mRNA_Ecto-sp13_S_contig1361.2856.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1361.2856.1
Unique NamemRNA_Ecto-sp13_S_contig1361.2856.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1361.2856.1 vs. uniprot
Match: A0A6H5JY71_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY71_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 3.730e-11
Identity = 46/65 (70.77%), Postives = 49/65 (75.38%), Query Frame = 3 
Query:   24 MATRREGEARQAXXXXXXXEDARN*------QQDSSRSVDKSARVEAEEVNRSPDVSCEVKAGEG 200
            MATRRE EARQA XXXXXX            +QDSSRSVDKSAR  A+EVNRSPDVSC+VKAGEG
Sbjct:    1 MATRREDEARQAAXXXXXXXXXXXXXXXXIEEQDSSRSVDKSARFGADEVNRSPDVSCKVKAGEG 65
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BLAST of mRNA_Ecto-sp13_S_contig1361.2856.1 vs. uniprot
Match: A0A6H5JRK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK5_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.500e-10
Identity = 47/66 (71.21%), Postives = 48/66 (72.73%), Query Frame = 3 
Query:    3 AIEGRVKMATRREGEARQAXXXXXXXEDARN*QQDSSRSVDKSARVEAEEVNRSPDVSCEVKAGEG 200
            AIE RVKMATRRE EARQA XXXXXX DAR  +QDSSRSVDKS            DVSCEVKAGEG
Sbjct:  464 AIESRVKMATRREDEARQAAXXXXXXXDARIEEQDSSRSVDKSXXXXXXXXXXXXDVSCEVKAGEG 529
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BLAST of mRNA_Ecto-sp13_S_contig1361.2856.1 vs. uniprot
Match: A0A6H5KEM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEM8_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 7.980e-9
Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:   85 TPGTNNKIAPAASTRARG*KQKKSTGVRTSAAR 183
            TPG+ NKIAPAASTRARG KQ KSTGVRTSAAR
Sbjct:   21 TPGSKNKIAPAASTRARGLKQTKSTGVRTSAAR 53
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BLAST of mRNA_Ecto-sp13_S_contig1361.2856.1 vs. uniprot
Match: A0A6H5JT75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT75_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 2.990e-7
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 3 
Query:  117 SVDKSARVEAEEVNRSPDVSCEVKAGEG 200
            S  KSARVEAEEVNRSPDVSCEVKAGEG
Sbjct:   33 STRKSARVEAEEVNRSPDVSCEVKAGEG 60
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1361.2856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JY71_9PHAE3.730e-1170.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRK5_9PHAE1.500e-1071.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEM8_9PHAE7.980e-987.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT75_9PHAE2.990e-792.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1361contigEcto-sp13_S_contig1361:12644..12869 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size210
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size141
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462726.8687978-UTR-Ecto-sp13_S_contig1361:12643..127101681462726.8687978-UTR-Ecto-sp13_S_contig1361:12643..12710Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1361 12644..12710 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462726.8795354-CDS-Ecto-sp13_S_contig1361:12710..127861681462726.8795354-CDS-Ecto-sp13_S_contig1361:12710..12786Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1361 12711..12786 -
1681462726.893915-CDS-Ecto-sp13_S_contig1361:12804..128691681462726.893915-CDS-Ecto-sp13_S_contig1361:12804..12869Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1361 12805..12869 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1361.2856.1prot_Ecto-sp13_S_contig1361.2856.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1361 12711..12869 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1361.2856.1

>prot_Ecto-sp13_S_contig1361.2856.1 ID=prot_Ecto-sp13_S_contig1361.2856.1|Name=mRNA_Ecto-sp13_S_contig1361.2856.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=47bp
RRSRAGSRWLPGAKVKPAKQRRPAKQRRTPGTNNKIAPAASTRARG*
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mRNA from alignment at Ecto-sp13_S_contig1361:12644..12869-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1361.2856.1 ID=mRNA_Ecto-sp13_S_contig1361.2856.1|Name=mRNA_Ecto-sp13_S_contig1361.2856.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=226bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1361:12644..12869- (Ectocarpus species13 EcNAP12_S_4_19m)
CGGCGATCGAGGGCAGGGTCAAGATGGCTACCAGGCGCGAAGGTGAAGCC
CGCCAAGCAGCGGAGGCCCGCCGAGCAGCGGAGGCCCGCCAAGCAGCGGA
GGACGCCAGGAACTAACAACAAGATAGCTCCCGCAGCGTCGACAAGAGCG
CGCGGGTAGAAGCAGAAGAAGTCAACAGGAGTCCGGACGTCAGCTGCGAG
GTGAAAGCAGGAGAGGGTTAGATAAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1361:12644..12869-

>mRNA_Ecto-sp13_S_contig1361.2856.1 ID=mRNA_Ecto-sp13_S_contig1361.2856.1|Name=mRNA_Ecto-sp13_S_contig1361.2856.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1361:12644..12869- (Ectocarpus species13 EcNAP12_S_4_19m)
CGGCGATCGAGGGCAGGGTCAAGATGGCTACCAGGCGCGAAGGTGAAGCC
CGCCAAGCAGCGGAGGCCCGCCAAGCAGCGGAGGACGCCAGGAACTAACA
ACAAGATAGCTCCCGCAGCGTCGACAAGAGCGCGCGGGTAG
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