mRNA_Ecto-sp13_S_contig13616.2859.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13616.2859.1
Unique NamemRNA_Ecto-sp13_S_contig13616.2859.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13616.2859.1 vs. uniprot
Match: D7FT47_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT47_ECTSI)

HSP 1 Score: 710 bits (1832), Expect = 7.920e-249
Identity = 396/474 (83.54%), Postives = 410/474 (86.50%), Query Frame = 1 
Query:    1 KHADALKPLREAVAVLDEAIAVVSTNEGGAANSGAGTNAGSSRSTPSTTEGRVAALTRTLTGTLAFLGTSLLAPEVQPSGDDGSXXXXXXXXXXXXRGGATPGAIKEAAEKVTAAAPGFSCDDKGPTVVDSAAAGSSKEEDEAIDVLKRAHEMLKAETAAMAAAGAGQKGGPAGVFSAVGESRGEADVRKQTAKVLDTLSEAYGREKRWECARSAAEQSLTAWRSLGVAGRVGTATSLLSLGHLLLQLYGVGAGFEEASARWEEAATCFKDCAERPSVEAEVRLKIAGYYTKVARSDPARLDSLEGKISAHYSEAAVLFARERDEKTSSLKRAAAALVAAQAPRDNTAESSXXXXXXXXXXXXLVDSLEPDGRSRWELAEKEAFAWEGYAGAAGDDHEAAVRALTKAEKLLDHASVSDKDERWTLRRVGILHSLALALARSGQHAMAENKLLEAIRELQELDGVDSNAEACAHK 1422
            KHADAL+PLREAVAVLDEAIA VS NEGG ANS AGTNA SS  TPS TEGR+ ALTRTLTGTLAFLGTSLLAPEVQPS + GS             GG TPG +K  AEKVT  APGFSCDDKGP V DS  AGSSKE DEAIDVLKRAHEMLKAET AMA AG GQKGG AGV+SAVGESRGEADVRKQTAKVLDTLSEAYGREKRWE AR AAEQSLTAWRSLGVAGRVG A SLLSLGHLLLQL+GVGAGFEEASARWEEAATCFK CAERPSVEAEVRLKIAGYYTKVARSDPARL+SLEGKISAHYSEAAVLFARERDEKTSSLKRAA A+ AAQAPRD TAE S            LVDSLEPDGRSRWELAE+EAFAWEGYAGAAG+DHEAAV AL KAEKLLDHASVSDKDERWTLR+VG+LHSLALALARSG+HAMAENKLLEAIRELQ+LDGVDS AEAC HK
Sbjct:  309 KHADALEPLREAVAVLDEAIAGVSANEGGVANSSAGTNARSSPPTPSITEGRITALTRTLTGTLAFLGTSLLAPEVQPSANYGSNGSSTTTTSS---GGVTPGVMKGGAEKVTVPAPGFSCDDKGPIVADSGEAGSSKEADEAIDVLKRAHEMLKAETVAMATAGPGQKGGLAGVYSAVGESRGEADVRKQTAKVLDTLSEAYGREKRWERARLAAEQSLTAWRSLGVAGRVGAAASLLSLGHLLLQLHGVGAGFEEASARWEEAATCFKGCAERPSVEAEVRLKIAGYYTKVARSDPARLESLEGKISAHYSEAAVLFARERDEKTSSLKRAAEAVAAAQAPRDKTAEGSGSAEPVPPLPPPLVDSLEPDGRSRWELAEQEAFAWEGYAGAAGEDHEAAVTALAKAEKLLDHASVSDKDERWTLRKVGVLHSLALALARSGEHAMAENKLLEAIRELQQLDGVDSIAEACVHK 779
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13616.2859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FT47_ECTSI7.920e-24983.54Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13616contigEcto-sp13_S_contig13616:216..4463 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1446
Hectar predicted targeting categoryother localisation
Exons7
Cds size1446
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13616.2859.1prot_Ecto-sp13_S_contig13616.2859.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13616 216..4463 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462727.0363789-CDS-Ecto-sp13_S_contig13616:215..3131681462727.0363789-CDS-Ecto-sp13_S_contig13616:215..313Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13616 216..313 +
1681462727.0454159-CDS-Ecto-sp13_S_contig13616:540..10801681462727.0454159-CDS-Ecto-sp13_S_contig13616:540..1080Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13616 541..1080 +
1681462727.0561333-CDS-Ecto-sp13_S_contig13616:1488..16261681462727.0561333-CDS-Ecto-sp13_S_contig13616:1488..1626Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13616 1489..1626 +
1681462727.0659742-CDS-Ecto-sp13_S_contig13616:2251..23811681462727.0659742-CDS-Ecto-sp13_S_contig13616:2251..2381Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13616 2252..2381 +
1681462727.0757525-CDS-Ecto-sp13_S_contig13616:2805..30271681462727.0757525-CDS-Ecto-sp13_S_contig13616:2805..3027Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13616 2806..3027 +
1681462727.085388-CDS-Ecto-sp13_S_contig13616:3482..35871681462727.085388-CDS-Ecto-sp13_S_contig13616:3482..3587Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13616 3483..3587 +
1681462727.095312-CDS-Ecto-sp13_S_contig13616:4250..44631681462727.095312-CDS-Ecto-sp13_S_contig13616:4250..4463Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13616 4251..4463 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13616.2859.1

>prot_Ecto-sp13_S_contig13616.2859.1 ID=prot_Ecto-sp13_S_contig13616.2859.1|Name=mRNA_Ecto-sp13_S_contig13616.2859.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=482bp
KHADALKPLREAVAVLDEAIAVVSTNEGGAANSGAGTNAGSSRSTPSTTE
GRVAALTRTLTGTLAFLGTSLLAPEVQPSGDDGSNSSSSSSTTTSVRGGA
TPGAIKEAAEKVTAAAPGFSCDDKGPTVVDSAAAGSSKEEDEAIDVLKRA
HEMLKAETAAMAAAGAGQKGGPAGVFSAVGESRGEADVRKQTAKVLDTLS
EAYGREKRWECARSAAEQSLTAWRSLGVAGRVGTATSLLSLGHLLLQLYG
VGAGFEEASARWEEAATCFKDCAERPSVEAEVRLKIAGYYTKVARSDPAR
LDSLEGKISAHYSEAAVLFARERDEKTSSLKRAAAALVAAQAPRDNTAES
SGSADPIPPPPPPLVDSLEPDGRSRWELAEKEAFAWEGYAGAAGDDHEAA
VRALTKAEKLLDHASVSDKDERWTLRRVGILHSLALALARSGQHAMAENK
LLEAIRELQELDGVDSNAEACAHKASGSFSS*
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mRNA from alignment at Ecto-sp13_S_contig13616:216..4463+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13616.2859.1 ID=mRNA_Ecto-sp13_S_contig13616.2859.1|Name=mRNA_Ecto-sp13_S_contig13616.2859.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4248bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13616:216..4463+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGCACGCCGACGCGCTGAAGCCGCTTCGAGAGGCCGTGGCAGTGCTCGA
TGAAGCGATTGCCGTAGTGTCGACGAATGAGGGTGGCGCGGCAAACAGGT
TTGAGTTTTCGGTTCAATTCTCGAGAGGGATTCGCCCTATGGTCGGTCAA
TGCACAGCAACCCCCGCGAAATTTGAGGTAGGCAAGCGCCACGTCGTACA
ACTTTTTCGCTCGGTCGCGTGTCGCCGTCGAAAGATTCCACGCAACTCAC
CACGCTATCATAATCGGCCTTCCACCCGCCTCCTCAACCGGTTCCGATGC
ACGCTGTCGTCTCACGAATATTCAGCGGCGCCGGCACGAATGCCGGGAGC
TCTCGATCAACGCCCTCGACCACCGAGGGCAGGGTTGCGGCCCTGACGCG
CACGCTTACCGGAACGCTAGCTTTCTTAGGAACATCGCTTCTGGCCCCAG
AGGTGCAACCGAGCGGCGATGACGGCAGCAACAGCAGCAGTAGCAGCAGC
ACCACCACCAGCGTTAGAGGTGGCGCCACCCCCGGCGCCATCAAGGAAGC
AGCAGAGAAAGTGACCGCCGCGGCGCCAGGCTTTTCTTGCGACGACAAAG
GGCCGACAGTGGTAGACTCAGCGGCAGCAGGGAGTTCCAAGGAAGAAGAC
GAAGCCATCGACGTGCTCAAAAGAGCCCACGAAATGCTCAAGGCTGAAAC
GGCGGCAATGGCGGCGGCGGGGGCCGGCCAAAAAGGCGGCCCGGCCGGGG
TTTTCTCTGCAGTCGGAGAGAGCCGCGGGGAGGCGGACGTGAGGAAGCAG
ACGGCCAAAGTCCTCGACACGCTCTCGGAAGCCTACGGTCGCGAGAAACG
CTGGGAATGTGCCAGGTGCGTCTCGTAAAGGGCAGGGAGCCCCTGGCGGA
GGTGGGGCGTGTTGAAGCGTTGTGTCTTGGCCCGTGCAACTGCTGCCGTG
TGTGCATTTCGCCAGCTCCTTCGTGCGCATGCTATTCTTGGGGCTGTGGG
GCTGTGGAACTACCAGATAGTCTGTTGGCGCTAGGTTGAGAGTGCGAAGA
GTCCGCCCTGCAATGATCGTGTGCGCGTCTGGCGCACACCCTACAAGCCG
GAGTTCATCTGCAAACCCAACCATCAGGCCACGCGTAAAGTTGTCGGCCT
CCCGAGATGTGTTGACTTCGCAGCGATCGATGGTGGTTGCCGTCAGGTTA
GAGGTCGTGTTGGTGCTTACCCCCCGTATTTCATCGTCGTTTTTCTCATG
CTGTGGGTTGTGGGTTTTTCTAGGTCGGCCGCGGAACAGTCTCTGACGGC
CTGGCGCAGCCTCGGAGTGGCCGGCAGGGTCGGTACGGCTACAAGCCTTT
TGTCACTGGGGCACCTCCTGCTGCAGCTGTATGGGGTAGGGGCTGGCTTC
GAAGAGGCGAGGTACGCTAACCCCGAGCTGTTGCCGTGTGTGTGTGTGTG
TTCTTTTTTTTTGGCACCGACCGCACTAGCCGGCTGACCATCGAAGAAAC
GCCAGTCTCAGTGCCGTTGAATGCACAAAAGGCTTCAAAAGCCCATGATC
TGGGACCCCGTGAGGGGTAGGCTATGCTATTCTCCGGATTACAGAGAGAT
GTGTGTGTGTTTTTATTATTAGCATCAACCGCGCTAACCAGCTGACCAAT
GAAAAGACGTCAGTCTTAGTGCGGTTGATGTGTGTGTGTGTGTCAGTCAG
CCGTAAGCCAAAATGCTTCCGGCGCTATTGGCGTTCGCTCTTGCGGAGCC
CCCAAGCGGGTTTTCTCCGGGTGCCTGCAGGGCATGCGGAACATGTCAGT
TCCCCATCACCAATTTCTTCCGTCAATTGTAATAGAGTTTCGGTCGCTAG
CCGTCTAGGTCACAAATAGGTCGTCGCCCTTGGCGTGTGAATTTCGACCC
GATGACACAAGCTATGTTTCACGGGAAGCCTTCGAAGTTCGGACCCGTCG
ATCTGGCAAGTAGGAGGGAGACTTTCTCTGGAAATAGTCGTCGTTGTGCG
TGGCTTGACTCTCCGGACTCTTGTTCACGTCTAAAGCGCTCGATGGGAGG
AGGCGGCGACGTGTTTCAAAGATTGCGCGGAGCGCCCATCAGTTGAGGCA
GAGGTCCGGCTCAAGATTGCCGGCTACTACACCAAGGTGGCGCGGTCCGA
CCCTGCGCGCCTAGACGTGAGGCCGCTGCTGTTCAGGAACTCGTTGGCAC
GCAGTGTTATGTAGTCAGAAACACGTGTCCGGGAGTGCCTTCTTCACGTC
ATACGCGCGGTTGTCCCGAAATCTGTCTTCATGTGGTTTGTTCGCGCGTG
TACGCAGTGTTGAAATACGTAAGGATGTACCCGTTTTTTTCGACAAAATC
GTTTGGGCTGTCGTTCCGCACAAAGATTTGAAATCTTTTGTACATTCGCC
CTTGAGCGCTCTGACCTGTGAGTGGTGTGAATTGATTATGTGGCCCTCGG
TTTCTGTTCGGATTCTCGCTGAGAGATTGAATACCATGGTATGAATATGA
ATAGAGTTGTAGCCCAAACCTCTTCCCTACCGGTGCCTGTCGCTTGGGCG
GAACGCCTGCGATCGAACTCCCCGAACGTCGCCTGGACAGTCTCTAGAGG
GGAAAATCTCAGCCCATTATTCCGAAGCGGCCGTTCTATTCGCTCGCGAG
CGGGACGAAAAGACGAGCTCTCTGAAACGGGCGGCTGCGGCCTTGGTAGC
AGCCCAGGCGCCACGGGACAATACGGCAGAAAGTTCGGGGAGCGCGGATC
CCATACCACCGCCGCCCCCTCCGTTGGTGGATTCGCTCGAGCCTGATGGG
AGGTCGCGCTGGGTGAGTGTGCTTCGATTCGGGAGGGTCGGGGACTTATT
CTGTTTCGGCTGTTGCCTTGGTGTGAAGAGGCTGTCGTTGTGGCCCTCCA
AAGCCACGCGAGGGAGACAGGTACCGGCACGCTTGGGCCCGTGCGGGAGG
TTTACCTGCAGGAGTCGGTTGAGAGTCGTGCAGGCGCTGAAAGTAGCGGC
CCGTGCTTACGGGTGTCGGACACGAGCAGTGGTCTTGCGGAGATGCTTTG
TCGGAACATGCTCGCGGCGGTCGTAGTGCATCAAGCGCGAGTTGCTTGAG
GTTCCTCCTTTTCAAGCCTTATGGTCAGCCGCTTGGCGTAATTGTCTTCA
CGTGTGTATTCCGTTCAGAGCCGTCGGCGTTTGCTCGTCTGAATAATTGT
CTTCACGTGTGTATTCCGTTCAGAGCCGTCGGCGTTTGCTCGTCTGAACC
ATCCGTGCGCGTCCCAGGAACTGGCGGAGAAGGAGGCGTTCGCATGGGAG
GGATACGCGGGGGCTGCAGGGGATGACCACGAAGCGGCTGTCAGGGCTCT
GACCAAGGCCGAAAAGCTGCTGGTGCGCGTTGTGGAAATACGTAGTGTTG
TTGGTTGATTCTTAGTTTTGTGCACAAGCACGAAACACGATGGTTTTTTA
GTCAAAATCCAACGACGAGGCGTGTGGGTAGTTGGTACAGTAGGTGTGGC
ACAAGCGTATCCATTTTTTTTTCTGTAACTCGTCCACCTTCGACGCCCAG
ACGTATCTGTTTTCTGCGACAACTTGATCGCGTGTGCCCCACTTCGTGAT
GCTAGTGTAATCGTTTGCTCCACGGCGTAACGGGTGGTGCCCTTCCCCGT
TGCAGATTGCGTCGAGGGCCCTTCCATACCGGTCTTGTGCCAGCGTTTTT
GCTCATCTGGGTGACGCTACAGCGAATCGTGGACGTTGAGCCCGAGCTTC
TTTCGCTCTCAAGCAAAGAAGGGCAGTGTAGCAAGGGGGCAAAGGCTTGC
TTGCATCCGTGAATATCTGGCAATCGTTCGCTTCCTCTCGTTCACCAATG
TTTTTGCTGTTGTTGTTGTCTTCACGTTCAAAACCGTTCCGTTGTCTCTG
CCCAGTACCTTCTTCTGTCCGTACTAGCATAGTCGATCACTTGACGGGGT
CGATTCCCGTGGTCACAGGCTGACCTACCCAAATAAGGTGTCAATCCTCA
ATCTTGGCCGTTTGACGTTGTCGCCACACGCGAAGGATCACGCGTCTGTA
TCGGACAAGGACGAACGCTGGACTCTTCGGAGGGTCGGGATCTTGCACAG
CCTGGCGTTGGCTCTGGCGCGAAGCGGACAACACGCGATGGCCGAGAACA
AGCTGCTGGAAGCCATCCGAGAGCTGCAAGAGCTTGACGGGGTCGACTCT
AACGCTGAAGCCTGTGCGCACAAGGCGAGCGGGAGTTTCTCTTCATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13616:216..4463+

>mRNA_Ecto-sp13_S_contig13616.2859.1 ID=mRNA_Ecto-sp13_S_contig13616.2859.1|Name=mRNA_Ecto-sp13_S_contig13616.2859.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1446bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13616:216..4463+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGCACGCCGACGCGCTGAAGCCGCTTCGAGAGGCCGTGGCAGTGCTCGA
TGAAGCGATTGCCGTAGTGTCGACGAATGAGGGTGGCGCGGCAAACAGCG
GCGCCGGCACGAATGCCGGGAGCTCTCGATCAACGCCCTCGACCACCGAG
GGCAGGGTTGCGGCCCTGACGCGCACGCTTACCGGAACGCTAGCTTTCTT
AGGAACATCGCTTCTGGCCCCAGAGGTGCAACCGAGCGGCGATGACGGCA
GCAACAGCAGCAGTAGCAGCAGCACCACCACCAGCGTTAGAGGTGGCGCC
ACCCCCGGCGCCATCAAGGAAGCAGCAGAGAAAGTGACCGCCGCGGCGCC
AGGCTTTTCTTGCGACGACAAAGGGCCGACAGTGGTAGACTCAGCGGCAG
CAGGGAGTTCCAAGGAAGAAGACGAAGCCATCGACGTGCTCAAAAGAGCC
CACGAAATGCTCAAGGCTGAAACGGCGGCAATGGCGGCGGCGGGGGCCGG
CCAAAAAGGCGGCCCGGCCGGGGTTTTCTCTGCAGTCGGAGAGAGCCGCG
GGGAGGCGGACGTGAGGAAGCAGACGGCCAAAGTCCTCGACACGCTCTCG
GAAGCCTACGGTCGCGAGAAACGCTGGGAATGTGCCAGGTCGGCCGCGGA
ACAGTCTCTGACGGCCTGGCGCAGCCTCGGAGTGGCCGGCAGGGTCGGTA
CGGCTACAAGCCTTTTGTCACTGGGGCACCTCCTGCTGCAGCTGTATGGG
GTAGGGGCTGGCTTCGAAGAGGCGAGCGCTCGATGGGAGGAGGCGGCGAC
GTGTTTCAAAGATTGCGCGGAGCGCCCATCAGTTGAGGCAGAGGTCCGGC
TCAAGATTGCCGGCTACTACACCAAGGTGGCGCGGTCCGACCCTGCGCGC
CTAGACTCTCTAGAGGGGAAAATCTCAGCCCATTATTCCGAAGCGGCCGT
TCTATTCGCTCGCGAGCGGGACGAAAAGACGAGCTCTCTGAAACGGGCGG
CTGCGGCCTTGGTAGCAGCCCAGGCGCCACGGGACAATACGGCAGAAAGT
TCGGGGAGCGCGGATCCCATACCACCGCCGCCCCCTCCGTTGGTGGATTC
GCTCGAGCCTGATGGGAGGTCGCGCTGGGAACTGGCGGAGAAGGAGGCGT
TCGCATGGGAGGGATACGCGGGGGCTGCAGGGGATGACCACGAAGCGGCT
GTCAGGGCTCTGACCAAGGCCGAAAAGCTGCTGGATCACGCGTCTGTATC
GGACAAGGACGAACGCTGGACTCTTCGGAGGGTCGGGATCTTGCACAGCC
TGGCGTTGGCTCTGGCGCGAAGCGGACAACACGCGATGGCCGAGAACAAG
CTGCTGGAAGCCATCCGAGAGCTGCAAGAGCTTGACGGGGTCGACTCTAA
CGCTGAAGCCTGTGCGCACAAGGCGAGCGGGAGTTTCTCTTCATAG
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