mRNA_Ecto-sp13_S_contig13613.2858.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13613.2858.1
Unique NamemRNA_Ecto-sp13_S_contig13613.2858.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13613.2858.1 vs. uniprot
Match: D8LIA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIA9_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 5.100e-24
Identity = 59/68 (86.76%), Postives = 60/68 (88.24%), Query Frame = 1 
Query:    1 RSLSPAPSHGAPASGSLFGTGPPPAAAPLSPGRSKMTRTGLKTVSPWSSNRLFSSSSSQA-PAATGEA 201
            RSLSPAPSHGAPASG +FGTGPPPAAAP SPGRSKMTRTGL TVSPWSSNR FSSSSSQ  P A GEA
Sbjct:   23 RSLSPAPSHGAPASGYVFGTGPPPAAAPPSPGRSKMTRTGLTTVSPWSSNRRFSSSSSQGEPVAAGEA 90
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BLAST of mRNA_Ecto-sp13_S_contig13613.2858.1 vs. uniprot
Match: A0A6H5K327_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K327_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 6.960e-24
Identity = 54/56 (96.43%), Postives = 54/56 (96.43%), Query Frame = 1 
Query:    1 RSLSPAPSHGAPASGSLFGTGPPPAAAPLSPGRSKMTRTGLKTVSPWSSNRLFSSS 168
            RSLSPAPSHGAPASGSLFG GPPPAAAP SPGRSKMTRTGLKTVSPWSSNRLFSSS
Sbjct:   20 RSLSPAPSHGAPASGSLFGKGPPPAAAPRSPGRSKMTRTGLKTVSPWSSNRLFSSS 75
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13613.2858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIA9_ECTSI5.100e-2486.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K327_9PHAE6.960e-2496.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13613contigEcto-sp13_S_contig13613:2045..2437 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size395
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_001450.1
Cds size393
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462727.0068069-CDS-Ecto-sp13_S_contig13613:2044..24371681462727.0068069-CDS-Ecto-sp13_S_contig13613:2044..2437Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13613 2045..2437 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13613.2858.1prot_Ecto-sp13_S_contig13613.2858.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13613 2045..2437 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13613.2858.1

>prot_Ecto-sp13_S_contig13613.2858.1 ID=prot_Ecto-sp13_S_contig13613.2858.1|Name=mRNA_Ecto-sp13_S_contig13613.2858.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=131bp
RSLSPAPSHGAPASGSLFGTGPPPAAAPLSPGRSKMTRTGLKTVSPWSSN
RLFSSSSSQAPAATGEAVGGHHGTAFMTPQQEQQPPATTDYHHADFFRRV
SASTSARAAPAACSTANPSPPPAAAAAAAAA
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mRNA from alignment at Ecto-sp13_S_contig13613:2045..2437-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13613.2858.1 ID=mRNA_Ecto-sp13_S_contig13613.2858.1|Name=mRNA_Ecto-sp13_S_contig13613.2858.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13613:2045..2437- (Ectocarpus species13 EcNAP12_S_4_19m)
CGATCCCTCAGCCCGGCACCATCTCACGGGGCTCCCGCCTCGGGCTCCCT
CTTTGGCACGGGACCGCCGCCCGCCGCCGCTCCGCTTTCGCCGGGGCGGA
GCAAGATGACGCGGACCGGCCTCAAGACCGTGTCGCCGTGGTCAAGCAAC
CGACTGTTTTCGTCGTCGTCGTCGCAGGCACCGGCGGCGACGGGGGAGGC
GGTTGGAGGACATCACGGGACAGCGTTCATGACGCCACAGCAGGAGCAGC
AGCCTCCCGCGACCACCGACTACCATCACGCCGACTTTTTCAGACGCGTG
TCCGCTTCGACCTCGGCGAGGGCGGCGCCTGCGGCTTGCTCCACGGCCAA
CCCTAGCCCTCCCCCGGCGGCGGCGGCGGCGGCGGCGGCGGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13613:2045..2437-

>mRNA_Ecto-sp13_S_contig13613.2858.1 ID=mRNA_Ecto-sp13_S_contig13613.2858.1|Name=mRNA_Ecto-sp13_S_contig13613.2858.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13613:2045..2437- (Ectocarpus species13 EcNAP12_S_4_19m)
CGATCCCTCAGCCCGGCACCATCTCACGGGGCTCCCGCCTCGGGCTCCCT
CTTTGGCACGGGACCGCCGCCCGCCGCCGCTCCGCTTTCGCCGGGGCGGA
GCAAGATGACGCGGACCGGCCTCAAGACCGTGTCGCCGTGGTCAAGCAAC
CGACTGTTTTCGTCGTCGTCGTCGCAGGCACCGGCGGCGACGGGGGAGGC
GGTTGGAGGACATCACGGGACAGCGTTCATGACGCCACAGCAGGAGCAGC
AGCCTCCCGCGACCACCGACTACCATCACGCCGACTTTTTCAGACGCGTG
TCCGCTTCGACCTCGGCGAGGGCGGCGCCTGCGGCTTGCTCCACGGCCAA
CCCTAGCCCTCCCCCGGCGGCGGCGGCGGCGGCGGCGGCGGCG
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