prot_Ecto-sp13_S_contig1362.2861.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig1362.2861.1
Unique Name	prot_Ecto-sp13_S_contig1362.2861.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	914

Homology

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BLAST of mRNA_Ecto-sp13_S_contig1362.2861.1 vs. uniprot
Match: A0A6H5KH38_9PHAE (UBX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH38_9PHAE)

HSP 1 Score: 917 bits (2371), Expect = 0.000e+0
Identity = 681/1084 (62.82%), Postives = 694/1084 (64.02%), Query Frame = 0

Query:  125 SGALRLSGSSVGGGRASE--AXXXXXXXXXXXAIATAALGANAEHASGPSVPSLHATEAEHRQRVFEKQRELEAKQKKQERGEAKRXXXXXLAIWXXXXXXXXXXKSGGGGKGAAVQTSPGEGKAGGGDADRADQGKGGASSGAPAE---------------------------------------LRGKELQLRCPFPPPGRAIAGDELDSSTVESVGLFPRGRLMVQFSDGVTIKKGEGAMPSADNDQAGG----------------------------------------------------------------------------------------------------------------GGDGXXXXXXXXXXXXXXXXXXXXXXXXXXPAA----------------------------------------------------------------------------------------------------------------------------------------------RKSRVEVGTLQDILVDNICQRIRGGGQHQAISYGGLDAATGTRILQRLADLRALTPAMLSAFRGCPVAELSLDRNPRVTNALLAELGRKVSIMSLSLAHNDAMTLEGIESLAGLRALASLDIGGCKVTNGWLKVIAKLHALETLVLRGCTKVADLGILGLARGARSLTCLXXXXXXXXXXXXVAHLSPMVVGGKLECLRLDGLVGLSDDGLDALLLGDGDSPEAAAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPAGAEEQAPASSSLRVLSLSRCPGVADEGLARLGASRPLRASLRELDVSGTSTTESGLLRLLDPSAXXXXXXXXXXXXXXXXXXXXGRRRPAPLRLESLVLQHGGGGITGVGLSALVGLTSLTRLDLEGCRGPGVTSQALAGLARLVRLQWLSVTAVPAFDDDALTAVCSSCNALRVLNLSSTSVARAADLGLLGSAMIDLSLAHTNIDDDTMDAVASLPRLTTLTLRGTAVTGAGVARLSGLRGLRSLVLTGTRAAQEGGAGGGASSAVEGLRARTAALNIRL 913
            +GA RL  SSV GG  SE  +   XXXXXXXX +ATAALGA AEHA GPSVPSLHATEAEHRQRVFEKQRELEAKQKKQERGE+  XXXX LAIW   XXXXXXX  G  GKG AVQTSPGEGKA GGDADRADQG+GGA  G  AE                                       LR KELQLRCPFPPPGRAIAGDELDSSTVESVGLFPRGRLMVQFSDG TIKKGEGAMPSADNDQAG                                                                                                                 GG+G           XXXXXXXXXXXXXXX                                                                                                                                                 R +       QDILVDNICQRIRG GQHQA+SYGGLD ATGTRILQRLA+LRALTPAMLSAFRGCPVAELSLDRNPRVTNALLAELGRKVSIMSLSLAHNDAMTLEGIESLAGLRALASLDI GCKVTNGWLKVIAKL ALETLVLRGCTKVADLGILGLARGA      XXXXXXXXXXXX AHLS MVVGGKLECLRLDGLVGLSDDGLDALLLGDGD  EAAA AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   G EE+APASSSLRVLSLSRCPGVAD+GLARLGASRPLRASLRELDVSGTSTTESGLLRLLDPS+                    GRRRPAPLRLESLVLQHGGGGITGVGLSALVGLTSLTRLDLEGCRGPGVTSQALAGLARLVRLQWLSV AVPAFDDDALTAVCSSCNALRVLNL STSVARAA LGLLGSA+IDLSLAHTNIDDDTMDAVASLPRLTTLTLRGTAVTGAGVARLSGLRGLRSLVLTGTRAAQEGGAGGGASSAVEGLRARTAALNIRL
Sbjct:    5 TGAFRLGSSSVRGGHVSEVTSPAAXXXXXXXXXVATAALGATAEHAPGPSVPSLHATEAEHRQRVFEKQRELEAKQKKQERGESXXXXXXELAIWKEQXXXXXXXXGGXXGKGPAVQTSPGEGKARGGDADRADQGRGGACLGGQAEAMVVMRLPDGTSTTHSFGTAATLREVLTWLQSTEPTAGKLRSKELQLRCPFPPPGRAIAGDELDSSTVESVGLFPRGRLMVQFSDGATIKKGEGAMPSADNDQAGATRXXXXXXXXRFGGWGFPQGPGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAAWGGEGAHPFGEAGVDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRXXXXXXXXXXGTVAGAXXXXXXXXLPRGSRGWRWAHCRCQREQDILVDNICQRIRGSGQHQAVSYGGLDGATGTRILQRLANLRALTPAMLSAFRGCPVAELSLDRNPRVTNALLAELGRKVSIMSLSLAHNDAMTLEGIESLAGLRALASLDISGCKVTNGWLKVIAKLPALETLVLRGCTKVADLGILGLARGAXXXXXXXXXXXXXXXXXXXAHLSSMVVGGKLECLRLDGLVGLSDDGLDALLLGDGDGLEAAAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--GTEEEAPASSSLRVLSLSRCPGVADQGLARLGASRPLRASLRELDVSGTSTTESGLLRLLDPSSTAAASGEAGVCGAVV-----GRRRPAPLRLESLVLQHGGGGITGVGLSALVGLTSLTRLDLEGCRGPGVTSQALAGLARLVRLQWLSVAAVPAFDDDALTAVCSSCNALRVLNLGSTSVARAAGLGLLGSAVIDLSLAHTNIDDDTMDAVASLPRLTTLTLRGTAVTGAGVARLSGLRGLRSLVLTGTRAAQEGGAGGGASSAVEGLRARTAALNIRL 1081

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BLAST of mRNA_Ecto-sp13_S_contig1362.2861.1 vs. uniprot
Match: D8LSQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSQ0_ECTSI)

HSP 1 Score: 691 bits (1783), Expect = 2.460e-240
Identity = 433/530 (81.70%), Postives = 440/530 (83.02%), Query Frame = 0

Query:  384 VDNICQRIRGGGQHQAISYGGLDAATGTRILQRLADLRALTPAMLSAFRGCPVAELSLDRNPRVTNALLAELGRKVSIMSLSLAHNDAMTLEGIESLAGLRALASLDIGGCKVTNGWLKVIAKLHALETLVLRGCTKVADLGILGLARGARSLTCLXXXXXXXXXXXXVAHLSPMVVGGKLECLRLDGLVGLSDDGLDALLLGDGDSPEAAAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPAGAEEQAPASSSLRVLSLSRCPGVADEGLARLGASRPLRASLRELDVSGTSTTESGLLRLLDPSAXXXXXXXXXXXXXXXXXXXXGRRRPAPLRLESLVLQHGGGGITGVGLSALVGLTSLTRLDLEGCRGPGVTSQALAGLARLVRLQWLSVTAVPAFDDDALTAVCSSCNALRVLNLSSTSVARAADLGLLGSAMIDLSLAHTNIDDDTMDAVASLPRLTTLTLRGTAVTGAGVARLSGLRGLRSLVLTGTRAAQEGGAGGGASSAVEGLRARTAALNIRL 913
            +DNICQRIRGGGQHQA+SYGGLDAATGTRILQRLADLRALTPAMLSAFRGCPVAELSLDRNPRVTNALLAELGRKVSIMSLSLAHNDAMTLEGIESLAGLRALASLDI GCKVTNGWLKVIAKL ALETL+LRGCTKVADLGILGL+RGA      XXXXXXXXXXXX AHLS MVVGGKLECLRLDGLVGLSDDGLDALLLGDGD                                                               G+   GLARLGASRPLRASLRELDVSGTS TESGL+RLLDPSAXXXXXXXXXXXXXXXXXXXX       LRLESLVLQHGGGGIT VGLSALVGLTSLTR+DLEGCRGPGVTSQALAGLARLVRLQWLSV AVPAFDDDALTAVCSSCNALRVLNL STSVARAA L LLGSAMIDLSLAHTNIDDDTMDAVASLPRLTTLTLRGTAVTGAGVARLSGLRGLRSLVLTGTRAAQEGGAGGGASSAVE LRARTAALNIRL
Sbjct:    1 MDNICQRIRGGGQHQAVSYGGLDAATGTRILQRLADLRALTPAMLSAFRGCPVAELSLDRNPRVTNALLAELGRKVSIMSLSLAHNDAMTLEGIESLAGLRALASLDISGCKVTNGWLKVIAKLPALETLLLRGCTKVADLGILGLSRGAXXXXXXXXXXXXXXXXXXXAHLSSMVVGGKLECLRLDGLVGLSDDGLDALLLGDGD---------------------------------------------------------------GLG--GLARLGASRPLRASLRELDVSGTSATESGLVRLLDPSAXXXXXXXXXXXXXXXXXXXX--XXXXXLRLESLVLQHGGGGITSVGLSALVGLTSLTRMDLEGCRGPGVTSQALAGLARLVRLQWLSVAAVPAFDDDALTAVCSSCNALRVLNLGSTSVARAAGLALLGSAMIDLSLAHTNIDDDTMDAVASLPRLTTLTLRGTAVTGAGVARLSGLRGLRSLVLTGTRAAQEGGAGGGASSAVERLRARTAALNIRL 463

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig1362.2861.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig1362.2861.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5KH38_9PHAE	0.000e+0	62.82	UBX domain-containing protein n=1 Tax=Ectocarpus s...	[more]
D8LSQ0_ECTSI	2.460e-240	81.70	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 207..227
None	No IPR available	PANTHER	PTHR13382	MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B	coord: 564..811 coord: 429..582
None	No IPR available	PANTHER	PTHR13382:SF6	SCF E3 UBIQUITIN LIGASE COMPLEX F-BOX PROTEIN GRR1	coord: 564..811
None	No IPR available	PANTHER	PTHR13382:SF6	SCF E3 UBIQUITIN LIGASE COMPLEX F-BOX PROTEIN GRR1	coord: 429..582
None	No IPR available	SUPERFAMILY	52058	L domain-like	coord: 438..883
IPR006553	Leucine-rich repeat, cysteine-containing subtype	SMART	SM00367	LRR_CC_2	coord: 458..483 e-value: 210.0 score: 4.2 coord: 748..775 e-value: 5.2 score: 16.0 coord: 848..872 e-value: 440.0 score: 1.7 coord: 533..558 e-value: 2.3 score: 17.2 coord: 507..532 e-value: 2.3 score: 17.2 coord: 640..665 e-value: 2.4 score: 17.1
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10		coord: 424..592 e-value: 2.2E-21 score: 78.1 coord: 717..888 e-value: 1.1E-20 score: 75.8
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10		coord: 630..693 e-value: 5.2E-7 score: 31.2
IPR001611	Leucine-rich repeat	PFAM	PF13516	LRR_6	coord: 534..556 e-value: 0.061 score: 13.4 coord: 640..661 e-value: 1.2 score: 9.4

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig1362	contig	Ecto-sp13_S_contig1362:2315..11964 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig1362.2861.1	mRNA_Ecto-sp13_S_contig1362.2861.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig1362 620..13038 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig1362.2861.1 ID=prot_Ecto-sp13_S_contig1362.2861.1|Name=mRNA_Ecto-sp13_S_contig1362.2861.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=914bp
MRSPFFHRPCHVRLAQGLLLLWEERMHQDHAPVVTIQSRFPRCFLHTKAC
VSVSHAGKSNAQRHAAEVAALSANGNAERAFALILSWDGAPPPPLPSRQA
PLPGGGNSPSAAAAAADSADGRGISGALRLSGSSVGGGRASEAASPAAGG
SGGGAIATAALGANAEHASGPSVPSLHATEAEHRQRVFEKQRELEAKQKK
QERGEAKRRREQELAIWKEQREEAKQRKSGGGGKGAAVQTSPGEGKAGGG
DADRADQGKGGASSGAPAELRGKELQLRCPFPPPGRAIAGDELDSSTVES
VGLFPRGRLMVQFSDGVTIKKGEGAMPSADNDQAGGGGDGGGGPDGGGGN
DGGGGHRGGGGSGGGGPAARKSRVEVGTLQDILVDNICQRIRGGGQHQAI
SYGGLDAATGTRILQRLADLRALTPAMLSAFRGCPVAELSLDRNPRVTNA
LLAELGRKVSIMSLSLAHNDAMTLEGIESLAGLRALASLDIGGCKVTNGW
LKVIAKLHALETLVLRGCTKVADLGILGLARGARSLTCLDLAGCTGVTDA
GVAHLSPMVVGGKLECLRLDGLVGLSDDGLDALLLGDGDSPEAAAVAAAP
AASAARAAAARAAAARASWSSSDSGGGASPAGAEEQAPASSSLRVLSLSR
CPGVADEGLARLGASRPLRASLRELDVSGTSTTESGLLRLLDPSAAAAAA
AAAASGEAGGGGAVVGRRRPAPLRLESLVLQHGGGGITGVGLSALVGLTS
LTRLDLEGCRGPGVTSQALAGLARLVRLQWLSVTAVPAFDDDALTAVCSS
CNALRVLNLSSTSVARAADLGLLGSAMIDLSLAHTNIDDDTMDAVASLPR
LTTLTLRGTAVTGAGVARLSGLRGLRSLVLTGTRAAQEGGAGGGASSAVE
GLRARTAALNIRL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006553	Leu-rich_rpt_Cys-con_subtyp
IPR032675	LRR_dom_sf
IPR001611	Leu-rich_rpt