mRNA_Ecto-sp13_S_contig10277.286.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10277.286.1
Unique NamemRNA_Ecto-sp13_S_contig10277.286.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10277.286.1 vs. uniprot
Match: D8LJ62_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ62_ECTSI)

HSP 1 Score: 621 bits (1602), Expect = 1.020e-219
Identity = 304/316 (96.20%), Postives = 311/316 (98.42%), Query Frame = 1
Query:    1 QDLRLYTVSSVDDATVCNDEKLASGSTAAYVSSAELFLQDTIFRENKPWPSVIWAPSNMIDSDEAPNLQISVLMDALPSSWRGTLVMLDQLYGYGYGWNTGNPTLATLSGVKPVNEFSPATRDSGLERMERYRQRDPRVTFMSAFPMYQGRLFENEESRIGERCYGCSIHYHYVSDDPNSPDAYGGAKMVHSAVTEMLANVLISKAVGTKAALRERTGTQSSDVTSTAEERKAHTSTFELCTDCPASLIPLHVKPSPLLKCDTVSTLPGNATVGKAWDDERCPDWCMAREPDRQASKGTGLVDVRVCETSSTGEDH 948
            QDLRLYTVSSVDDATVCNDEKLASGSTAAYVSSAELFLQDTIFRENKPWPSVIWAPSNMIDSDEAPNLQISVLMDALPSSWRGTLVMLDQLYGYGYGWNTGNPTLATLSGVKPVNEFSPATRDSGLERMERYRQRDPRVTFMSAFPMYQGRLFENEESRIGERCYGCSIHYHYVSDDPNSP+AYGGAKMVHSAVTEMLANVLI++AVGTKAALRER GT SSDVTSTAEER+A T TFELCTDCPA+LIPLHVKPSPLLKCDTVS LPGNATVGKAWDDERCPDWCMAREPDRQASKGTGLVDVRVCET+STG+DH
Sbjct:  318 QDLRLYTVSSVDDATVCNDEKLASGSTAAYVSSAELFLQDTIFRENKPWPSVIWAPSNMIDSDEAPNLQISVLMDALPSSWRGTLVMLDQLYGYGYGWNTGNPTLATLSGVKPVNEFSPATRDSGLERMERYRQRDPRVTFMSAFPMYQGRLFENEESRIGERCYGCSIHYHYVSDDPNSPEAYGGAKMVHSAVTEMLANVLITRAVGTKAALRERAGTHSSDVTSTAEERQADTRTFELCTDCPATLIPLHVKPSPLLKCDTVSALPGNATVGKAWDDERCPDWCMAREPDRQASKGTGLVDVRVCETTSTGKDH 633          
BLAST of mRNA_Ecto-sp13_S_contig10277.286.1 vs. uniprot
Match: D7FXE0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE0_ECTSI)

HSP 1 Score: 295 bits (754), Expect = 1.150e-92
Identity = 148/307 (48.21%), Postives = 196/307 (63.84%), Query Frame = 1
Query:    1 QDLRLYTVSSVDDATVCNDEKLASGSTAAYVSSAELFLQDTIFRENKPWPSVIWAPSNMIDSDEAPNLQISVLMDALPSSWRGTLVMLDQLYGYGYGWNTGNPTLATLSGVKPVNEFSPATRDSGLERMERYRQRDPRVTFMSAFPMYQGRLFENEESRIGERCYGCSIHYHYVSDDPNSPDAYGGAKMVHSAVTEMLANVLISKAVGTKAALRERTGTQSSDVTSTAEERKAHTSTFELCTDCPASLIPLHVKPSPLLKCDTVSTLPGNATVGKAWDDERCPDWCMAREPDRQASKGTGLVDVRVC 921
            QD+RLY VS   D+ VCN+EKL SGST+A+V SA+ FL  T+FR+   WP+ I APS ++      N  I VLMD+LP SW G L+ +D + G+   W  GNPT A L  V+        T D  L +M+ Y+ +DPRV+FMSAFPMYQ +LFENE SR G R YG SIHYHY+S   + P+A+ G  MVHS +TEMLAN+++ +AV TKA L  +    +     + +ER     +F++C+DCP  ++P+HVKP P   C+ V +LPGNA  G+ WD E CPDWCM + P  Q    +G VDVR C
Sbjct:  243 QDMRLYQVSGKTDSVVCNNEKLTSGSTSAFVHSAKDFLASTVFRDGTQWPATILAPSYLVPEKNV-NHMIEVLMDSLPPSWEGKLLFVDHMAGFSIHWTQGNPTRAALKDVRITATGRTPTDDVALRKMDGYQTQDPRVSFMSAFPMYQAKLFENERSRQGIRHYGASIHYHYMSSTTSDPEAHNGTTMVHSTMTEMLANIMLGQAVETKAELYAKAAASTGG---SEQERADVGKSFQVCSDCPRQMLPVHVKPIPEPVCEIVESLPGNAETGEVWDGELCPDWCMKQAPVSQKETQSGPVDVREC 545          
BLAST of mRNA_Ecto-sp13_S_contig10277.286.1 vs. uniprot
Match: A0A6H5JGZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGZ7_9PHAE)

HSP 1 Score: 258 bits (659), Expect = 7.620e-78
Identity = 131/308 (42.53%), Postives = 187/308 (60.71%), Query Frame = 1
Query:    1 QDLRLYTVSSVDDATVCNDEKLASGSTAAYVSSAELFLQDTIFRENKPWPSVIWAPSNMIDSD-EAPNLQISVLMDALPSSWRGTLVMLDQLYGYGYGWNTGNPTLATLSGVKPVNEFSPATRDSGLERMERYRQRDPRVTFMSAFPMYQGRLFENEESRIGERCYGCSIHYHYVSDDPNSPDAYGGAKMVHSAVTEMLANVLISKAVGTKAALRERTGTQSSDVTSTAEERKAHTSTFELCTDCPASLIPLHVKPSPLLKCDTVSTLPGNATVGKAWDDERCPDWCMAREPDRQASKGTGLVDVRVC 921
            QD+RL+  +   D+  CN+EKL S ST+A V SA  FL  T+F++   WP+++ A S +I +  E     + VLMDA+P SW G L  +D + G G  W   NPT+  L  V    +      D+GL +M+ Y+ RDPRV+FMS FPMYQ +LFENE SR G R +  S H+HY+S + ++P+   G  MVHS +TEMLANV++ +AV TKA+L  +      ++   + E      +F++C DCP +L+P HVKP P   C+ + +LPG A +G  W    CPDWCM +EP  Q +  + +VDVR+C
Sbjct:  305 QDMRLFRFTISTDSVACNNEKLTSESTSALVHSAGQFLASTVFQDGGQWPTMMMAASRLIPTRAEHTQFSVEVLMDAMPPSWEGKLFFVDHMAGLGNYWTEENPTMTALKNVGIWFDRMSPDDDNGLGKMDGYQTRDPRVSFMSVFPMYQAKLFENEGSRNGIRRFAGSQHFHYISKETSAPETRNGTIMVHSTITEMLANVILGRAVETKASLHAKAAASKDEIQKLSSEVGK---SFQVCWDCPGTLLPFHVKPIPEPVCEILESLPGGAKMGDVWSGSLCPDWCMKQEPVSQKNTQSDVVDVRMC 609          
BLAST of mRNA_Ecto-sp13_S_contig10277.286.1 vs. uniprot
Match: A0A6H5JGW9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGW9_9PHAE)

HSP 1 Score: 239 bits (609), Expect = 4.360e-71
Identity = 133/309 (43.04%), Postives = 180/309 (58.25%), Query Frame = 1
Query:   37 DATVCNDEKLASGSTAAYVSSAELFLQDTIFRENKPWPSVIWAPSNMIDSDEAPNLQISVLMDALPSSWRGTLVMLDQLYGYGYGWNTGNPTLATLSGVKPVNEFSPATRDSGLERMERYRQRDPRVTFMSAFPMYQGRLFENEESRIGERCYGCSIHYHYVSDDPNSPDAYGGAKMVHSAVTEMLANVLISKAVGTKAALRERTGTQSSDVTSTAEE------RKAHT---STFE-----LCTDCPASLIPLHVKPSPLLKCDTVSTLPGNATVGKAWDDERCPDWCMAREPDRQASKGTGLVDVRVC 921
            D+ VCN+EKL SGSTAA++ SAE FL  TIFRE  PWP+V+ APSN+I                 PS+  GT   ++++      W   NPT+  L  V+          D+GL +M+ Y  RDPRV+FMS FPMYQ +LFENE+S+ G R +  S H+HYVS D + P+   G  MVHS +TEMLANV+I +AV TKA L  +    + ++     E       KA T     F+     +C+DCP+SL+P HVK  P   C+ V +LPG+A  G+AW  + CPDWCM + P  Q+   +G+V+VR C
Sbjct:  258 DSLVCNNEKLMSGSTAAFIHSAEQFLASTIFREGGPWPTVVMAPSNLI-----------------PSNNEGTQFSVEEVL-----WKEENPTMTALEDVRMSYLSRSPDDDNGLGKMDGYETRDPRVSFMSVFPMYQAKLFENEQSKNGIRRFAVSQHFHYVSSDASGPETRNGTIMVHSTITEMLANVMIGRAVETKAKLYAKAAASTDEIRKMNAEVGKSFQAKAGTRRNGQFQREFVTVCSDCPSSLLPFHVKAIPESVCEIVESLPGHAKTGEAWPGDLCPDWCMKQAPVSQSKTESGVVEVRRC 544          
BLAST of mRNA_Ecto-sp13_S_contig10277.286.1 vs. uniprot
Match: D8LHZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHZ4_ECTSI)

HSP 1 Score: 209 bits (533), Expect = 5.600e-60
Identity = 110/244 (45.08%), Postives = 149/244 (61.07%), Query Frame = 1
Query:  202 LQISVLMDALPSSWRGTLVMLDQLYGYGYGWNTGNPTLATLSGVKPVNEFSPATRDSGLERMERYRQRDPRVTFMSAFPMYQGRLFENEESRIG---ERCYGCSIHYHYVSDDPNSPDAYGGAKMVHSAVTEMLANVLISKAVGTKAALRERTGTQSSDVTS-TAEERKAHTSTFELCTDCPASLIPLHVKPSPLLKCDTVSTLPGNATVGKAWDDERCPDWCMAREPDRQASKGTGLVDVRVC 921
            L   VLM ALP SW G L  +D + G+   W   NPT+  L  V+  +  S    D+GL +ME Y  RDPRV+FMS FPMYQ +LFENEES  G    R +  S H+HYVS D ++P+   G  MVHS +TEMLANV+I +AV TKA L  +    + ++   +AE  K+    F++C+DCP++L+P HVK  P   C+ V +LPG+A  G+ W    CPDWCM + P  Q+   +G+V+VR C
Sbjct:  295 LTYQVLMGALPPSWEGKLSFVDHMAGFEILWKEDNPTMTDLEDVRIWHLGSSPDDDNGLGKMEGYETRDPRVSFMSVFPMYQAKLFENEESNNGINGVRRFAASHHFHYVSSDASAPETRNGTIMVHSTITEMLANVMIGRAVETKAKLYAKAAASTDEIRKMSAEVGKS----FQVCSDCPSALLPFHVKAIPESVCEIVESLPGHAKTGEVWAGSLCPDWCMKQAPMSQSKTESGVVEVRRC 534          
BLAST of mRNA_Ecto-sp13_S_contig10277.286.1 vs. uniprot
Match: D7FLN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLN2_ECTSI)

HSP 1 Score: 202 bits (514), Expect = 6.020e-58
Identity = 127/309 (41.10%), Postives = 165/309 (53.40%), Query Frame = 1
Query:    1 QDLRLYTVS-SVDDATVCNDEKLASGSTAAYVSSAELFLQDTIFRENKPWPSVIWAPSNMIDSDEAPNLQISVLMDALPSSWRGTLVMLDQLYGYGYGWNTGNPTLATLSGVKPVNEFSPATR-DSGLERMERYRQRDPRVTFMSAFPMYQGRLFENEESRIGERCYGCSIHYHYVSDDPNSPDAYGGAKMVHSAVTEMLANVLISKAVGTKAALRERTGTQSSDVTSTAEERKAHTSTFELCTDCPASLIPLHVKPSPLLKCDTVSTLPGNATVGKAWDDERCPDWCMAREPDRQASKGTGLVDVRVC 921
            QDLRL+ V  + DD+ VC+D+KLA  + A +V++A  FL+ ++F   K WPSVI AP  M DSDEA NL I+V+MDALPS+W GTL+M++ + G G+ +N  NPT ATL+ V P    S     D+GL R++RY+Q+D R  FMS FP                                                      ++ISKAVG+KAAL E+         ST   R      FE+CTDCPASLIP HVKP P+  C+  S L G+A VG+AW    CP WC ++EP         L DVRVC
Sbjct:  211 QDLRLHEVGLAQDDSAVCHDDKLAINNVAVFVAAARRFLRRSVFAAGKQWPSVIMAPPFMEDSDEAANLPITVIMDALPSAWNGTLLMMEHMAGLGFTYNYDNPTAATLAEVNPTWHLSKFIGVDNGLGRIKRYQQQDARTKFMSTFP------------------------------------------------------IVISKAVGSKAALYEKA------TPSTNTHRGGGNEIFEVCTDCPASLIPHHVKPVPVPVCNATSVLAGDAAVGEAWGGRGCPQWC-SKEP---VDGVLNLKDVRVC 455          
BLAST of mRNA_Ecto-sp13_S_contig10277.286.1 vs. uniprot
Match: A0A6H5K539_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K539_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 7.000e-57
Identity = 106/241 (43.98%), Postives = 144/241 (59.75%), Query Frame = 1
Query:  202 LQISVLMDALPSSWRGTLVMLDQLYGYGYGWNTGNPTLATLSGVKPVNEFSPATRDSGLERMERYRQRDPRVTFMSAFPMYQGRLFENEESRIGERCYGCSIHYHYVSDDPNSPDAYGGAKMVHSAVTEMLANVLISKAVGTKAALRERTGTQSSDVTS-TAEERKAHTSTFELCTDCPASLIPLHVKPSPLLKCDTVSTLPGNATVGKAWDDERCPDWCMAREPDRQASKGTGLVDVRVC 921
            L   VLMDALP SW G L  +D + G+G  W   NPT+  L  V+     S    D+GL +M+ Y  RDPR        MYQ +LFENE+S+ G R +  S H+HYVS D + P+   G  MVHS +TEMLANV+I +AV TKA L  +    + ++    AE  KA    F++C+DCP++L+P HVK  P   C+ V +LPG+A  G+AW    CPDWCM + P  Q++  +G+V+VR C
Sbjct:  278 LTYQVLMDALPPSWEGKLSFVDHMAGFGIMWEEENPTMTALEDVRMWYLSSSPDDDNGLGKMDAYETRDPR--------MYQAKLFENEQSKNGIRRFAVSQHFHYVSSDASGPETRNGTIMVHSTITEMLANVMIGRAVETKAKLYAKAAASTDEIRKMNAEFGKA----FQVCSDCPSALLPFHVKAIPESVCEIVQSLPGDAKTGEAWPGSLCPDWCMKQAPVSQSTTQSGVVEVRWC 506          
BLAST of mRNA_Ecto-sp13_S_contig10277.286.1 vs. uniprot
Match: D7FXD9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXD9_ECTSI)

HSP 1 Score: 195 bits (495), Expect = 1.960e-54
Identity = 104/215 (48.37%), Postives = 138/215 (64.19%), Query Frame = 1
Query:  292 WNTGNPTLATLSGVKPVNEFSPATR-----DSGLERMERYRQRDPRVTFMSAFPMYQGRLFENEESRIGERCYGCSIHYHYVSDDPNSPDAYGGAKMVHSAVTEMLANVLISKAVGTKAALRERTGTQSSDVTSTAEERKAHTSTFELCTDCPASLIPLHVKPSPLLKCDTVSTLPGNATVGKAWDDERCPDWCMAREPDRQASKGTGLVDVRVC 921
            W  GNPT+A L  V        A+R      S L +M+ Y+ RD RV+FMSAFPMYQ + FENE S+ G R YG +IHYHY+S   ++P+A+ G+ MVHS +TEMLANV+I +AV TKAAL  +    S+DV    +ER     +F++C+DCP  L+P HVKP P   C+T  +L G+A VG+ W+ E CPDWCM + P  Q +  +G VDVR C
Sbjct:  321 WYEGNPTMAALEDVSIAFTGGRASRRPPFDGSALSKMDGYQARDSRVSFMSAFPMYQAKFFENEGSKQGTRRYGGNIHYHYISSAASNPEAHNGSIMVHSTMTEMLANVMIGRAVETKAALFAKAAA-STDVNK--QERADVGKSFQVCSDCPRDLMPFHVKPIPDPICETAESLRGDAQVGEVWNGELCPDWCMKQAPVSQLATQSGPVDVREC 532          
BLAST of mRNA_Ecto-sp13_S_contig10277.286.1 vs. uniprot
Match: A0A6H5K8P1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8P1_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 1.320e-50
Identity = 104/225 (46.22%), Postives = 135/225 (60.00%), Query Frame = 1
Query:    1 QDLRLYTVSSVDDATVCNDEKLASGSTAAYVSSAELFLQDTIFRENKPWPSVIWAPSNMIDSDEAPNL-----------QISVLMDALPSSWRGTLVMLDQLYGYGYGWNTGNPTLATLSGVKPVNEFSPATRDSGLERMERYRQRDPRVTFMSAFPMY--QGRLFENEESRIGERCYGCSIHYHYVSDDPNSPDAYGGAKMVHSAVTEMLANVLISKAV-GTKA 633
            QD+RLY VS   D+ VCN+EKL SGSTAA+V SA+ FL  T FR+   WP+ I APS ++  +    +              VLMD+LP SW G L+ +D + G+   W  GNPT   L  V+        T D  L +M+ Y+ +DPRV+F+SAFP+   +  LFENE SR G R YG SIHYHYVS   + P+A+ G  MVHS +TEMLANV   + + GTKA
Sbjct:  228 QDMRLYQVSGKTDSVVCNNEKLTSGSTAAFVHSAKEFLASTAFRDGTQWPATILAPSYLVPENNVNQMIEAYIRPASCAHAQVLMDSLPPSWEGKLLFVDHMAGFRIHWTQGNPTRTALMDVRITATGRTPTDDFALRKMDGYQTQDPRVSFISAFPVSFAERNLFENERSRQGIRHYGASIHYHYVSSTTSDPEAHNGTTMVHSTMTEMLANVSRRRVLTGTKA 452          
BLAST of mRNA_Ecto-sp13_S_contig10277.286.1 vs. uniprot
Match: D7G348_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G348_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 2.280e-50
Identity = 93/211 (44.08%), Postives = 128/211 (60.66%), Query Frame = 1
Query:  292 WNTGNPTLATLSGVKPVNEFSPATRDSGLERMERYRQRDPRVTFMSAFPMYQGRLFENEESRIGERCYGCSIHYHYVSDDPNSPDAYGGAKMVHSAVTEMLANVLISKAVGTKAALRERTGTQSSDVTS-TAEERKAHTSTFELCTDCPASLIPLHVKPSPLLKCDTVSTLPGNATVGKAWDDERCPDWCMAREPDRQASKGTGLVDVRVC 921
            W   NPT+  L GV           D+GL +M+ Y+ RD RV+FMS FPMYQ +LFEN++SR G R +  S H+H+VS D ++P+   G  MVHS +TEMLANV++ +AV TKA L  +    + ++   +AE  K+    F++C+DCP SL+P HVK  P   CD V +LPG A  G+ W  + CPDWCM + P  Q    + +V VR C
Sbjct:  208 WTEENPTMTALKGVGIRFGGRWPNDDNGLGKMDGYQTRDSRVSFMSVFPMYQAKLFENQKSRNGLRRFAASQHFHFVSTDASAPETRNGTIMVHSTITEMLANVMVGRAVETKAKLYAKAAASTDEIRKISAEVGKS----FQVCSDCPGSLLPFHVKGIPEPVCDIVESLPGQAKTGEVWSGDLCPDWCMKQAPVSQTKTESDVVKVREC 414          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10277.286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LJ62_ECTSI1.020e-21996.20Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FXE0_ECTSI1.150e-9248.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGZ7_9PHAE7.620e-7842.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGW9_9PHAE4.360e-7143.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHZ4_ECTSI5.600e-6045.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FLN2_ECTSI6.020e-5841.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K539_9PHAE7.000e-5743.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXD9_ECTSI1.960e-5448.37Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K8P1_9PHAE1.320e-5046.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G348_ECTSI2.280e-5044.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10277contigEcto-sp13_S_contig10277:2365..5852 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score630.2
Seed ortholog evalue5.3e-178
Seed eggNOG ortholog2880.D8LJ62
Model size954
Hectar predicted targeting categoryother localisation
Exons6
EggNOG OGs2E5RD@1,2SCI8@2759
Cds size954
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10277.286.1prot_Ecto-sp13_S_contig10277.286.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10277 2365..5852 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462520.0484889-CDS-Ecto-sp13_S_contig10277:2364..26011681462520.0484889-CDS-Ecto-sp13_S_contig10277:2364..2601Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10277 2365..2601 -
1681462520.0576751-CDS-Ecto-sp13_S_contig10277:3085..32021681462520.0576751-CDS-Ecto-sp13_S_contig10277:3085..3202Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10277 3086..3202 -
1681462520.0662258-CDS-Ecto-sp13_S_contig10277:3686..38481681462520.0662258-CDS-Ecto-sp13_S_contig10277:3686..3848Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10277 3687..3848 -
1681462520.0769203-CDS-Ecto-sp13_S_contig10277:4772..49281681462520.0769203-CDS-Ecto-sp13_S_contig10277:4772..4928Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10277 4773..4928 -
1681462520.0876768-CDS-Ecto-sp13_S_contig10277:5188..52571681462520.0876768-CDS-Ecto-sp13_S_contig10277:5188..5257Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10277 5189..5257 -
1681462520.0972574-CDS-Ecto-sp13_S_contig10277:5639..58521681462520.0972574-CDS-Ecto-sp13_S_contig10277:5639..5852Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10277 5640..5852 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10277.286.1

>prot_Ecto-sp13_S_contig10277.286.1 ID=prot_Ecto-sp13_S_contig10277.286.1|Name=mRNA_Ecto-sp13_S_contig10277.286.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=318bp
QDLRLYTVSSVDDATVCNDEKLASGSTAAYVSSAELFLQDTIFRENKPWP
SVIWAPSNMIDSDEAPNLQISVLMDALPSSWRGTLVMLDQLYGYGYGWNT
GNPTLATLSGVKPVNEFSPATRDSGLERMERYRQRDPRVTFMSAFPMYQG
RLFENEESRIGERCYGCSIHYHYVSDDPNSPDAYGGAKMVHSAVTEMLAN
VLISKAVGTKAALRERTGTQSSDVTSTAEERKAHTSTFELCTDCPASLIP
LHVKPSPLLKCDTVSTLPGNATVGKAWDDERCPDWCMAREPDRQASKGTG
LVDVRVCETSSTGEDHS*
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mRNA from alignment at Ecto-sp13_S_contig10277:2365..5852-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10277.286.1 ID=mRNA_Ecto-sp13_S_contig10277.286.1|Name=mRNA_Ecto-sp13_S_contig10277.286.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3488bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10277:2365..5852- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGACCTCCGGCTGTACACCGTATCCTCGGTAGATGATGCCACGGTTTG CAACGACGAGAAGCTCGCCAGCGGCAGCACGGCGGCGTACGTGAGCTCCG CCGAGCTGTTCCTGCAAGACACAATCTTCCGTGAAAACAAGCCCTGGCCG TCCGTGATCTGGGCCCCGTCCAACATGATAGACTCGGACGAGGCCCCAAA CTTGCAAATCAGCGTGAGTGGCTCGAAAGGGAAGGTGTGTTGTTTTTAAT TGGGCGCGCTCTTGGAGATATTGGGCAACCCAGCTTGGCAAAAGCAGGGT ACAGGCGGCCACTGATTCGAGTTATCCTGGTTCTGTAGATAAGACTAAAA CGTAGACAGCCTGACGAGGTAAAAAGGATTGCGGAACCGTGTCGATATGA AATTGCATCGCGGAATAGTTTTGTCGTGTGACGCCCGATCGCCGTTTCTC CGTCTAGGAGGTAAGATCAGGATGTTCTGCAAGAGACGGCACCAGGTGGG GTGGTAAGAAGAGGGAGAGGCAGAGGCAGAGACAGAGAAGAGTCTTCAAC AACTTACGTACGTATTTGTGCGGTTCGCGCCGCTCGACACGTCAGGTGCT AATGGACGCGCTTCCTTCGAGCTGGAGAGGGACCCTCGTCATGTTGGACC AGCTTTACGGATATGTGAGCGACACATCCCGGCATGGAGAGTGTCCCCGC GTAACTCGCGTACATACCTCTTCACCTCCGTTGAGCAGGAAAACACCAGC TATGTTTCTTTTCTATCTACACTGGTGCGTGTTGTGATGCAATATATCCA GAGTAGTTGTTTCGCGATCTAAGTAGCAGAATTCCAAACTCGTTTCTGGA CAAATATGCACGATTCGCCACCGAGCGGTCATTCTCTCTCCTCACACGCG CCCTCTGTTGCCGAACCCATCCAGGGCTATGGCTGGAACACGGGAAACCC TACCCTGGCAACTCTGAGCGGAGTCAAGCCCGTAAATGAGTTCAGCCCCG CAACGAGAGATAGCGGGCTCGAGAGGATGGAGCGATACCGACAGCGAGAC CCCCGTGTGACCTTCATGAGCGCGTTCCCTGTGAGTTAATTAAATTACCT CCGCTAAATAGCGCCTTTCCCGGGTGTATTGATCCCCGGTGTCAAGCATT GCTTGTCGAACAGATCCGAAAGGAGCCTTATTGACGCCTCGTTTCCGTTT TGGAGAGGAATAAAAAATGAAGTGTGGACCATGATTGAAAAGCACAAATA GGTTCGAATACATAACGCCGTCCTTGTTTTCCGGACCTCGGCAATATGTA TCATTCATGGAGTTGTTCGTTTTTCGTTATCCTGGTTCTGGCAGGACGTT TAGGTCGGCCCCCGAACAACGTGTCTACGCGTGCCGGTTGTCGGAGTCGC AGCAGACCGTTTTGGGTGTGACGAGTCTCTTTCCCGCGCTTGCGCGGCAG GGCTCTTCGTTCTGCGTGCGGGCGTTTATCGAAGCTGTTTTGTCGGCGTT CTGCTTGGGGCCCGCTATCGTAGCATGTTCCCGACTGTTGGGCGATGCCT TCTAAAATACGCAAGGTTGACCGGGCCCCCGATGGGATGCTCACAGACGT GTACAATCACGCCGGGTGTTGTTTCCCAGACTTGCCGTAACGGGCTGGTC TTCTCTAGCGAAATCCCCCCTTTCGCGCGGTCGGTTATTTATGCCTTTAT TGTTGAGGACATGGCGAGTTACTGGTGTTTCTCCTATGTATACGGGCTAG GCTTTCCCATCAATTGCTGTTAGCGACAAGATGCGCCTGTTTCGAGGACT CGAACATGAACATCTCGGGTGGCTCCAAGCAGACCGTCCCCGCGCGGAAG TGGCCACTGCTGGTTGAGGTGGACGCCATCCTTGCAGTAAATACATGGCA ATCAGGAAAAAAGTCCGATCACGAGGGAATTTTTTTTTCCTTAAAAATGC GCGTCTCTCGTCTGTGACCATGTACGCCGCTGTTTTGTGGAAACGCTTGC GCAGATGTACCAGGGGAGACTTTTCGAGAACGAGGAGTCCCGGATCGGGG AGCGCTGCTACGGGTGCAGCATCCATTACCACTACGTTTCGGACGACCCG AACAGCCCGGACGCGTACGGTGGGGCCAAGATGGTCCACTCCGCCGTCAC CGAAATGCTCGCAAACGTACGTTTCGCAAACGCCTGTTCAGAGAGAATCC ACATCCATTTCGAGTAACCAACTAGGATATGAATGCCCTACGCCGTCCGA ATCGAAGTCTTTAATTCTGTATCAAGCGCCATGGTGTGATTGAAGTTTCT TGGGTTGGGTTCAAGATGAACATGCCTTTGCCCTTGACCAACATTAGGTT GATTTCGGCCCTGTCTAAGATGAGAATTGTTGTTATTTTCGGTCTATTTC AACTTCTGAGTCACCAAAGTGACGGATGGTGGGCAGGTCAGTCTAGTTCC AATATTCTGGAGTGTCGTTTGGCCCTCAAACTATTCGTTGCAAATTTTCT CGTCTCCTACAATCTTAGACCACCGGGATACGCAAACTCCACCGTTCCCG CCCCAGCCACCACGGTCAAAGAAGCGTGCTTCTTTTTTTTTCTTTCCTTT GCGTCGGCTTCGCTGATGTGTTTCTTGGCCGCCTGTATTTCTCGTCGCAG GTGTTGATATCAAAAGCTGTCGGTACCAAGGCTGCTCTGCGCGAGAGAAC AGGCACCCAGTCGTCCGATGTCACCTCCACGGCGGAAGAGCGAAAGGCAC ACACAAGCACTTTCGAGGTGAGGATCGACAGTCACACCAAAGCTTGGTAC TGCTGCCGCCCCTTGATACTGTTTGTTAGTGTTTGGAGTGTCGCCCAAAT ACTGAAGAGGCGAGAGAATGTCAGCACAGACACACCTGTGGAACGCATGA GCCGTTTGGAAAATATTTTGCGTGGATATTCCACGGTTGTTTGTCAAGGA TGGTCCGGCATGTCCTGCGAAGATTCGACTGTACCATACGAGTATTTCTT CGTGCCTTGAGATTCATCCTCCTGCTGCCCCCGATCACCTTCCCGCGCTC GCTAACCGCTGTACGGAGAGACTCCCCCACCCCCCTCCCGTGCATCCACC AAAAATGCGCTTCGATGAAATCAAGGTGTAAAACTAGAGACGTGAGTCTC TCCAACCTGACCAACCGCAATATTCCATCAGATTTTGTGACGGTCGTGCC TTATTCCCCGTCGTCATGTCGTGCTTGACCCCTTCCCTCATCTCTCCGCA GCTGTGCACGGACTGCCCGGCCTCCCTCATCCCGCTGCACGTCAAGCCGT CGCCGCTGCTCAAGTGCGACACCGTGTCCACCCTTCCGGGAAACGCGACG GTGGGCAAGGCGTGGGACGACGAGCGCTGCCCCGATTGGTGCATGGCCAG GGAGCCAGACCGGCAGGCGTCGAAAGGAACGGGCCTCGTCGACGTCCGGG TCTGCGAGACGTCAAGCACAGGAGAGGACCACTCTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10277:2365..5852-

>mRNA_Ecto-sp13_S_contig10277.286.1 ID=mRNA_Ecto-sp13_S_contig10277.286.1|Name=mRNA_Ecto-sp13_S_contig10277.286.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=954bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10277:2365..5852- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGACCTCCGGCTGTACACCGTATCCTCGGTAGATGATGCCACGGTTTG
CAACGACGAGAAGCTCGCCAGCGGCAGCACGGCGGCGTACGTGAGCTCCG
CCGAGCTGTTCCTGCAAGACACAATCTTCCGTGAAAACAAGCCCTGGCCG
TCCGTGATCTGGGCCCCGTCCAACATGATAGACTCGGACGAGGCCCCAAA
CTTGCAAATCAGCGTGCTAATGGACGCGCTTCCTTCGAGCTGGAGAGGGA
CCCTCGTCATGTTGGACCAGCTTTACGGATATGGCTATGGCTGGAACACG
GGAAACCCTACCCTGGCAACTCTGAGCGGAGTCAAGCCCGTAAATGAGTT
CAGCCCCGCAACGAGAGATAGCGGGCTCGAGAGGATGGAGCGATACCGAC
AGCGAGACCCCCGTGTGACCTTCATGAGCGCGTTCCCTATGTACCAGGGG
AGACTTTTCGAGAACGAGGAGTCCCGGATCGGGGAGCGCTGCTACGGGTG
CAGCATCCATTACCACTACGTTTCGGACGACCCGAACAGCCCGGACGCGT
ACGGTGGGGCCAAGATGGTCCACTCCGCCGTCACCGAAATGCTCGCAAAC
GTGTTGATATCAAAAGCTGTCGGTACCAAGGCTGCTCTGCGCGAGAGAAC
AGGCACCCAGTCGTCCGATGTCACCTCCACGGCGGAAGAGCGAAAGGCAC
ACACAAGCACTTTCGAGCTGTGCACGGACTGCCCGGCCTCCCTCATCCCG
CTGCACGTCAAGCCGTCGCCGCTGCTCAAGTGCGACACCGTGTCCACCCT
TCCGGGAAACGCGACGGTGGGCAAGGCGTGGGACGACGAGCGCTGCCCCG
ATTGGTGCATGGCCAGGGAGCCAGACCGGCAGGCGTCGAAAGGAACGGGC
CTCGTCGACGTCCGGGTCTGCGAGACGTCAAGCACAGGAGAGGACCACTC
TTGA
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