mRNA_Ecto-sp13_S_contig13625.2864.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13625.2864.1
Unique NamemRNA_Ecto-sp13_S_contig13625.2864.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13625.2864.1 vs. uniprot
Match: A0A6T5NUG8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5NUG8_HETAK)

HSP 1 Score: 66.2 bits (160), Expect = 1.950e-10
Identity = 46/126 (36.51%), Postives = 68/126 (53.97%), Query Frame = 1 
Query:    1 EKGETRVMGLGVGVFLIFFFSMVAAVVCLVGATTPRPGTFACGGAGLLGFVTFILLVAEQDSRYVEDKSDQIQDFDQTFYPRLIAVLFMALAGLLGLGALCVMHIGKPVHATPVYDQRSDLRRPIF 378
            E   TRV+G+G+GVFLI FF  +A ++ +VGA   + G F   G G+   V  IL  A++ S+YV  + + +QD+   FYPR++    +  AG L   A  V  + + VH T V D     R+  F
Sbjct:   12 EAEPTRVLGVGIGVFLIAFFFALALLLSVVGAALGKKGIFFGIGTGIFLLVCAILFGADRGSQYVIVE-ETVQDYSALFYPRVVFAAILG-AGALMAAAPAVQMLTEQVH-TEVMDDLETRRKRHF 134
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BLAST of mRNA_Ecto-sp13_S_contig13625.2864.1 vs. uniprot
Match: A0A2J8A4F0_9CHLO (Transmembrane protein 218 n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8A4F0_9CHLO)

HSP 1 Score: 61.2 bits (147), Expect = 2.320e-8
Identity = 34/110 (30.91%), Postives = 58/110 (52.73%), Query Frame = 1 
Query:   13 TRVMGLGVGVFLIFFFSMVAAVVCLVGATTPRPGTFACGGAGLLGFVTFILLVAEQDSRYVEDKSDQIQDFDQTFYPRLIAVLFMALAGLLGLGALCVMHIGKPVHATPV 342
            TRV+G+G+GVFL+FFF  ++ VVCLVG+ T            + G +  +L+ + +  + V+      + +D T  P +I    + +  LLG   + V H+   V+A P+
Sbjct:   42 TRVVGVGLGVFLVFFFLALSLVVCLVGSRTKYRWAIYMASTAMFGIIALVLIASPKGEKPVKPP----EGYDLTIIPVVIITAVVCIGVLLGAVGMLVFHVLPTVYARPL 147
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BLAST of mRNA_Ecto-sp13_S_contig13625.2864.1 vs. uniprot
Match: A0A8J2SSJ6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SSJ6_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.330e-6
Identity = 38/130 (29.23%), Postives = 64/130 (49.23%), Query Frame = 1 
Query:    1 EKGETRVMGLGVGVFLIFFFSMVAAVVCLVGATTP--RPGTFACGGAGLLGF--VTFILLVAEQDSRYVEDKSDQIQDFDQTFYPRLIAVLFMALAGLLGLGALCVMHIGKPVHATPVYDQRSDLRRPIF 378
              G+ RV+G+G+GVFL+ FF +    +C  GA  P  R   +     G LGF  V  +L +A++   Y  ++  + ++ D      ++    +A A   GLGA+   H+  PV A  V  + +  R+ +F
Sbjct:   44 RAGKERVLGVGLGVFLLSFFFIAMCALCWAGALLPQERGEQWIFNVVGTLGFGVVACVLFLADERPEYASEERAE-REHDDNLIGLIVVAGLLACAAAFGLGAVLCYHVCAPVEAPLVQKRPAGDRQGLF 172
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BLAST of mRNA_Ecto-sp13_S_contig13625.2864.1 vs. uniprot
Match: D8TRS0_VOLCA (Transmembrane protein 218 n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TRS0_VOLCA)

HSP 1 Score: 55.1 bits (131), Expect = 2.010e-6
Identity = 29/109 (26.61%), Postives = 59/109 (54.13%), Query Frame = 1 
Query:   16 RVMGLGVGVFLIFFFSMVAAVVCLVGATTPRPGTFACGGAGLLGFVTFILLVAEQDSRYVEDKSDQIQDFDQTFYPRLIAVLFMALAGLLGLGALCVMHIGKPVHATPV 342
            RV G+GVGVFL+FFF  ++ ++CL+G+ +          A + G V  +LL + +  +    ++   + +DQT  P ++ ++ +A+  L+    + +  +   V+A P+
Sbjct:    4 RVAGVGVGVFLLFFFLALSVLICLLGSRSKLRWIVFTASAAMFGIVALVLLASPKGPK----RTKPPEGYDQTIVPLVVVMVILAIGVLMSAVGMLIFALLPTVYARPL 108
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13625.2864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6T5NUG8_HETAK1.950e-1036.51Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A2J8A4F0_9CHLO2.320e-830.91Transmembrane protein 218 n=1 Tax=Tetrabaena socia... [more]
A0A8J2SSJ6_9STRA1.330e-629.23Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
D8TRS0_VOLCA2.010e-626.61Transmembrane protein 218 n=1 Tax=Volvox carteri f... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13625contigEcto-sp13_S_contig13625:1..2761 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size632
Hectar predicted targeting categorysignal peptide
Exons4
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-06_008840.1
Cds size360
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13625.2864.1prot_Ecto-sp13_S_contig13625.2864.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13625 22..2510 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462727.528928-UTR-Ecto-sp13_S_contig13625:0..211681462727.528928-UTR-Ecto-sp13_S_contig13625:0..21Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13625 1..21 +
1681462727.586112-UTR-Ecto-sp13_S_contig13625:2510..27611681462727.586112-UTR-Ecto-sp13_S_contig13625:2510..2761Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13625 2511..2761 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462727.5387692-CDS-Ecto-sp13_S_contig13625:21..1131681462727.5387692-CDS-Ecto-sp13_S_contig13625:21..113Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13625 22..113 +
1681462727.5549722-CDS-Ecto-sp13_S_contig13625:1397..15031681462727.5549722-CDS-Ecto-sp13_S_contig13625:1397..1503Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13625 1398..1503 +
1681462727.5661113-CDS-Ecto-sp13_S_contig13625:2017..21281681462727.5661113-CDS-Ecto-sp13_S_contig13625:2017..2128Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13625 2018..2128 +
1681462727.576343-CDS-Ecto-sp13_S_contig13625:2459..25101681462727.576343-CDS-Ecto-sp13_S_contig13625:2459..2510Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13625 2460..2510 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13625.2864.1

>prot_Ecto-sp13_S_contig13625.2864.1 ID=prot_Ecto-sp13_S_contig13625.2864.1|Name=mRNA_Ecto-sp13_S_contig13625.2864.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=120bp
MGLGVGVFLIFFFSMVAAVVCLVGATTPRPGTFACGGAGLLGFVTFILLV
AEQDSRYVEDKSDQIQDFDQTFYPRLIAVLFMALAGLLGLGALCVMHIGK
PVHATPVYDQRSDLRRPIF*
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mRNA from alignment at Ecto-sp13_S_contig13625:1..2761+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13625.2864.1 ID=mRNA_Ecto-sp13_S_contig13625.2864.1|Name=mRNA_Ecto-sp13_S_contig13625.2864.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2761bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13625:1..2761+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGAAAGGGGAGACTCGAGTCATGGGCCTCGGCGTCGGGGTTTTTCTCAT
ATTCTTTTTCTCAATGGTCGCGGCTGTCGTCTGCCTGGTGGGTGCAACGA
CTCCAAGGCCTGGGTAAGAGCAAGCTTAGGCTTTGGTGGCGCTAATATTC
AACTGTCTGTTGACGACAGAACCTGATCGACGGGGATGTCCATGGTTCGC
TCGTGTTTGACCTGTTGCCAACTGGCCATCTAGTCATCAGCCACCGTGGC
CTAACGTCCATTCTTCCTTATGCTTGAGAAATCTGCGTGGACTCCACATG
CTAATGTTTTCAGGGTTAGTTTTTAATCCGTAATCCGATTCATTACCGCT
CAATTTCTGCCCTGAAAGTGATCTTGCCTCTCCGGCTGAGGACTCCCATC
AGAGGTTACACGATGACAATCCTCCGCGATGCAGTACGTTCGAAAACGCC
ATTGAGAACCGAAACAGAGAAGAGATTATTACCGAAAGCTCGTTTCGATG
CAGATATGCCTCGGGTGGGGAACATGTGGTGCTACAGTTGCAAGTTCAGT
AGATTACATAGAATTCTGTTGCTTGCTGTCCTGGTATGTATCGTCTATGC
TACGTGGGATGGGGTAATCTTCTGACATCTATTTTGCATATTTTCGTTAG
CCCAAGAGAAGGGGTTTTATACCGCGAAGGGGTGCAGAGTAGTATTTTAT
GCACCATACGACGTTTCTCTAAAACCTCCACCAACATGCTTTCGAACAAC
GCTGTGCGTCAGGAATAGTACAGAGTTCTCTTCGAGAAAATCCCAGTAAC
CCTCTCGGCGTCTTTCGGCACCCCGACCACATCAGATAAAGACTGAAAAA
TATTTTGAGTTTAATCTTTGTTTGTTTGTTAACGTCGCCAAGAAAGGTGC
GACTTAGGACCGTGGTTAGGATTAACCCTCGAACAAATTGTGAAAAATAT
TTAGTTCTGCCACGTTTTTCGGCGAGATCCACGAATTGCACCCCGCCGGA
AAATGAACCCATCTTCGGCCCTGCTACAGCTATCATACAATCAGCGTAGG
TTACGTGGAGACACGCCTCTCGATGACAACTTCATTTCAATCAAGATGGG
ACGTGTGGTGGTCTTCTGTACATTCGTGCGCGAGGAGGCACACTGTCAGA
GTGGCCGAAGAAGAAAAGACGTTTGGAGACGGCTGTTCTTTGACCTAGAC
CACGGTGGAAAATGGCTTTGGCGAGAGCGCATCCCTTCTCGACGTGCTAC
ATAAGTGCATTCTCCATCATGACATTATTGCGATGTGTACGTACACCGCT
AGAGCATCAGTATCGCAGCAAGTGAGCGTGACTCGTTTTCATCTTGCGTT
TCCCGTGCTCGCTGGCTGTCTTTCTCTCCTGGGCGGTTGGATCCAAGGAC
GTTCGCGTGCGGCGGGGCGGGGCTGCTAGGGTTTGTGACGTTTATTCTTC
TCGTCGCTGAACAGGACTCCAGATACGTCGAAGACAAGAGCGACCAGATA
CAGGTGATATTTCTAACCAACAGGCACCCTGTTACGGAGTCTGCTATGGT
TCGGTGACTAGTGGGGGTACATTCAACGGATTTGCGCTGAAAAGTCTTTG
CAGCTGTCGGCGTTGGCGTGGTTGCATTCGTCTTGTTCCCGCTCGACACT
CTGCCACATGCGTGCTGCTCACGATGAGCTTATAGGGAGTTAAGCACTAA
CGACGCAGCATCGCCTTCGTGAACCGTGATACTTTGGCAACAGTGCGCCC
GTGCCCTACGCCAACAAGCGAAAAATTGCGATCGCTTGAAGCCATCACGG
CTTCACATGTGGAATTTAGGTGCTAACTTCTCCTCAATCATCTTACGCAC
GAGCCCGGCACCTGGTTTCGTAGATCCCCGCACCTCACACGCGGTGCACA
ACAGCGGAGAGGCAAAGTATTTTGAGTCGACCCACAGGCACATGCTGTCA
GTCTCATAGCTATAACTGCAGCTAACCCTCGAACGGTGTTGTCACGAATG
CCGATCTCGCGCGGCAGGACTTCGACCAGACGTTCTACCCGAGATTGATA
GCGGTCCTCTTCATGGCACTGGCGGGGCTGCTTGGCTTGGGAGCACTGTG
TGTTATGCACATTGGAAAGCCTGTTCATGTGAGTGCAACAGCGTTCGAGT
CTGGTAGAGCCAAGAAGGCAGTGGTTGTTGCCGCTGACAACCCTCGCGAG
AGCCATCTTCCTTGAAAAATTGGTGCTGTGACCGTTGGCGATTCTTTCGG
CATGCTCTTCGACCAACCTCACACTCGCGCAAGTACACAACCTCAGAGTC
TTTCCACTCAAAAACATTCACATGTGAGGAAGACTTGATCGCGCTTTTCC
TGAATTTCACACCGGCCTTACCACTCCCACCCCTCCCCACTGATCCCCCC
CCCCCCGCGTGTGTGCGTTGTCACTTCCAAAAAAATCGGTTACACCCCGA
TACCAACAGGCGACCCCGGTGTATGATCAGCGAAGTGACTTGCGGAGGCC
CATATTCTGACGTTGGTTGGATACGCGATTATCTTCCTCCGGGGAATCAT
ATATTTTTGTAGGCAACCAACGTGGAGCTTGGGGCCCCAATTATGTGTTG
TGCGATAACATCTCGAGAGCTCTGGGGAGCGACCTCGGCTGCTACAGTAA
CCTTGAACGGGTGGGCTTCCGCTGAAAGATTGGAAGCGGTTGCACACAGT
CACGGTGCCCTCCCTGCTGCACAAGGATGCAACTTAGTGCCGCGCAAACC
TTAAGCTATGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13625:1..2761+

>mRNA_Ecto-sp13_S_contig13625.2864.1 ID=mRNA_Ecto-sp13_S_contig13625.2864.1|Name=mRNA_Ecto-sp13_S_contig13625.2864.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=360bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13625:1..2761+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCCTCGGCGTCGGGGTTTTTCTCATATTCTTTTTCTCAATGGTCGC
GGCTGTCGTCTGCCTGGTGGGTGCAACGACTCCAAGGCCTGGGACGTTCG
CGTGCGGCGGGGCGGGGCTGCTAGGGTTTGTGACGTTTATTCTTCTCGTC
GCTGAACAGGACTCCAGATACGTCGAAGACAAGAGCGACCAGATACAGGA
CTTCGACCAGACGTTCTACCCGAGATTGATAGCGGTCCTCTTCATGGCAC
TGGCGGGGCTGCTTGGCTTGGGAGCACTGTGTGTTATGCACATTGGAAAG
CCTGTTCATGCGACCCCGGTGTATGATCAGCGAAGTGACTTGCGGAGGCC
CATATTCTGA
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