mRNA_Ecto-sp13_S_contig1361.2855.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1361.2855.1
Unique NamemRNA_Ecto-sp13_S_contig1361.2855.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1361.2855.1 vs. uniprot
Match: D8LJR4_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJR4_ECTSI)

HSP 1 Score: 170 bits (430), Expect = 7.920e-53
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1
Query:    1 EYETPHGRIDLSSCMTVKSAEQKTSKRNALEVSTHETTYFMYANTEKEKDDWIGAIGRAIVQASSTYQGDNNNGDSDSDDEYDYR 255
            EYETPHGRIDLSSCMTVKSAEQKTSKRNALEVSTHETTYFMYANTEKEKDDWIGAIGRAIVQASSTYQGDNNNGDSDSDDEYDYR
Sbjct:   58 EYETPHGRIDLSSCMTVKSAEQKTSKRNALEVSTHETTYFMYANTEKEKDDWIGAIGRAIVQASSTYQGDNNNGDSDSDDEYDYR 142          
BLAST of mRNA_Ecto-sp13_S_contig1361.2855.1 vs. uniprot
Match: A0A835ZE28_9STRA (PH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE28_9STRA)

HSP 1 Score: 127 bits (318), Expect = 8.350e-36
Identity = 65/82 (79.27%), Postives = 71/82 (86.59%), Query Frame = 1
Query:    1 EYETPHGRIDLSSCMTVKSAEQKTSKRNALEVSTHETTYFMYANTEKEKDDWIGAIGRAIVQASSTYQGDNNNGDSDSDDEY 246
            E   PHG IDLSSCMTVKSAEQKT KRNALEVST +TT+FM+A TEKEKDDWIGAIGRAIVQ+SSTYQ +  +GDSDSD EY
Sbjct:   57 EMAAPHGMIDLSSCMTVKSAEQKTHKRNALEVSTQDTTFFMFAGTEKEKDDWIGAIGRAIVQSSSTYQNEEASGDSDSDYEY 138          
BLAST of mRNA_Ecto-sp13_S_contig1361.2855.1 vs. uniprot
Match: W7TJA6_9STRA (Pleckstrin like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJA6_9STRA)

HSP 1 Score: 107 bits (266), Expect = 6.260e-28
Identity = 55/81 (67.90%), Postives = 64/81 (79.01%), Query Frame = 1
Query:   10 TPHGRIDLSSCMTVKSAEQKTSKRNALEVSTHETTYFMYANTEKEKDDWIGAIGRAIVQASSTYQGDNNNGDSDSDDEYDY 252
            +PHG IDLSSCMTVKSAE K  KRNALEVST ETT+ MYA+TEKEKDDWIGA+GRAIV++S+TY  +      + DD  DY
Sbjct:   56 SPHGMIDLSSCMTVKSAELKAQKRNALEVSTPETTFLMYADTEKEKDDWIGAVGRAIVRSSTTYTQEVGEAGDEDDDGSDY 136          
BLAST of mRNA_Ecto-sp13_S_contig1361.2855.1 vs. uniprot
Match: F0Y7C7_AURAN (PH domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y7C7_AURAN)

HSP 1 Score: 105 bits (262), Expect = 9.910e-28
Identity = 52/70 (74.29%), Postives = 58/70 (82.86%), Query Frame = 1
Query:    1 EYETPHGRIDLSSCMTVKSAEQKTSKRNALEVSTHETTYFMYANTEKEKDDWIGAIGRAIVQASSTYQGD 210
            E   PHG IDL+SCMTVKSAE K  KRNALEVST +TTY M+A++EKEKDDWIGAIGRAIV+ SSTY  D
Sbjct:   29 ESSVPHGMIDLASCMTVKSAEYKAHKRNALEVSTPDTTYLMFADSEKEKDDWIGAIGRAIVRCSSTYTND 98          
BLAST of mRNA_Ecto-sp13_S_contig1361.2855.1 vs. uniprot
Match: A0A7S2AKD7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AKD7_9STRA)

HSP 1 Score: 105 bits (261), Expect = 4.870e-27
Identity = 54/80 (67.50%), Postives = 63/80 (78.75%), Query Frame = 1
Query:    1 EYETPHGRIDLSSCMTVKSAEQKTSKRNALEVSTHETTYFMYANTEKEKDDWIGAIGRAIVQASSTY-QGDNNNGDSDSD 237
            E  TPHG +DL+ CMTVKSAE K  K+NALEVST +TT+ M+A+TEKEKDDWIGAIGRAIV+ SSTY + D    D DSD
Sbjct:   70 EAATPHGMVDLAQCMTVKSAETKAGKKNALEVSTADTTFLMFADTEKEKDDWIGAIGRAIVRCSSTYTEEDGRENDDDSD 149          
BLAST of mRNA_Ecto-sp13_S_contig1361.2855.1 vs. uniprot
Match: A0A7S2LSC0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LSC0_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.070e-25
Identity = 46/65 (70.77%), Postives = 56/65 (86.15%), Query Frame = 1
Query:   13 PHGRIDLSSCMTVKSAEQKTSKRNALEVSTHETTYFMYANTEKEKDDWIGAIGRAIVQASSTYQG 207
            PHG IDLS+C TVKSA+ KT K N+ E+STH+TT+F+YA+ EKEKDDWIG +GRAIV+ SSTYQG
Sbjct:   62 PHGMIDLSTCTTVKSADVKTRKNNSFEISTHDTTFFLYADNEKEKDDWIGNVGRAIVRCSSTYQG 126          
BLAST of mRNA_Ecto-sp13_S_contig1361.2855.1 vs. uniprot
Match: A0A7S1E2P5_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E2P5_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 8.040e-25
Identity = 43/67 (64.18%), Postives = 57/67 (85.07%), Query Frame = 1
Query:    1 EYETPHGRIDLSSCMTVKSAEQKTSKRNALEVSTHETTYFMYANTEKEKDDWIGAIGRAIVQASSTY 201
            EY+ PHG IDLS C TVKSA+ K+ KRN+ E+ST +TT+ +YA+TEKEKDDWIG++G++IV+ SSTY
Sbjct:    6 EYQAPHGMIDLSQCTTVKSADLKSKKRNSFEISTPDTTFLLYADTEKEKDDWIGSVGKSIVRCSSTY 72          
BLAST of mRNA_Ecto-sp13_S_contig1361.2855.1 vs. uniprot
Match: A0A7S1G2Q7_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G2Q7_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 8.180e-25
Identity = 49/71 (69.01%), Postives = 60/71 (84.51%), Query Frame = 1
Query:    1 EYETPHGRIDLSSCMTVKSAEQKTSKRNALEVSTHE-TTYFMYANTEKEKDDWIGAIGRAIVQASSTYQGD 210
            E++ PHG IDL +C TVKSAE KT ++N+LEVST + +T++MYA TEKEKDDWIGAIGRAIV+ SSTYQ D
Sbjct:   63 EWDRPHGMIDLRTCTTVKSAEMKTGRKNSLEVSTGDGSTFWMYAETEKEKDDWIGAIGRAIVRCSSTYQDD 133          
BLAST of mRNA_Ecto-sp13_S_contig1361.2855.1 vs. uniprot
Match: A0A1V9ZLX5_9STRA (PH domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZLX5_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 3.440e-24
Identity = 47/75 (62.67%), Postives = 61/75 (81.33%), Query Frame = 1
Query:    7 ETPHGRIDLSSCMTVKSAEQKTSKRNALEVSTHETTYFMYANTEKEKDDWIGAIGRAIVQASSTYQGDNNNGDSD 231
            E PHG IDLS C+TVKSAE+KT+KR   EV+T E+TY+M+A +EK+KD+WIGAIGRAIV+ SS++ GD+   D D
Sbjct:   46 EAPHGVIDLSECLTVKSAEEKTNKRFCFEVATPESTYYMHAESEKQKDEWIGAIGRAIVKFSSSFTGDDGYDDQD 120          
BLAST of mRNA_Ecto-sp13_S_contig1361.2855.1 vs. uniprot
Match: A0A7S2R6Y3_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R6Y3_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 4.090e-24
Identity = 46/72 (63.89%), Postives = 59/72 (81.94%), Query Frame = 1
Query:    1 EYETPHGRIDLSSCMTVKSAEQKTSKRNALEVSTHETTYFMYANTEKEKDDWIGAIGRAIVQASSTYQGDNN 216
            E   PHG IDLS+C TVKSA+ K+ KRN+ E+ST ETT+ +YA++EKEKDDWIG+ GRAIV+ SST+QG+ N
Sbjct:   57 ERARPHGMIDLSTCTTVKSADLKSRKRNSFEISTPETTFLLYADSEKEKDDWIGSAGRAIVRCSSTFQGNTN 128          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1361.2855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJR4_ECTSI7.920e-53100.00PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A835ZE28_9STRA8.350e-3679.27PH domain-containing protein n=1 Tax=Tribonema min... [more]
W7TJA6_9STRA6.260e-2867.90Pleckstrin like protein n=2 Tax=Monodopsidaceae Ta... [more]
F0Y7C7_AURAN9.910e-2874.29PH domain-containing protein (Fragment) n=1 Tax=Au... [more]
A0A7S2AKD7_9STRA4.870e-2767.50Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2LSC0_9STRA1.070e-2570.77Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S1E2P5_9STRA8.040e-2564.18Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A7S1G2Q7_9STRA8.180e-2569.01Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A1V9ZLX5_9STRA3.440e-2462.67PH domain-containing protein n=1 Tax=Achlya hypogy... [more]
A0A7S2R6Y3_9STRA4.090e-2463.89Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1361contigEcto-sp13_S_contig1361:2693..3471 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score174.1
Seed ortholog evalue2.8e-41
Seed eggNOG ortholog2880.D8LJR4
Model size258
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005543,GO:0008289,GO:0032266,GO:0035091,GO:0043167,GO:0043168,GO:1901981
Exons2
EggNOG free text desc.phosphatidylinositol-3-phosphate binding
EggNOG OGs29TN5@1,2RXGP@2759
Cds size258
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462726.926504-CDS-Ecto-sp13_S_contig1361:2692..28091681462726.926504-CDS-Ecto-sp13_S_contig1361:2692..2809Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1361 2693..2809 -
1681462726.9389014-CDS-Ecto-sp13_S_contig1361:3330..34711681462726.9389014-CDS-Ecto-sp13_S_contig1361:3330..3471Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1361 3331..3471 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1361.2855.1prot_Ecto-sp13_S_contig1361.2855.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1361 2693..3471 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1361.2855.1

>prot_Ecto-sp13_S_contig1361.2855.1 ID=prot_Ecto-sp13_S_contig1361.2855.1|Name=mRNA_Ecto-sp13_S_contig1361.2855.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=86bp
EYETPHGRIDLSSCMTVKSAEQKTSKRNALEVSTHETTYFMYANTEKEKD
DWIGAIGRAIVQASSTYQGDNNNGDSDSDDEYDYR*
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mRNA from alignment at Ecto-sp13_S_contig1361:2693..3471-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1361.2855.1 ID=mRNA_Ecto-sp13_S_contig1361.2855.1|Name=mRNA_Ecto-sp13_S_contig1361.2855.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=779bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1361:2693..3471- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGTACGAGACGCCGCACGGAAGAATCGACCTAAGCTCGTGCATGACGGT CAAGTCGGCAGAGCAGAAGACCAGCAAGCGAAACGCCCTTGAGGTTTCCA CCCACGAAACAACGTACTTCATGTACGCCAACACCGAAAAGGTAGTATGA TGTAACGGCTGCTGTGCATGTGCATGTGTGTAAGCTAGCTTCGGGGGTGG GAGATCGGATAATCGGGAATGTTTTCTTGTTTCATGTATTTGACTCGTTC GAGTTTTCACCGCCGTCATCTTGAATGGAACGGTGGCCATGAAAGCAATC ACGCCCGTTACCCTTTGCCTGATAATTAGATCAACATGCGGCCTACCGGT ATAGTTCCACCACGGAGCTCAGTTTGTCGGTGATGTTTCGCCCTTACATC AAACTCATGTACCGACAGACCGCCGTGCTGCCCGAAGCAACGTTTGAAGG CTCGTGTGCGTGGACTACAGGGTGTTGGTTCCGATCCCCAAGAGAACCTA CTTCTGACCCCAGTCCAGCACCTGGTCGTGTCCCTAGATAGTATAGCCCG TATTCGTTTCAGAAAAAAATGTTCGGTGAAAGATTTTCATCTTGCCTGCC TTTGAAGTGGATGTAGCATACCACATATTTTACTAACACCCTGGTGTTGC CACTTCGGACAGGAGAAGGACGATTGGATAGGGGCCATCGGCAGGGCAAT AGTTCAGGCCTCGAGCACGTACCAGGGCGACAACAACAACGGCGATTCCG ATTCCGACGACGAGTACGACTACCGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1361:2693..3471-

>mRNA_Ecto-sp13_S_contig1361.2855.1 ID=mRNA_Ecto-sp13_S_contig1361.2855.1|Name=mRNA_Ecto-sp13_S_contig1361.2855.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1361:2693..3471- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGTACGAGACGCCGCACGGAAGAATCGACCTAAGCTCGTGCATGACGGT
CAAGTCGGCAGAGCAGAAGACCAGCAAGCGAAACGCCCTTGAGGTTTCCA
CCCACGAAACAACGTACTTCATGTACGCCAACACCGAAAAGGAGAAGGAC
GATTGGATAGGGGCCATCGGCAGGGCAATAGTTCAGGCCTCGAGCACGTA
CCAGGGCGACAACAACAACGGCGATTCCGATTCCGACGACGAGTACGACT
ACCGTTGA
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