGGCGGCGGAAGCAGCGGCGG
AAGCAGCAGCAACAGCAACAATCGGGGTGGCGGTGCCCGGGGAGGCAGTG
GCGGCGGCGGCGGCGGTAGCGGTAGCGGCGGTGTTCGACGCGGCGCTGAA
GAAGATGACTCCGGGGACGAAAGCGACAGCAGTAGCAGCGCAGGGCCGCA
CGGCCTAAAGGTGGAAGGTGCGGGCTTCGCGGAGCTGGACGGGCGGTATT
ACAGGGCGAGGATGGCAGATGGCGTACCGTGTTACGCGCAACGGGACCGA
AACGAGCTTGCGAGGGCCCCGGAAGACTCGTACGGTTTGGTGTACCGCGT
CAAGGTGGACGGGACTTCCGCCGCCAGGTGCAAGTGGGTGATCTGTCTCA
TCCAGAGGACTCTCGGCAACGAGGGGCAGCCGCACGCCGACCGGATACCC
TTCTACGAAAACTACGGCGTCGTCGACAACTGCAGCACGCCTCCCCAGAA
GGGGTGGCAATGCGTGCCTGGGGTGCTGCCACACCACGATGCGAACCGCG
CGCCGGTGGTGCTGATCGAGAGCGAGAGCGCGATGGACATGGACGACATC
AACGAGGACGATGGAAACTTCGACAACGATGATGCCAGCACCGAAACCCC
GGCGGCCATCCCGTCCCCGCTGGATGATGATCAGCACCCGGCGGAAGACA
TGGACATGATGGTAGACACTTCCAACAACAACTCTCCGGCCAGCCCCGGG
GGAGAGGGGAGGGGAGACGGCGGCGGTCTCGACGACGACCCGGCCACCGT
GGTGTCGCGGCAGCCACGAAGGCGTGATGGACAGGCGAGGAGTTGCTGTT
TTCGGACGGCCCCCCTCTCCACCCCGAGCACGAGCCCCACCGCGGTAAAC
CGCCCCGCTCCGCCCGCCGAGGTCCGCTCGAGAGGGAGAGCCAGGAACCT
GTCCGGCACGGGGCCCCGGCATGGACGGGGTCAGGGAAGCAGCGGCGGCG
GCGACAGCGGTGGCGGTGCAGGTGGTGGTAGCGGCAGCGGAGGCTCGTCG
TCGGCAGCAATTTGA
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